The network coverage is a big problem in ocean communication, and there is no low-cost solution in the short term. Based on the knowledge of Mobile Delay Tolerant Network (MDTN), the mobility of vessels can create the chances of end-to-end communication. The mobility pattern of vessel is one of the key metrics on ocean MDTN network. Because of the high cost, few experiments have focused on research of vessel mobility pattern for the moment. In this paper, we study the traces of more than 4000 fishing and freight vessels. Firstly, to solve the data noise and sparsity problem, we design two algorithms to filter the noise and complement the missing data based on the vessel’s turning feature. Secondly, after studying the traces of vessels, we observe that the vessel’s traces are confined by invisible boundary. Thirdly, through defining the distance between traces, we design MR-Similarity algorithm to find the mobility pattern of vessels. Finally, we realize our algorithm on cluster and evaluate the performance and accuracy. Our results can provide the guidelines on design of data routing protocols on ocean MDTN.