Frog Occupancy Research Articles

Cryptic declines of small, cold-water specialists highlight potential vulnerabilities of headwater streams as climate refugia

Increasing temperatures and climate-driven disturbances like wildfire are a growing threat to many species, including cold-water specialists. Montane areas and cold streams are often considered climate refugia that buffer communities against change. However, climate refugia are often species-specific, and despite growing awareness that life histories and habitat requirements shape responses to change, small or non-game species are often under-represented in monitoring and planning programs. A recent study in Montana, USA, revealed much larger warming-related declines in occupancy for small, non-game slimy sculpin (Cottus cognatus) between 1993 and 1995 and 2011–2013 than for two socially valued salmonid fishes that shape regional conservation efforts. To broaden insight into climate change vulnerabilities of headwater stream communities, we analyzed data for Rocky Mountain tailed frogs (Ascaphus montanus) that were collected during those same electrofishing surveys for fishes from 241 stream reaches. Tailed frogs occupy small, cold streams and have several life-history traits that make them sensitive to environmental change. We used a Bayesian framework to estimate occupancy, colonization, and extinction dynamics relative to forest canopy, estimated stream temperature, and wildfire effects. Tailed frog occupancy decreased by 19 % from 1993 to 1995 to 2011–2013. Changes in occupancy were linked with increased extinction and reduced colonization where there were fire-driven reductions in canopy cover, and reduced colonization of stream reaches that warmed on average 0.8 °C during the study. Our results highlight extensive extirpations for oft-overlooked species and emphasize the importance of including species with diverse habitat requirements and life histories in conservation planning.

Amphibian population responses to mitigation: Relative importance of wetland age and design

Wetland creation is a common practice to mitigate for the loss of natural wetlands. However, there is still uncertainty about how effectively created wetlands replace habitat provided by natural wetlands. This uncertainty is due in part because post-construction monitoring of biological communities, and vertebrates especially, is rare and typically short-term (<5 years). We estimated occupancy of 4 amphibian species in 8 created mitigation wetlands, 7 impacted wetlands, and 7 reference wetlands in the Greater Yellowstone Ecosystem in Wyoming, USA. Mitigation wetlands were created to replace wetland habitat that was lost during road construction and ranged in age from 1 to 10 years when sampled. Impacted wetlands were natural wetlands partially filled by road construction and were adjacent to a highway. We sampled for amphibian larvae during 6 summers from 2013 to 2020 and used multi-species occupancy models that estimated detection and occupancy of each of 4 amphibian species to determine how amphibian responses changed over time, especially in mitigation wetlands. Occupancy did not differ between impacted and reference wetlands for any of the 4 amphibian species. Western Toads (Anaxyrus boreas) were most common (although briefly) in created wetlands, and occupancy of Columbia Spotted Frogs (Rana luteiventris), Western Tiger Salamanders (Ambystoma mavortium), and Boreal Chorus Frogs (Pseudacris maculata) was lower in created wetlands than in impacted or reference wetlands. Individual wetland area was positively associated with occupancy for all 4 species and wetland vegetation cover was positively associated with Boreal Chorus Frog and Columbia Spotted Frog occupancy; these results emphasize the importance of design characteristics when planning mitigation wetlands. The link between wetland age and occupancy was complex and included threshold and quadratic relationships for three of the four species, but only Boreal Chorus Frog occupancy was still increasing slowly at the end of our study. Our results indicate created wetlands did not attain the suitability of impacted and natural wetlands for local amphibians, even several years after construction. The complex relationships between wetland age and species-specific occupancy illustrate the importance of long-term monitoring in describing population responses to the construction of wetlands as mitigation for wetland loss.

Habitat-dependent effects of predatory spiders on prey frogs in a Neotropical wet forest

AbstractIn seasonal wet Neotropical forests, many studies have suggested that species-rich terrestrial frog assemblages are regulated bottom-up by the abundance of leaf litter. However, terrestrial frogs are prey to a diverse community of predators, and no studies have tested for top-down effects of predators on this or other anuran assemblages. Here, we used an extensive field dataset to model the relative contribution of food resources, microhabitat resources and predators towards the occupancy and detection of two frog species (Craugastor bransfordiiandOophaga pumilio) at La Selva, Costa Rica. Frog occupancy was most strongly influenced by predatory spiders and secondarily influenced by the abundance of leaf litter. Predators exerted stronger effects on frogs than food resources, and frogs avoided predators more as leaf litter decreased. Detection probability was elevated when predators were present. We found support for bottom-up effects of leaf litter on the terrestrial frog assemblage, but top-down effects by predators exerted stronger effects on frog occupancy and detection. Because predator avoidance varied along a resource gradient, predator and resource effects appear to be dependent, supporting interactions between top-down and bottom-up mechanisms. Climate-driven decreases in leaf litter may drive decreased availability of frog refugia and increased interactions between frogs and predators.

Assessing the role of habitat and species interactions in the population decline and detection bias of Neotropical leaf litter frogs in and around La Selva Biological Station, Costa Rica

Worldwide, amphibian populations have been declining rapidly. This decline can be attributed to many factors including climate change, pesticide exposure, and emerging infectious diseases, among other important factors, but few studies have examined the influence of species interactions. In this study, we examined how habitat factors and co-occurring avian and mammalian species, as well as humans, exert direct and indirect effects on Neotropical amphibian population dynamics. We further examined how these habitat and species interactions could affect our ability to reliably detect amphibian presence to robustly estimate population trends. We conducted amphibian visual encounter surveys at 26 randomly selected sites in the La Selva Biological Station, in northeastern Costa Rica, as well as 26 sites across five additional forest fragments in the region. Furthermore, we used camera traps to collect data on avian and mammalian communities and human visitation at those amphibian survey plots. From these data, we were able to estimate species occupancy probabilities for leaf litter frogs across sites and their relationships to habitat and interspecific species interaction covariates. We also conducted an experiment with plastic model frogs to estimate detection probabilities when a population is known to occur at a site with certainty. Our results suggested that strawberry poison dart frog (Oophagapumilio) occupancy was positively related to secondary forest and their detection was negatively related to increasing air temperatures at the times of the surveys. Leaf litter frog occupancy was negatively related to core La Selva sites and human detections at sites, yet their detection was positively related to human trail presence, which might be related to reduced leaf litter cover due to heavy trampling. Our experimental surveys suggested that Neotropical leaf litter frog communities are difficult to detect when present and future studies should explicitly account for this detection bias to effectively monitor population trends.

Repurposing Environmental DNA Samples to Verify the Distribution of Rocky Mountain Tailed Frogs in the Warm Springs Creek Basin, Montana

Rocky Mountain tailed frogs (Ascaphus montanus) were thought to exist exclusively in two tributaries of Warm Springs Creek watershed—Storm Lake Creek and Twin Lakes Creek, based on opportunistic observations of tailed frogs during fish sampling rather than formal basin-wide sampling for frogs. We used extant environmental DNA (eDNA) samples originally collected to delineate bull trout (Savelinus confluentus) occupancy to determine whether tailed frogs reside outside of their current known distribution in the Warm Springs Creek watershed. We were able to rapidly confirm tailed frog occupancy in these two tributaries of Warm Springs Creek watershed, and located tailed frogs throughout the mainstem of Warm Springs Creek where their presence was previously unknown. Repurposing eDNA samples provides a sensitive and extremely cost effective way to determine species distributions, because existing samples can continue to be retested for unrelated taxa without repeating field collections.

Frog occupancy of polluted wetlands in urban landscapes.

Urban sprawl and the rising popularity of water-sensitive urban design of urban landscapes has led to a global surge in the number of wetlands constructed to collect and treat stormwater runoff in cities. However, contaminants, such as heavy metals and pesticides, in stormwater adversely affect the survival, growth, and reproduction of animals inhabiting these wetlands. A key question is whether wildlife can identify and avoid highly polluted wetlands. We investigated whether pond-breeding frogs are attempting to breed in wetlands that affect the fitness of their offspring across 67 urban wetlands in Melbourne, Australia. Frog species richness and the concentration of contaminants (heavy metals and pesticides) were not significantly related, even in the most polluted wetlands. The proportion of fringing vegetation at a wetland had the greatest positive influence on the number of frog species present and the probability of occurrence of individual species, indicating that frogs inhabited wetlands with abundant vegetation, regardless of their pollution status. These wetlands contained contaminant levels similar to urban wetlands around the world at levels that reduce larval amphibian survival. These results are, thus, likely generalizable to other areas, suggesting that urban managers could inadvertently be creating ecological traps in countless cities. Wetlands are important tools for the management of urban stormwater runoff, but their construction should not facilitate declines in wetland-dependent urban wildlife.

Frog assemblage associated with bromeliads in a sandy coastal plain in the state of Espírito Santo, southeastern Brazil

Amphibians may use bromeliads for reproduction (i.e., bromeligenous species) or only for refuge and foraging (i.e., bromelicolous species). The partition of bromeliad resources is essential to maintain the coexistence of the associated assemblages. We sampled 913 bromeliads in a sandy coastal plain (i.e., restinga habitat) in southeastern Brazil and found 234 frogs belonging to seven species. One of the frog species was bromeligenous and the other six were facultative bromelicolous. The bromeliads of the genus Aechmea were the most frequently used by frogs. The low degree of frog occupancy of bromeliads (26%) suggests habitat segregation. Our study highlights the importance of maintenance of bromeliad species for conservation of the associated frog assemblages.

Predictors of breeding site occupancy by amphibians in montane landscapes

ABSTRACTEcological relationships and processes vary across species’ geographic distributions, life stages and spatial, and temporal scales. Montane landscapes are characterized by low wetland densities, rugged topographies, and cold climates. Consequently, aquatic‐dependent and low‐vagility ectothermic species (e.g., pool‐breeding amphibians) may exhibit unique ecological associations in montane landscapes. We evaluated the relative importance of breeding‐ and landscape‐scale features associated with spotted salamander (Ambystoma maculatum) and wood frog (Lithobates sylvaticus) wetland occupancy in Maine's Upper Montane‐Alpine Zone ecoregion, and we determined whether models performed better when the inclusive landscape‐scale covariates were estimated with topography‐weighted or circular buffers. We surveyed 135 potential breeding sites during May 2013–June 2014 and evaluated environmental relationships with multi‐season implicit dynamics occupancy models. Breeding site occupancy by both species was influenced solely by breeding‐scale habitat features. Spotted salamander occupancy probabilities increased with previous or current beaver (Castor canadensis) presence, and models generally were better supported when the inclusive landscape‐scale covariates were estimated with topography‐weighted rather than circular buffers. Wood frog occupancy probabilities increased with site area and percent shallows, but neither buffer type was better supported than the other. Model rank order and support varied between buffer types, but model inferences did not. Our results suggest pool‐breeding amphibian conservation in montane Maine include measures to maintain beaver populations and large wetlands with proportionally large areas of shallows ≤1‐m deep. Inconsistencies between our study and previous studies substantiate the value of region‐specific research for augmenting species’ conservation management plans and suggest the application of out‐of‐region inferences may promote ineffective conservation. © 2016 The Wildlife Society.

AMPHIBIAN RESPONSE TO A LARGE-SCALE HABITAT RESTORATION IN THE PRAIRIE POTHOLE REGION

Over the next half-century, scientists anticipate that nearly one third of the currently recognized 7,450 amphibian species will become extinct. Many organizations have responded to the challenge of conserving amphibian biodiversity, some indirectly. Under the auspices of the Iowa Great Lakes Management Plan, the United States Fish and Wildlife Service, Department of Natural Resources, and their partners have been implementing habitat restoration efforts designed to protect water quality, provide recreational opportunities, and benefit wildlife at the regional level. With this program, over 130 wetlands have been created in the past 30 years on recently purchased public lands—one of the largest wetland restoration projects conducted in the Prairie Pothole Region of the Great Plains. While amphibians were not the main target of these restorations, we show that in response, 121 new breeding populations of native Northern Leopard Frogs (Lithobates pipiens; n = 80) and Eastern Tiger Salamanders (Ambystoma tigrinum; n = 41) have been established; in addition, we found 19 populations of non-native American Bullfrogs (L. catesbeianus). Using the program PRESENCE, we show that leopard frog occupancy was greatest in newer (&lt;18 years old), intermediate-sized wetlands, and that tiger salamander occupancy was greatest in small wetlands without fish and larval bullfrogs. These data imply that because native amphibians responded positively to these newly established wetlands, habitat availability has likely been a factor in limiting population numbers. Further, these data suggest the presence of fishes and introduced bullfrogs interferes with the ability of tiger salamanders to colonize restored wetlands.

Discovery of the Oregon Spotted Frog in the Northern Puget Sound Basin, Washington State

The Oregon Spotted Frog (Rana pretiosa), a federally threatened species also listed as endangered in Washington State, has a historical distribution that extends from southwestern British Columbia to northeastern California, yet their current range appears highly fragmented. This pattern may reflect this species' distinctive aquatic habitat requirements or simply be a function of the limited historical survey effort in selected areas. Hence, in an attempt to determine whether any additional populations of Oregon Spotted Frogs existed in the northern Puget Sound basin of Washington State, we conducted surveys at a large number of sites (n = 131) across this region in 2011–2013. To increase the likelihood of detecting this species, we created a Geographic Information System screening tool to identify areas of appropriate habitat (low stature emergent marsh ≥4 ha) based on National Wetlands Inventory maps. We also concentrated survey efforts on the headwater portions of lowland streams because non-headwater areas within the study area are highly altered and more likely to harbor exotic aquatic predators (American Bullfrogs [Lithobates catesbeianus] and warmwater fish species), which reduce the likelihood of Oregon Spotted Frog occupancy. We visually documented breeding activity of Oregon Spotted Frogs at 13 previously unrecognized sites in the Samish (n = 8), Nooksack (n = 4), and Sumas (n = 1) watersheds. We located a total of 1359 Oregon Spotted Frog egg masses at the 13 occupied sites over the three survey seasons. We genetically verified the species identification at 4 of these sites. In the course of these surveys, we also documented breeding chronology and provided information on habitat. Vegetation changes due to cessation of grazing and recent woody plantings may have decreased habitat suitability in at least 5 of the 13 occupied sites. Despite time and land-ownership constraints, our discovery of new breeding sites suggests that additional surveys for Oregon Spotted Frogs are needed to fully understand the species' distribution. Although Oregon Spotted Frogs are still rare, their current distribution is more widespread than previously recognized.

Persistence at distributional edges: Columbia spotted frog habitat in the arid Great Basin, USA.

A common challenge in the conservation of broadly distributed, yet imperiled species is understanding which factors facilitate persistence at distributional edges, locations where populations are often vulnerable to extirpation due to changes in climate, land use, or distributions of other species. For Columbia spotted frogs (Rana luteiventris) in the Great Basin (USA), a genetically distinct population segment of conservation concern, we approached this problem by examining (1) landscape-scale habitat availability and distribution, (2) water body-scale habitat associations, and (3) resource management-identified threats to persistence. We found that areas with perennial aquatic habitat and suitable climate are extremely limited in the southern portion of the species’ range. Within these suitable areas, native and non-native predators (trout and American bullfrogs [Lithobates catesbeianus]) are widespread and may further limit habitat availability in upper- and lower-elevation areas, respectively. At the water body scale, spotted frog occupancy was associated with deeper sites containing abundant emergent vegetation and nontrout fish species. Streams with American beaver (Castor canadensis) frequently had these structural characteristics and were significantly more likely to be occupied than ponds, lakes, streams without beaver, or streams with inactive beaver ponds, highlighting the importance of active manipulation of stream environments by beaver. Native and non-native trout reduced the likelihood of spotted frog occupancy, especially where emergent vegetation cover was sparse. Intensive livestock grazing, low aquatic connectivity, and ephemeral hydroperiods were also negatively associated with spotted frog occupancy. We conclude that persistence of this species at the arid end of its range has been largely facilitated by habitat stability (i.e., permanent hydroperiod), connectivity, predator-free refugia, and a commensalistic interaction with an ecosystem engineer. Beaver-induced changes to habitat quality, stability, and connectivity may increase spotted frog population resistance and resilience to seasonal drought, grazing, non-native predators, and climate change, factors which threaten local or regional persistence.

Seasonal differences in extinction and colonization drive occupancy dynamics of an imperilled amphibian.

A detailed understanding of the population dynamics of many amphibian species is lacking despite concerns about declining amphibian biodiversity and abundance. This paper explores temporal patterns of occupancy and underlying extinction and colonization dynamics in a regionally imperiled amphibian species, the Northern leopard frog (Lithobates pipiens) in Alberta. Our study contributes to elucidating regional occupancy dynamics at northern latitudes, where climate extremes likely have a profound effect on seasonal occupancy. The primary advantage of our study is its wide geographic scale (60,000 km2) and the use of repeat visual surveys each spring and summer from 2009–2013. We find that occupancy varied more dramatically between seasons than years, with low spring and higher summer occupancy. Between spring and summer, colonization was high and extinction low; inversely, colonization was low and extinction high over the winter. The dynamics of extinction and colonization are complex, making conservation management challenging. Our results reveal that Northern leopard frog occupancy was constant over the last five years and thus there is no evidence of decline or recovery within our study area. Changes to equilibrium occupancy are most sensitive to increasing colonization in the spring or declining extinction in the summer. Therefore, conservation and management efforts should target actions that are likely to increase spring colonization; this could be achieved through translocations or improving the quality or access to breeding habitat. Because summer occupancy is already high, it may be difficult to improve further. Nevertheless, summer extinction could be reduced by predator control, increasing water quality or hydroperiod of wetlands, or increasing the quality or quantity of summer habitat.

Influence of Water Conductivity on Amphibian Occupancy in the Greater Yellowstone Ecosystem

Investigation of amphibian occupancy at potential breeding sites can provide information about the distribution and relative abundance of species, as well as insights into habitat relationships across large areas such as national parks. Based on previous research in the Greater Yellowstone Ecosystem (GYE), we hypothesized that the probability of amphibian occupancy increases with water conductivity. We conducted amphibian surveys with habitat measurements at 235 wetland sites in the GYE in 2002, thereby locating breeding populations of boreal toads (Anaxyrus boreas), boreal chorus frogs (Pseudacris maculata), Columbia spotted frogs (Lithobates luteiventris), and barred tiger salamanders (Ambystoma mavortium). Repeat surveys provided detection probabilities, which allowed for unbiased estimates of occupancy. The boreal chorus frog was the most common amphibian in the GYE, with breeding populations occupying approximately 48% of the sites, followed by Columbia spotted frog (35%), barred tiger salamander (14%), and boreal toad (13%). Occupancy corrected for detection probability averaged 36% higher (range 27%–50%) than naive estimates of occupancy. Detection rates ranged from 0.65 to 0.78 for the 4 species. Modeling of habitat covariates indicated that higher conductivity was positively associated with toad occupancy but negatively associated with chorus frog occupancy; Columbia spotted frog and barred tiger salamander occupancy was little influenced by water conductivity. Fish presence had a negative effect on occupancy of barred tiger salamanders and boreal chorus frogs. These results may help managers in the GYE manage and conserve important breeding habitat for amphibians, particularly if longterm monitoring efforts indicate declines in amphibian populations.

Factors influencing stream occupancy and detection probability parameters of stream-associated amphibians in commercial forests of Oregon and Washington, USA

Potential immediate and prolonged impact of timber harvests on stream-associated amphibians (SAA; torrent ( Rhyacotriton spp.) and giant salamanders ( Dicamptodon spp.) and coastal tailed frogs ( Ascaphus truei)) in Oregon and Washington, USA is a management concern, in part because of widespread commercial management of forests across their geographic distributions. Relationships between SAA occupancy and detection probabilities, environmental variables, and management effects were examined in 141 randomly selected perennial streams in commercial forests west of the Cascade Crest in Oregon and Washington from July to October, 2006. Giant salamander occupancy varied by stream substrate type (i.e., consolidated vs. unconsolidated geologies) and was positively associated with stand age. Torrent salamander occupancy varied by species, was positively associated with channel gradient, and was reduced in the youngest and oldest sampled stands. Tailed frog occupancy was negatively associated with the presence of crayfish, negatively associated with low and high bankfull widths, and positively associated with stand age, although stands less than 5 years old had occupancy rates >50% in the absence of crayfish. Mean detection rates were less than 1 for all three genera (0.85, 0.66, and 0.63 for Dicamptodon, Rhyacotriton, and Ascaphus, respectively), which indicates that conclusions from previous research about relationships between SAA occupancy, environmental variables, and forest practices have an unknown element of uncertainty, particularly if detection rates co-vary with habitat change. We believe that our study is the first to present unbiased estimates of occupancy and detection parameters for SAA on forested landscapes in Oregon and Washington.