Function Of Oxygen Availability Research Articles

Denitrification in soil as a function of oxygen availability at the microscale

Abstract. The prediction of nitrous oxide (N2O) and of dinitrogen (N2) emissions formed by biotic denitrification in soil is notoriously difficult due to challenges in capturing co-occurring processes at microscopic scales. N2O production and reduction depend on the spatial extent of anoxic conditions in soil, which in turn are a function of oxygen (O2) supply through diffusion and O2 demand by respiration in the presence of an alternative electron acceptor (e.g. nitrate). This study aimed to explore controlling factors of complete denitrification in terms of N2O and (N2O + N2) fluxes in repacked soils by taking micro-environmental conditions directly into account. This was achieved by measuring microscale oxygen saturation and estimating the anaerobic soil volume fraction (ansvf) based on internal air distribution measured with X-ray computed tomography (X-ray CT). O2 supply and demand were explored systemically in a full factorial design with soil organic matter (SOM; 1.2 % and 4.5 %), aggregate size (2–4 and 4–8 mm), and water saturation (70 %, 83 %, and 95 % water-holding capacity, WHC) as factors. CO2 and N2O emissions were monitored with gas chromatography. The 15N gas flux method was used to estimate the N2O reduction to N2. N gas emissions could only be predicted well when explanatory variables for O2 demand and O2 supply were considered jointly. Combining CO2 emission and ansvf as proxies for O2 demand and supply resulted in 83 % explained variability in (N2O + N2) emissions and together with the denitrification product ratio [N2O / (N2O + N2)] (pr) 81 % in N2O emissions. O2 concentration measured by microsensors was a poor predictor due to the variability in O2 over small distances combined with the small measurement volume of the microsensors. The substitution of predictors by independent, readily available proxies for O2 demand (SOM) and O2 supply (diffusivity) reduced the predictive power considerably (60 % and 66 % for N2O and (N2O+N2) fluxes, respectively). The new approach of using X-ray CT imaging analysis to directly quantify soil structure in terms of ansvf in combination with N2O and (N2O + N2) flux measurements opens up new perspectives to estimate complete denitrification in soil. This will also contribute to improving N2O flux models and can help to develop mitigation strategies for N2O fluxes and improve N use efficiency.

Development of an apatite oxygen paleobarometer: Experimental characterization of Sm3+-substituted apatite fluorescence as a function of oxygen availability

Global, apatite-bearing phosphorites represent unique biogeochemical periods coincident with major transitions in biological evolution and, particularly, marine oxygenation. However, current understanding of such oxygenation is limited by qualitative and not uncommonly contrasting interpretations of the marine redox conditions evidenced by sedimentary isotope and trace element abundances. A potentially novel measure of ancient marine oxygenation has previously been indicated by fluorescence signatures detected in Sm3+-substituted microfossil-preserving apatite from Early Cambrian phosphorites, consistent with experimental studies demonstrating an oxygen-dependent mechanism for Sm3+ incorporation. Quantitative calibration of these signatures would enable the interpretation of oxygen concentrations during sedimentary apatite formation. In the experiments described, heat-promoted substitution of Sm3+ in apatite powder pellets has been conducted under gaseous oxygen concentrations ranging from 0 to 20.9%. The resulting fluorescence signals provide a comparison to those observed in naturally occurring phosphorites that should reflect the levels of oxygen in the immediate precipitating environment. These analyses suggest that a metric describing the relative spectral characteristics derived from end-member oxic and anoxic experiments, here described as an apatite oxygen paleobarometer (AOP), robustly correlates with gaseous oxygen concentrations. The application of this quantifiable metric to phosphorite apatite is expected to provide a fundamentally new dataset by which to probe ancient marine redox conditions, particularly during the Neoproterozoic-Cambrian phosphogenic event and diversification of early metazoans.

Carbon flux distribution in the metabolism of Shimwellia blattae (p424IbPSO) for isobutanol production from glucose as function of oxygen availability

AbstractBACKGROUNDThe carbon flux distribution in Shimwellia blattae (p424IbPSO) cultures when glucose is employed as carbon source is studied in a stirred tank bioreactor changing the oxygen availability. The strain has been constructed to produce isobutanol combining the branched‐chain amino acids pathway and Ehrlich pathway. The information of many similar genetic modified strains for this bioprocess in the literature presents significant discrepancies on the oxygen influence.RESULTSThe study carried out in this work pointed out the presence of other metabolites formed under aerobic conditions, such as isobutyric acid, 2,3‐butanedione, acetoin, 2,3‐butanediol and 3‐oxo‐1‐buten‐2‐yl ether, not previously reported in the literature on the production of isobutanol with S. blattae (p424IbPSO) strain.CONCLUSIONIn this work the routes or the chemical reactions involved in the bioprocess as a function of the availability of oxygen are elucidated. Anaerobic conditions are the best for isobutanol production from glucose employing this strain; around 12 g L−1 of isobutanol are obtained under these conditions. Aerobic conditions are not adequate to produce isobutanol, although the need for oxygen, at least for growth, is also demonstrated. © 2018 Society of Chemical Industry

Impact of oxygenation on the performance of three non-Saccharomyces yeasts in co-fermentation with Saccharomyces cerevisiae.

The sequential or co-inoculation of grape must with non-Saccharomyces yeast species and Saccharomyces cerevisiae wine yeast strains has recently become a common practice in winemaking. The procedure intends to enhance unique aroma and flavor profiles of wine. The extent of the impact of non-Saccharomyces strains depends on their ability to produce biomass and to remain metabolically active for a sufficiently long period. However, mixed-culture wine fermentations tend to become rapidly dominated by S. cerevisiae, reducing or eliminating the non-Saccharomyces yeast contribution. For an efficient application of these yeasts, it is therefore essential to understand the environmental factors that modulate the population dynamics of such ecosystems. Several environmental parameters have been shown to influence population dynamics, but their specific effect remains largely uncharacterized. In this study, the population dynamics in co-fermentations of S. cerevisiae and three non-Saccharomyces yeast species: Torulaspora delbrueckii, Lachancea thermotolerans, and Metschnikowia pulcherrima, was investigated as a function of oxygen availability. In all cases, oxygen availability strongly influenced population dynamics, but clear species-dependent differences were observed. Our data show that L. thermotolerans required the least oxygen, followed by T. delbrueckii and M. pulcherrima. Distinct species-specific chemical volatile profiles correlated in all cases with increased persistence of non-Saccharomyces yeasts, in particular increases in some higher alcohols and medium chain fatty acids. The results highlight the role of oxygen in regulating the succession of yeasts during wine fermentations and suggests that more stringent aeration strategies would be necessary to support the persistence of non-Saccharomyces yeasts in real must fermentations.

Disentangling the effects of tocilizumab on neutrophil survival and function.

The synovial tissue in rheumatoid arthritis (RA) represents a hypoxic environment with up-regulated pro-inflammatory cytokines and cellular infiltrates including neutrophils. Although inhibition of the interleukin (IL)6 receptor pathway by tocilizumab is a potent treatment option for RA, it may also cause adverse effects such as an occasionally high-grade neutropenia. We analysed the impact of tocilizumab on survival, mediator secretion, oxidative burst, phagocytosis and energy availability of high-dose toll-like receptor (TLR)2/4-stimulated neutrophils (to mimic an arthritis flare) under normoxic versus hypoxic conditions. Human neutrophils were purified, pre-treated with varying doses of tocilizumab, dexamethasone or human IgG1 and high-dose-stimulated with lipopolysaccharide (LPS) alone-triggering TLR2/4-, LPS plus IL6, or left unstimulated. Cells were then incubated under normoxic (18% O2) or hypoxic (1% O2) conditions and subsequently analysed. Neutrophil survival and energy availability were significantly decreased by tocilizumab in a dose-dependent manner in high-dose TLR2/4-stimulated cells, but to a greater extent under normoxia as compared to hypoxia. We also found high-dose LPS-stimulated oxidative burst and phagocytosis of neutrophils to be higher under hypoxic versus normoxic conditions, but this difference was reduced by tocilizumab. Finally, we observed that tocilizumab affected neutrophil mediator secretion as a function of oxygen availability. Tocilizumab is known for both beneficial effects and a higher incidence of neutropenia when treating RA patients. Our results suggest that both effects can at least in part be explained by a reduction in neutrophil survival, a dose-dependent inhibition of hypoxia-induced NADPH oxidase-mediated oxidative burst and phagocytosis of infiltrating hypoxic neutrophils and an alteration of mediator secretion.

Mutual Regulation of Hypoxia-Inducible Factor and Mammalian Target of Rapamycin as a Function of Oxygen Availability

The mammalian target of rapamycin (mTOR) regulates cellular growth and proliferation, mainly by controlling cellular translation. Most tumors show constitutive activation of the mTOR pathway. In hypoxia, mTOR is inactivated, which is believed to be part of the program of the cell to maintain energy homeostasis. However, certain proteins are believed to be preferentially translated during hypoxia via 5' terminal oligopyrimidine tract mechanisms with controversial discussion about the involvement of the mTOR-dependent ribosomal protein S6 (rpS6). The hypoxia-inducible transcription factor (HIF) is the master regulator of hypoxic adaptation and itself strongly implicated in tumor growth. HIF is translationally regulated by mTOR. The regulatory features and the involvement of molecular oxygen itself in this regulation of HIF by mTOR are poorly understood. mTOR inhibition leads to profound attenuation of HIFalpha protein in the majority of primary and cancer cells studied. Under severe hypoxia, no influence of mTOR inhibitors was observed; thus, stimulation of HIFalpha by mTOR may only be relevant under mild hypoxia or even normoxia. HIF expression and phosphorylated rpS6 negatively correlate in experimental tumors. In cell culture, prolonged hypoxia abolishes rpS6 phosphorylation, which seems to be partly independent of the upstream p70S6 kinase. We show that hypoxic repression of rpS6 is largely dependent on HIF, implicating a negative feedback loop, which may influence cellular translational rates and metabolic homeostasis. These data implicate that the hypoxic microenvironment renders tumor cells resistant to mTOR inhibition, at least concerning hypoxic gene activation, which would add to the difficulties of other established therapeutic strategies in hypoxic cancer tissues.

The candidate tumor suppressor ING4 represses activation of the hypoxia inducible factor (HIF)

The hypoxia inducible factor (HIF) plays an important role in the progression of a number of pathophysiological processes including tumorigenesis. In addition to several well characterized oxygen-dependent modes of regulation, the function of the HIF transcription factor can also be influenced through the action of other regulatory pathways. Misregulation of these factors resulting in inappropriate HIF expression or activity can contribute to the progression of human cancers through the induction of genes promoting angiogenesis, glycolysis, cell survival, and metastasis, among other processes. The candidate tumor suppressor protein inhibitor of growth family member 4 (ING4) has recently been implicated as a repressor of angiogenesis and tumor growth through association with NF-kappaB. Here we demonstrate that suppression of ING4 further induces HIF transcriptional activity as well. ING4 directly associates with the HIF prolyl hydroxylase, an Fe(II)-dependent oxygenase previously shown to mediate HIF stability as a function of oxygen availability. However, rather than affecting HIF's stability, ING4 mediates HIF's activity. These data support a model in which, in addition to regulating HIF stability, HIF prolyl hydroxylases can modulate HIF function through the recruitment of ING4, a likely component of a chromatin-remodeling complex.

Heat flux, oxygen flux, and mitochondrial redox state as a function of oxygen availability and ciliary activity in excised gills of Mytilus edulis.

The ciliated gill of bivalve molluscs is situated at an interface between animal and environment. Cilia propel water past the gills to deliver oxygen and nutrition to the animal. Ciliary activity is driven by dynein ATPases and requires a continual supply of ATP at a rate sufficient to match the rate of ATP hydrolysis. Control of the balance between ATP supply and demand in the ciliated gill, and how this balance may be altered by environmental stresses, is unknown. In this pilot study, metabolic flux of excised gills from the marine mussel Mytilus edulis was examined in response to oxygen availability and to serotonin-stimulated ciliary activity. Heat flux and oxygen flux were measured simultaneously with calorespirometry. In parallel experiments, the redox state of mitochondrial cytochromes was determined with in vivo spectrophotometry. Above 4 kPa pO2, heat flux was supported by aerobic metabolism. Anoxic heat flux was less than 5% of aerobic heat flux. Heat and oxygen fluxes nearly doubled in gills in the presence of 10 microM serotonin; however, half-maximal pO2 for heat and oxygen fluxes and for reduction of mitochondrial cytochromes remained unchanged from control levels. In gills having inactive cilia in half-strength seawater, half-maximal pO2 for heat and oxygen fluxes and for cytochrome reduction nearly doubled compared with valves in full-strength seawater. These data indicate that limitation to oxygen delivery imposed by boundary layers may be reduced when ciliary beat frequency is elevated, leading to enhanced oxygen flux to intracellular mitochondrial which matches the increased energy demand by the cilia.

Ignition Propensity Testing at Different O2 Concentrations

Ignition propensity of cigarettes on soft furnishings is a function of oxygen availability. Oxygen availability, in turn, depends on air movement, and substrate permeability and geometry. Experiments are described where oxygen concentrations over a range from 14 to 36% were used to control oxygen availability and thereby simulate the effects of the other above named parame ters. The experiments were carried out with two cigarettes (high and low tobacco density and paper permeability), two fabrics (Denim and California Standard, both treated with a range of levels of potassium acetate to obtain an array of different ignitabilities), and two configurations (Flat and L). Each cigarette was characterized in terms of an Ignition Oxygen Level (IOL) (minimum O2 concentration required for ignition) and an Extinction Oxygen Level (EOL) (maximum O 2 concentration below which the cigarettes self- extinguish). The IOL is a function of fabric ignitability, and the EOL is a func tion of fabric permeability. When the results are plotted on a grid of Fabric Ig nitability (FI) versus Oxygen Availability (OA) three domains result: (1) combinations of FI and OA where ignitions take place, (2) combinations of FI and OA where the cigarette self-extinguishes, and (3) combinations of FI and OA where the cigarette burns its whole length without causing an ignition. The experiments demonstrated that when cigarettes are ranked according to ignition propensity, the rankings can reverse depending on test conditions. Thus, of the two test cigarettes, the high density/paper permeability cigarette was more ignition-prone under conditions of limited oxygen availability, whereas the low density/paper permeability cigarette became more ignition- prone as oxygen availability increased.

Effect of oxygen on steady-state product distribution inBacillus polymyxa fermentations

Bacillus polymyxa ferments glucose to 1-2,3 butanediol, acetoin, ethanol, acetic acid, lactic acid, and formic acid. This research investigates product formation as a function of oxygen availability. A predictive model that simulates product distribution at known oxygen transfer rates is developed on the hypothesis that, in an energy-limited environment, B. polymyxa utilizes glucose and oxygen in the most efficient manner. The efficiency of utilization of glucose and oxygen is measured in terms of the ATP yields of each oxidative pathway. The identity of the products constituting the profile at the given oxygen transfer rate is determined by comparing the ATP production and consumption rates. While the ATP generated is calculated from a knowledge of the oxygen transfer rate and ATP yields of the oxidative pathways, the ATP consumption is estimated by the Pirt expression in terms of growth- and nongrowth-associated components. The product formation rates are obtained by solving ATP and NAD balance equations. They equate the production and consumption rates of these intermediates and are derived from the pseudo-steady-state hypothesis. The model is applied to continuous culture systems that are both open and closed with respect to biomass. At a given oxygen transfer rate, dilution rate, and inlet glucose concentration, the model predicts steady-state concentrations of two dominant fermentation end products with the help of four parameters that can be determined from independent experiments. In contrast with earlier approaches, the experimental studies are carried out in continuous culture. Product profiles are obtained at various oxygen transfer rates, fer rates, inlet glucose concentrations, and dilution rates. The effect of pH on the relative distribution of products is also demonstrated. Results indicate that the model is fairly successful in predicting product profiles as a function of oxygen availability.

Effects of molecular oxygen on chick limb bud chondrogenesis

Abstract Chondrogenesis is an important process in the development of the embryonic chick limb. If limb buds are dispersed just prior to the initiation of chondrogenic differentiation and their cells seeded densely in culture as three-dimensional “micromasses,” some of the cells differentiate to form chondrogenic nodules. These nodules characteristically produce sulfated proteoglycans and type II collagen. Two conditions within the early avian limb core have been linked causatively to the initiation of chondrogenesis: a limitation in the availability of molecular oxygen and a low NAD content of the tissue. The O 2 limitation is thought to be responsible for the low NAD level. We examined the effects of molecular oxygen on the NAD content of chick limb-bud cells in micromass culture, the formation of chondrocytic nodules, and the production of type II collagen and sulfated proteoglycans. The NAD content of the cells in the micromasses and the production of type II collagen did not vary greatly as a function of oxygen availability. The development of the nodules was modified, but not eliminated, by high oxygen partial pressure (0.95). It was eliminated by anoxia. Proteoglycan synthesis was decreased significantly by high oxygen tension and its sulfation was also decreased, more so in the wing-bud than the leg-bud cells. The results suggest that in culture, high oxygen tension is compatible with some, but not all, aspects of chondrogenic differentiation of cells from embryonic chick limbs.