Background & Aim Currently, it remains a challenge to prepare extracellular vesicles (EVs) to high purity. Neither fractionation by density nor by size alone is sufficient to separate EVs from all contaminants e.g. high and low density lipoprotein (HDL/LDL) and adherent proteins. For now, a time consuming combination of two methods (density and size separation) is required to enrich EVs to high purity at the expense of time and low recovery. A fast and efficient alternative is represented by Free Flow Electrophoresis (FFE). It is a well-established (semi-) preparative method to separate analytes with inherent difference of charge density and/or difference of pI-value. Methods, Results & Conclusion A Free Flow Interval Zone Electrophoresis (FF-IZE) method has been developed, for the purification and isolation of EVs as well DNA and RNA from human plasma samples, using a set of buffer media of different pH-values ranging from pH 8.0 to pH 4.8. Upon processing supernatants of mesenchymal stem/stromal cells (MSCs) cultured in the presence of 10% human platelet lysate, EVs are recovered in a small number of FFE fractions lacking most proteins of the conditioned media. Currently, we characterize the identified fractions in more detail. Prepared EVs are quantified by Nano Particle Tracking Analysis (NTA) and imaging flow cytometry. Furthermore, the presence of several EV markers and the absence of contaminants are analyzed by Western Blot and mass spectrometry-based proteomics. We conclude FFE is a feasible and quick method to highly purify EVs in an accurate manner. Currently, it remains a challenge to prepare extracellular vesicles (EVs) to high purity. Neither fractionation by density nor by size alone is sufficient to separate EVs from all contaminants e.g. high and low density lipoprotein (HDL/LDL) and adherent proteins. For now, a time consuming combination of two methods (density and size separation) is required to enrich EVs to high purity at the expense of time and low recovery. A fast and efficient alternative is represented by Free Flow Electrophoresis (FFE). It is a well-established (semi-) preparative method to separate analytes with inherent difference of charge density and/or difference of pI-value. A Free Flow Interval Zone Electrophoresis (FF-IZE) method has been developed, for the purification and isolation of EVs as well DNA and RNA from human plasma samples, using a set of buffer media of different pH-values ranging from pH 8.0 to pH 4.8. Upon processing supernatants of mesenchymal stem/stromal cells (MSCs) cultured in the presence of 10% human platelet lysate, EVs are recovered in a small number of FFE fractions lacking most proteins of the conditioned media. Currently, we characterize the identified fractions in more detail. Prepared EVs are quantified by Nano Particle Tracking Analysis (NTA) and imaging flow cytometry. Furthermore, the presence of several EV markers and the absence of contaminants are analyzed by Western Blot and mass spectrometry-based proteomics. We conclude FFE is a feasible and quick method to highly purify EVs in an accurate manner.
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