Pollen analysis on a 9.54-m sediment core from lake Chignahuapan in the upper Lerma basin, the highest intermontane basin in Central Mexico (2570 m asl), documents vegetation and limnological changes over the past ∼23,000 14C yr. The core was drilled near the archaeological site of Santa Cruz Atizapán, a site with a long history of human occupation, abandoned at the end of the Epiclassic period (ca. 900 AD). Six radiocarbon AMS dates and two well-dated volcanic events, the Upper Toluca Pumice with an age of 11,600 14C yr B.P. and the Tres Cruces Tephra of 8500 14C yr B.P., provide the chronological framework for the lacustrine sequence. From ca. 23,000 14C yr B.P. to ca. 11,600 14C yr B.P. the plant communities were woodlands and grasslands based on the pollen data. The glacial advances MII-1 and MII-2 correlate with abundant non-arboreal pollen, mainly grasses, from ca. 21,000 to 16,000 14C yr B.P., and at ca. 12,600 14C yr B.P. During the late Pleistocene, lake Chignahuapan was a shallow freshwater lake with a phase of lower level between 19,000 and 16,000 14C yr B.P. After 10,000 14C yr B.P., tree cover in the area increased, and a more variable lake level is documented. Late Holocene (ca. 3100 14C yr B.P.) deforestation was concurrent with human population expansion at the beginning of the Formative period (1500 B.C.). Agriculture and manipulation of the lacustrine environment by human lakeshore populations appear at 1200 14C yr B.P. (550 A.D.) with the appearance of Zea mays pollen and abundant charcoal particles.