Blazar flares provide a window onto the extreme physical processes occurring in relativistic outflows. Most numerical codes used for modelling blazar emission during flares use a simplified continuous-loss description of particle cooling due to the inverse Compton (IC) process, neglecting non-continuous (discrete) effects that arise in the Klein-Nishina (KN) regime. The significance of such effects has not yet been explored in detail. In this study, we investigate the importance of non-continuous Compton cooling losses and their impact on the electron spectrum and spectral energy distribution (SED) of blazars during high flux states (flares), as well as in the low state. We solve the full transport equation numerically, accounting for large relative jumps in energy by extending our existing blazar flare modelling code EMBLEM. We perform a detailed physical modelling of the brightest gamma -ray flare of the archetypal flat-spectrum radio quasar (FSRQ) 3C\,279 detected in June 2015. We then compare results obtained using the full cooling term and using the continuous-loss approximation. We show that during flaring states of FSRQs characterised by high Compton dominance, the non-continuous cooling can lead to significant modification of the electron spectrum, introducing a range of distinct features, such as low-energy tails, hardening and/or softening, narrow and extended particle excesses, and shifts in the cooling break position . Such distortion translates to differences in the associated SED of up to sim 50<!PCT!>. This highlights the importance of non-continuous effects and the need to consider them in blazar emission models, particularly applied to extreme gamma -ray flares.
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