Abstract This study conducts Life Cycle Assessment (LCA) to evaluate the environmental impacts of Shipboard Carbon Capture & Storage (SCCS) across its entire lifecycle. It examines the full-spectrum carbon capture and storage effects from well-to-tank and tank-to-propeller for four types of marine fuels: Very Low Sulphur Fuel Oil (VLSFO), Marine Gas Oil (MGO), Liquefied Natural Gas (LNG), and Methanol. Additionally, the study examines the Energy Efficiency Existing Ship Index (EEXI) and Carbon Intensity Indicator (CII) of a current ocean-going container ship to quantify the potential benefits of SCCS in reducing ship carbon emissions. The results indicate that the application of SCCS can significantly reduce emissions from carbon-based fuels during ship operations. In particular, ships using VLSFO as fuel can achieve 61.0% reduction in emissions by installing SCCS. However, the application of SCCS leads to 7.8% increase in fuel consumption due to additional energy requirement. In addition, this study also found while fossil methanol reduces emissions during ship combustion, its life cycle emissions are 17.5%-19.6% higher than conventional fossil fuel due to production emissions. The overall SCCS has a positive impact on emission reduction for ships and is reflected in the improvements in EEXI and CII. With the implementation of SCCS, ships fuelled by VLSFO and MGO can remain compliant with IMO Greenhouse Gases emission strategy until 2030. For ships fuelled by LNG and Methanol, compliance can remain beyond 2030.