Climate change has increased the intensity and frequency of seasonal droughts, which could fundamentally affect the terrestrial carbon (C) cycle. However, as the second-largest terrestrial C flux, soil respiration (Rs) and its heterotrophic (Rh) and autotrophic (Ra) components in response to seasonal drought are unclear. To investigate the effect of seasonal drought on the patterns and mechanisms of Rs and its components, a two-year continuous Rs measurement experiment was conducted in typical rain-fed managed alfalfa (Medicago sativa L.) fields on the Loess Plateau in China. The results showed that the ranges of Rs, Rh and Ra in the four seasons of managed alfalfa fields on the Loess Plateau were 0.45–3.70, 0.13–2.27, and 0.33–2.14 μmol m−2 s−1, respectively. There was no significant difference in the average annual Rs between the two years (P > 0.05). Both spring and summer droughts significantly decreased Rs; however, the seasonal Rh and Ra had different patterns under spring and summer droughts. Spring drought significantly reduced the seasonal Rh by 35.19 % but increased Ra by 20.35 %. In contrast, summer drought significantly increased the seasonal Rh by 45.51 % but decreased the Ra by 35.05 %. The differential response of Ra to seasonal drought was attributed to the opposite responses of the leaf area index (LAI) and photosynthetic rate to spring and summer drought, while Rh was related to the contrasting microorganism responses to spring drought and the pulse effect of rainfall following summer drought. Our study highlights the contrasting responses of Ra and Rh to seasonal drought. Spring drought significantly reduced the relative contribution of Rh to Rs, but summer drought increased the relative contribution of Rh to Rs. These results suggest that future increases in the frequency of summer droughts may accelerate the turnover of soil C and further affect the stability of soil C stocks in semi-arid regions.