Free-range Farms Research Articles

Approach to creating an intelligent system for free-range livestock farming

Approach to creating an intelligent system for free-range livestock farming

ANALISIS PENDAPATAN USAHA PETERNAKAN SKALA MENENGAH PROGRAM UMKM PADA RUMAH PEMOTONGAN AYAM KAMPUNG(STUDI KASUS RPA LA’TANSA DI KECAMATAN PALU SELATAN KELURAHAN BIROBULI UTARA)

Central Sulawesi Province has an area of ​​61,841.29 km^2 consisting of 13 Regencies/Cities with a population of 2,921,715 people or 719,031 households and a population of 77,004 free-range chickens spread across several areas of Palu City (Central Statistics Agency, 2016). Palu City as an autonomous region has various resources that can be developed to achieve the main goal of economic development, so that it can increase the number and types of employment opportunities for regional communities so that community welfare is more equitable. In an effort to achieve this goal, the government must be able to develop potential economic sectors, one of which is free-range chicken farming so that it develops as a leading sector. With the hope that this sector will be able to contribute to the community's economy, especially medium-sized farms with MSME capital. Extensive-traditional or free range chicken rearing system. Even though there are breeders who carry out intensive cultivation, they are still very limited in terms of capital and marketing. This is what makes the total production of the free-range chicken population in the city of Palu lower when compared to other cities, so it is necessary to conduct a study on income analysis of the medium-scale free-range chicken business for the UMKM program in the City of Palu. The aim of this research is to find out how much income middle-scale chicken traders earn from the MSME program at RPA LA Tansa, South Palu District, North Bureaubuli Village and to find out the feasibility of selling free-range chickens at RPA Latansa. This research will be carried out at RPA Latansa from February to April 2024 . This research method uses a survey method. The research design uses a type of quantitative descriptive research, namely a research procedure that uses descriptive data in the form of written or spoken words (interviews) with respondents, then the research data obtained is simplified in table form by displaying the number and average, then analyzed again sequentially. descriptive. The data analysis used is Revenue Analysis, Cost Analysis, Income Analysis and R/C Ration business feasibility analysis. Based on an analysis of income calculations, the Latan'sa chicken slaughterhouse (RPA) business income for one month is IDR. 38,722,708 which shows that the Latan'sa chicken slaughterhouse (RPA) business is making a profit

A simple color absorption analysis of colorimetric loop-mediated isothermal amplification for detection of Raillietina spp. in clinical samples using a 3D-printed tube holder coupled with a smartphone camera and notebook screen.

Asimple method has been developedfor semi-quantitative analysis of the colorimetric output of loop-mediated isothermal amplification (LAMP) using a 3D-printed tube holder with a smartphone and notebook for the detection of Raillietina, which is the cause of Raillietiniasis affecting free-range chicken farming. In this method, a light is directedfrom a notebook screen to the LAMP products in the tube holder and the color absorption of the LAMP products is measured by using the appropriate smartphone application. It was found that the malachite green dye-coupled LAMP (MaG-LAMP) assay showed the highest sensitivity and specificity for detecting Raillietina without any cross-reaction with other related parasites and hosts. The limit of detection was 10fg/μL of DNA. A total of 60 fecal samples were infectively confirmed by microscopic examination and the results of microscopy compared with those of MaG-LAMP and triplex PCR assays. Microscopy and MaG-LAMP based on the color absorption demonstrated high agreement in Raillietina detection with kappa = 1. Rapid, simple, cost-effective, and easy interpretation of colorimetric LAMP assays and their high sensitivity make them superior to PCR and morphological investigation, demonstrating the feasibility of this assay in point-of-care screening to support farm management and solve chicken health problems. Our study presentsis an alternative diagnostic method using semi-quantitative analysis of colorimetric LAMP based on the differing solution color absorptions between positive and negative reactions for infectious disease diagnosis.

Drinking Water and Biofilm as Sources of Antimicrobial Resistance in Free-Range Organic Broiler Farms.

Drinking water distribution systems (DWDSs) represent an ideal environment for biofilm formation, which can harbor pathogenic and antimicrobial-resistant bacteria. This study aimed to assess longitudinally the microbial community composition and antimicrobial resistance (AMR), as determined by 16S rRNA NGS and qPCR, respectively, in drinking water (DW) and biofilm from DWDSs, as well as faeces, of free-range organic broiler farms. The role of DWDSs in AMR gene (ARG) dissemination within the farm environment and transmission to animals, was also assessed. DW and biofilm microbial communities differed from those of faecal samples. Moreover, potentially pathogenic and opportunistic bacteria (e.g., Staphylococcaceae) were identified in water and biofilms. High prevalence and abundance of ARGs conferring resistance to carbapenems (i.e., blaNDM), 3rd and 4th generation cephalosporins (i.e., blaCMY-2), (fluoro)quinolones (i.e., qnrS), and polymyxins (i.e., mcr-3 and mcr-5) were detected in DW, biofilm, and faecal samples, which is of concern for both animal and human health. Although other factors (e.g., feed, pests, and wildlife) may contribute to the dissemination of AMR in free-range organic poultry farms, this study indicates that DWDSs can also play a role.

Swinepox virus: an unusual outbreak in free-range pig farms in Sicily (Italy)

BackgroundTwo outbreaks of swinepox were investigated in free-range domestic pig farms located in the northeastern side of Sicily, Italy. The disease is generally self-limiting with a low mortality rate, but morbidity can reach high rates in case of poor sanitary conditions, improper husbandry practices and ectoparasitic infestation. The presented cases are the first ever reported on the island and part of the few cases reported in domestic pigs.Case presentationCarcasses condemned at the slaughterhouse and deceased pigs from Farm A and Farm B respectively, were referred for post-mortem examination and further investigations, with a strong suspect of SwinePox virus (SWPV) infection. Twelve deceased pigs were examined in total, showing poor body condition and pustular lesions scattered all over the cutaneous surfaces. Moreover, pigs from Farm B showed ocular lesions classified from Grade I to IV (from mild conjunctivitis to severe keratoconjunctivitis with corneal oedema, opacity, and ulcers). Final diagnosis was pursued by the microscopic assessment of skin lesions in both farms, which revealed the typical SWPV-lesion appearance, such as severe and disseminated ulcerative dermatitis and suspected inclusion bodies multifocally observed in the epidermis. Moreover, negative staining Electron Microscopy (nsEM) was performed on skin lesions and ocular swabs from Farm B, revealing in two samples the presence of brick-shaped viral particles, 220 nm long and 160 nm wide, with irregularly arranged surface tubules, identified as SWPV. The gene encoding the 482-bp fragment of the virus late transcription factor–3 was detected by PCR and sequencing revealed 99.79% identity and 100% query-cover with a strain previously isolated in Germany. Field clinical assessment was then performed in Farm B, revealing high overcrowding, poor sanitary conditions and improper husbandry practices, which are relevant risk factors for SWPV transmission.ConclusionsThe present is the first case report of SWPV in free-range pigs raised in Sicily, an island of the Southern coast of Italy, and wants to raise awareness on a neglected disease, and cause of animal health and welfare issues.

Unusual A(H1N7) influenza A virus isolated from free-range domestic ducks in Bangladesh, 2023.

In Bangladesh, free-range duck farms provide opportunities for the generation of novel influenza A viruses as evidenced by the emergence of an unusual A(H1N7) virus in 2023. Continued surveillance of such environments for the potential emergence of influenza A viruses with novel properties remains a priority.

Development and use of Biocheck.UGent™ scoring system to quantify biosecurity in conventional indoor (turkey, duck, breeder) and free-range (layer and broiler) poultry farms

To assess and enhance the application of biosecurity measures in poultry farming, an objective measurement tool (Biocheck.UGent™) was already available for broiler and layer. This study describes the development, validation and application of a risk-based weighted scoring tool for breeder, turkey, duck, free-range layer and free-range broiler production. In collaboration with an expert panel (n= 38), five different questionnaires were developed, following the format of the existing Biocheck.UGent scoring tools. Weights were attributed to external (7–9 subcategories) and internal (3–4 subcategories) biosecurity categories, as well as to the corresponding individual questions within each subcategory. The biosecurity measures were prioritized and weighed based on their relative importance in preventing disease transmission. Upon completion of the questionnaire, and upload of all answers to the Biocheck.UGent website, the algorithm generates a biosecurity score varying between ‘’0’’ which equals the total absence of any biosecurity measure up to ‘’100’’ which refers to full application of all biosecurity measures. The final scoring systems are available online (https://biocheckgent.com/en) for free and have been used to assess biosecurity in 70 breeders, 100 turkeys, 23 ducks, 16 free-range broilers, and 15 free-range layer farms originating from 12 countries so far. On average, the overall biosecurity score (mean ± std. dev) was 78 ± 7 % for breeders, 73 ± 11 % for turkeys, 71 ± 8 % for ducks, 73 ± 8 % for free-range layers and 70 ± 13 % for free-range broilers. There were significant differences (p < 0.05) in biosecurity (both at the overall and subcategory levels) across different poultry types. The overall farm biosecurity score for breeders was significantly higher than that for turkey (p <.001) and duck production (p = 0.001). External biosecurity levels were highest in breeders in comparison to turkeys (p < 0.001), ducks (p = 0.008) and broiler free-range (p = 0.005). There was a notable difference in internal biosecurity levels between duck and turkey (p = 0.041) production as well. The study contributed to the poultry biosecurity database which allows benchmarking of the biosecurity levels of the users’ farm results to national or international averages, indicating room for improvement and aiding to motivate stakeholders to enhance their biosecurity levels.

Does the Farming Method Influence the Porcine Vomeronasal Organ Condition? A Histological Study.

The vomeronasal organ (VNO) plays a key role in mammals, since it detects pheromones thus enabling social interactions between congeners. VNO inflammatory changes have been shown to severely impact animal life, leading to impaired social interactions in groups, such as in pigs. Environmental air is known to be strongly modified in farms, and it is suspected to be one of the causes of this alteration. This study aimed to compare via histology the VNOs of pigs housed in intensive conditions (n = 38) to those of pigs housed in free-range farming conditions (n = 35). VNO sections were stained in hematoxylin and eosin to assess the presence of nonsensory and sensory epithelium alterations and collagenolysis. The nonsensory epithelium was significantly more inflamed in animals in free-range farming conditions than those in intensive conditions (p < 0.0001) and was more strongly affected by signs of collagenolysis (p < 0.0001). The sensory epithelium seemed to be less altered by the different environmental conditions (p = 0.7267). These results suggest that species-typical pig behaviors, such as digging and rooting for food, could facilitate the presence of microparticles in the oral cavity and their entrance into the vomeronasal canals, leading to changes to the VNO.

Effect of genotype and nutritional and environmental challenges on growth curve dynamics of broiler chickens

The present study aimed to compare the dynamics of growth of various chicken genotypes exposed to heat stress, low-input diets, and free-range farming by using Gompertz model to gain insights into their capabilities to face environmental and nutritional challenges. Three in vivo trials (T1: heat stress, T2: low-input diets, and T3: free-range system) were conducted, involving a total of 671 animals. Five chicken genotypes were employed in each trial: 2 Italian local breeds, Bionda Piemontese (BP) and Robusta Maculata (RM), along with their crossbreeds with Sasso hens (BP×SA and RM×SA), and a commercial hybrid (Ross 308). One-day-old male chicks were individually identified, and the 5 genotypes were randomly allocated to different challenging conditions: T1 involved 2 environmental temperatures (thermoneutral vs. high temperature); T2 involved 2 diets (standard vs. low-input); T3 involved 2 rearing systems (conventional vs. free-range). The chickens were weighed once a week from their arrival until slaughtering, and the data were used to build growth curves using the Gompertz model. Chickens from different genotypes were slaughtered at varying ages based on their maturity. In all trials, the challenging conditions significantly reduced adult body weight (A; -31.0%) and maximum growth rate (MGR; -25.6%) of Ross chickens. In contrast, in T1 and T2, no significant changes were observed in the main growth curve parameters of local breeds and crossbreeds, while under free-range conditions, there was even an increase in the A and MGR of these genotypes. The crossbreeding was effective in increasing A and MGR of BP (+30.5% in BP×SA), as well as in improving the precocity and MGR of RM (+19.5% in RM×SA). Our findings highlight the effectiveness of the Gompertz model as a tool for evaluating birds' adaptability and confirm the greater ability of local breeds and crossbreeds to adapt to different challenges. In conclusion, our methodological approach could be used to choose the genotype most suited to the environmental context and confirm the potential advantages of crossbreeding for enhancing resilience and sustainability.

Movement-driven modelling reveals new patterns in disease transmission networks.

Interspecific interactions are highly relevant in the potential transmission of shared pathogens in multi-host systems. In recent decades, several technologies have been developed to study pathogen transmission, such as proximity loggers, GPS tracking devices and/or camera traps. Despite the diversity of methods aimed at detecting contacts, the analysis of transmission risk is often reduced to contact rates and the probability of transmission given the contact. However, the latter process is continuous over time and unique for each contact, and is influenced by the characteristics of the contact and the pathogen's relationship with both the host and the environment. Our objective was to assess whether a more comprehensive approach, using a movement-based model which assigns a unique transmission risk to each contact by decomposing transmission into contact formation, contact duration and host characteristics, could reveal disease transmission dynamics that are not detected with more traditional approaches. The model was built from GPS-collar data from two management systems in Spain where animal tuberculosis (TB) circulates: a national park with extensively reared endemic cattle, and an area with extensive free-range pigs and cattle farms. In addition, we evaluated the effect of the GPS device fix rate on the performance of the model. Different transmission dynamics were identified between both management systems. Considering the specific conditions under which each contact occurs (i.e. whether the contact is direct or indirect, its duration, the hosts characteristics, the environmental conditions, etc.) resulted in the identification of different transmission dynamics compared to using only contact rates. We found that fix intervals greater than 30 min in the GPS tracking data resulted in missed interactions, and intervals greater than 2 h may be insufficient for epidemiological purposes. Our study shows that neglecting the conditions under which each contact occurs may result in a misidentification of the real role of each species in disease transmission. This study describes a clear and repeatable framework to study pathogen transmission from GPS data and provides further insights to understand how TB is maintained in multi-host systems in Mediterranean environments.

Evaluation of the Quality of Guinea Fowl (Numida meleagris) Eggs from Free-Range Farming Depending on the Storage Period and Age of Laying Hens.

The aim of the study was to determine the changes occurring in the eggs of helmeted guinea fowl (Numida meleagris) from free-range farming in relation to the laying season and storage time. The experimental material consisted of 360 guinea fowl eggs, collected in the first, second and third laying seasons and stored for 7, 14 and 21 days. After each period, physical and physicochemical characteristics of the eggs were determined, as well as the basic chemical composition and mineral content of the albumen and yolk and the yolk fatty acid profile. The age of the guinea fowls affected certain physical parameters of the eggs. The egg weight, shape index and shell thickness increased with the age of the laying hens; however, a decrease in the proportion of shell in the egg was demonstrated. Storage time had a significant effect on egg weight, weight loss during storage and air cell height. Significant differences were found in the chemical composition of guinea fowl eggs depending on the age of the laying hens. Eggs obtained from older laying hens were characterized by higher yolk fat content and lower ash content, while the albumen contained higher water content and lower ash content. During the three-year laying period, changes were observed in the mineral composition of the eggs. The fatty acid profile underwent significant changes; however, no important differences were observed in the total content of SFA, MUFA, PUFA and n-6 fatty acids. Conversely, significant differences were found for n-3 acids and the n-6/n-3 ratio. Eggs in the first and second laying seasons exhibited the most favorable composition. The slow dynamics of changes occurring in successive laying seasons and egg storage time indicated that the raw material studied was safe and could be used by consumers.

5. Development of a method for the evaluation of the impact of photovoltaic roof shelters on the outdoor run of free-range poultry farming

5. Development of a method for the evaluation of the impact of photovoltaic roof shelters on the outdoor run of free-range poultry farming

An efficient transformer network for detecting multi-scale chicken in complex free-range farming environments via improved RT-DETR

Accurate detection and localization of chicken targets in complex environments are the foundation of intelligent free-range chicken farming. However, commercial free-range chicken farming poses several challenges to detection methods, including complex and variable backgrounds, multi-scale targets, aggregated occlusion and changes in the posture of chicken. While there has been significant research on object detection algorithms based on convolutional neural networks, these algorithms have limited effectiveness in detecting small targets and generalizing to new scenes. Therefore, this study proposes a highly accurate and strongly generalizable chicken object detection model called Efficient Multi-scale Chicken DETR (EMSC-DETR), which is based on an improved Real-Time DEtection TRansformer (RT-DETR). To address the issue of easily losing small target features, a new efficient transformer module called space-to-depth transformer module (SDTM) is introduced. SDTM includes space-to-depth (SPD) and BiFormer modules, which facilitate deep interaction between local and global features, and significantly improve the computational efficiency of the transformer. Additionally, to overcome the detection and differentiation difficulties caused by chicken aggregation occlusion, the transformer encoder of EMSC-DETR incorporates a contextual transformer (CoT). CoT utilizes rich contextual information among the nearest neighbors to enhance the feature representation of high-level features, enabling more accurate localization of overlapped chicken targets. To evaluate the proposed model in complex environments, 14 scene data were collected from two fields and divided into training, validation, testing sets and three independent testing sets with unknown scenes. Experimental results show that the proposed EMSC-DETR obtains the best detection performance in the testing set, with an AP50 of 98.6%, surpassing other state-of-the-art models of similar size. In the three independent testing sets, the proposed model shows improvements of 8.2%, 9.2% and 28.3% in the AP50 compared to the original RT-DETR, respectively. Moreover, the model exhibits superior generalization ability for unknown scenes compared to other state-of-the-art models. Robustness and fine-tuning experiments further confirm the reliability and application potential of EMSC-DETR in detecting free-range chickens, which is crucial for complex commercial farming. This study is expected to provide references and new ideas for precision livestock farming.

Free-range poultry farming in a lowland suburban area increased the health risk of heavy metal contamination

Free-range poultry farming in a lowland suburban area increased the health risk of heavy metal contamination

First molecular insights into gastrointestinal helminths of domestic birds in the Caspian Sea Littoral of Iran with an emphasis on the One Health concern

The current investigation was carried out during the period from July 2022 to March 2023, aiming to investigate the prevalence of gastrointestinal helminths in domestic birds collected from traditional markets in Guilan province. One hundred forty-eight domestic birds, including chickens (Gallus gallus domesticus), domestic ducks (Anas platyrhynchos domesticus), greylag geese (Anser anser), and domestic turkeys (Meleagris gallopavo domesticus) were examined. Totally, 42.56% of the investigated birds were positive for helminthic parasites. Morphological analysis revealed varying infection rates among birds: Echinostoma revolutum (5.40%), Hypoderaeum conoideum (2.02%), Cloacotaenia megalops (0.67%), Hymenolepididae family (4.05%), Ascaridia galli (16.89%), and Heterakis gallinarum (4.72%). The investigation involved molecular analysis of the 18S and ITS1 + 5.8S + ITS2 rRNA gene regions. The findings indicated that the 18S region of nematode isolates exhibited a similarity of 92 to 100% with sequences in the GenBank, whereas trematode and cestode isolates showed a gene similarity ranging from 88 to 99%. The ITS regions of nematode, trematode, and cestode isolates exhibited genetic similarities ranging from 87 to 100%, 73–99%, and 75–99%, respectively. Furthermore, phylogenetic analysis confirmed the categorization of the identified species within the Ascaridiidae, Heterakidae, Hymenolepididae, and Echinostomatidae families, indicating their close affinity with previously documented species. Implementing precise control measures such as consistent monitoring, adequate sanitation protocols, and administering anthelmintic treatments is crucial for effectively managing parasitic infections in free-range and backyard poultry farms. Additionally, conducting further surveys is advisable to assess the impact of these parasites on the health and productivity of poultry in the investigated area.

Time series of chicken stool metagenomics and egg metabolomics in changing production systems: preliminary insights from a proof-of-concept

BackgroundDifferent production systems of livestock animals influence various factors, including the gut microbiota.MethodsWe investigated whether changing the conditions from barns to free-range chicken farming impacts the microbiome over the course of three weeks. We compared the stool microbiota of chicken from industrial barns after introducing them either in community or separately to a free-range environment.ResultsOver the six time points, 12 taxa—mostly lactobacilli—changed significantly. As expected, the former barn chicken cohort carries more resistances to common antibiotics. These, however, remained positive over the observed period. At the end of the study, we collected eggs and compared metabolomic profiles of the egg white and yolk to profiles of eggs from commercial suppliers. Here, we observed significant differences between commercial and fresh collected eggs as well as differences between the former barn chicken and free-range chicken.ConclusionOur data indicate that the gut microbiota can undergo alterations over time in response to changes in production systems. These changes subsequently exert an influence on the metabolites found in the eggs. The preliminary results of our proof-of-concept study motivate larger scale observations with more individual chicken and longer observation periods.

Serological investigation and isolation of Salmonella abortus equi in horses in Xinjiang

BackgroundSalmonella enterica subspecies enterica serovar abortus equi (S. abortus equi) is one of the main pathogens that causes abortion in pregnant horses and donkeys, which was highly infectious and greatly restricts the healthy development of the horse industry.ObjectivesIn order to investigate the prevalence and biological characteristics of S. abortus equi in different regions and breeds of horses in Xinjiang.MethodsThis study conducted ELISA detection of S. abortus equi antibodies on serum samples of 971 horses collected from three large-scale horse farms and five free-range horse farms in Yili Prefecture and Bayingol Mongolian Autonomous Prefecture of Xinjiang from 2020 to 2023. On this basis, bacterial isolation, culture, identification, and drug sensitivity tests were conducted on 42 samples of aborted foal tissues and 23 mare vaginal swabs.ResultsThe results showed that the positive rate of S. abortus equi antibody was as high as 20.91% in 971 horse serum samples. Among them, the positive rate in the Ili region (29.09%) was significantly higher than that in the Bayingole region (11.24%), and the positive rate in mares (22.45%) was higher than that in stallions (14.05%). In terms of horse breeds, the positive rates of self-propagating thoroughbred horses, half-bred horses, Ili horses and Yanqi horses were 43.22%, 28.81%, 14.72% and 11.24% respectively. In addition, S. abortus equi was more susceptible to juvenile and elderly horses, with positive rates of 70.00%and 41.86%, respectively, both of which were significantly higher than young (10.97%) and adult (19.79%) horses. Further, 9 strains of S. abortus equi were obtained through bacterial isolation, culture and identification, which were resistant to five antibiotics (Clarithromycin, Clindamycin, penicillin, Sulfamethoxazole and Rifampicin), and sensitive to 13 antimicrobial agents (Amoxicillin, Ciprofloxacin and Gentamicin, et al.).ConclusionThere was a high infection rate of S. abortus equi in Ili Prefecture and self-propagating thoroughbred horses, and juvenile or old mares were more susceptible, which will provide scientific basis for the prevention of S. abortus equi infection in different regions and breeds of horses in Xinjiang.

Research on duck egg recognition algorithm based on improved YOLOv4

ABSTRACT 1. The following study addressed the problem of small duck eggs as challenging to detect and identify for pick up in complex free-range duck farm environments. It introduces improvements to the YOLOv4 convolutional neural network target detection algorithm, based on the working conditions of egg-picking robots. 2. Specifically, one scale of anchor boxes was removed from the prediction network, and a duck egg labelling dataset was established to make the improved algorithm YOLOv4-ours better match the working state of egg-picking robots and enhance detection performance. 3. Through multiple comparative experiments, the YOLOv4-ours object detection algorithm exhibited superior overall performance, achieving a precision of 98.85%, recall of 96.67%, and an average precision of 98.60% and F1 score increased to 97%. Compared to the original YOLOv4 model, these improvements represented increases of 1.89%, 3.41%, 1.32%, and 1.04%, respectively. Furthermore, detection time was reduced from 0.26 seconds per image to 0.20 seconds. 4. The enhanced model accurately detected duck eggs in free-range duck housing, effectively meeting the real-time egg identification and picking requirements.

Whole genome sequence-based characterization of Campylobacter isolated from broiler carcasses over a three-year period in a big poultry slaughterhouse reveals high genetic diversity and a recurring genomic lineage of Campylobacter jejuni

Campylobacter is among the most frequent agents of bacterial gastroenteritis in Europe and is primarily linked to the consumption of contaminated food. The aim of this study was to assess genomic diversity and to identify antimicrobial resistance and virulence genes of 155 Campylobacter isolated from broiler carcasses (neck skin samples) in a large-scale Swiss poultry abattoir over a three-year period. Samples originated from broilers from three different types of farming systems (particularly animal-friendly stabling (PAFS), free-range farms, and organic farms).Campylobacter jejuni (n = 127) and Campylobacter coli (n = 28) were analysed using a whole genome sequencing (WGS) approach (MiniSeq; Illumina). Sequence types (STs) were determined in silico from the WGS data and isolates were assigned into complex types (CTs) using the cgMLST SeqSphere+ scheme. Antimicrobial resistance genes were identified using the Resistance Gene Identifier (RGI), and virulence genes were identified using the virulence factor database (VFDB).A high degree of genetic diversity was observed. Many sequence types (C. jejuni ST19, ST21, ST48, ST50, ST122, ST262 and C. coli ST827) occurred more than once and were distributed throughout the study period, irrespective of the year of isolation and of the broiler farming type. Antimicrobial resistance determinants included blaOXA and tet(O) genes, as well as the T86I substitution within GyrA. Virulence genes known to play a role in human Campylobacter infection were identified such as the wlaN, cstIII, neuA1, neuB1, and neuC1. Subtyping of the Campylobacter isolates identified the occurrence of a highly clonal population of C. jejuni ST21 that was isolated throughout the three-year study period from carcasses from farms with geographically different locations and different farming systems.The high rate of genetic diversity observed among broiler carcass isolates is consistent with previous studies. The identification of a persisting highly clonal C. jejuni ST21 subtype suggests that the slaughterhouse may represent an environment in which C. jejuni ST21 may survive, however, the ecological reservoir potentially maintaining this clone remains unknown.

Seasonal changes in bird communities on poultry farms and house sparrow-wild bird contacts revealed by camera trapping.

Wild birds are considered reservoirs of poultry pathogens although transmission routes have not been conclusively established. Here we use camera trapping to study wild bird communities on commercial layer and red-legged partridge farms over a one-year timeframe. We also analyze direct and indirect interactions of other bird species with the house sparrow (Passer domesticus), a potential bridge host. We conducted camera trapping events between January 2018 and October 2019, in two caged layer farms, one free-range layer farm, and two red-legged partridge farms in South-Central Spain. We observed wild bird visits on all types of farms, with the significantly highest occurrence on red-legged partridge farms where food and water are more easily accessible, followed by commercial caged layer farms, and free-range chicken farms. The house sparrow (Passer domesticus) followed by spotless starlings (Sturnus unicolor) was the most encountered species on all farms, with the highest frequency in caged layer farms. On partridge farms, the house sparrow accounted for 58% of the wild bird detections, while on the free-range chicken farm, it made up 11% of the detections. Notably, the breeding season, when food and water are scarce in Mediterranean climates, saw the highest number of wild bird visits to the farms. Our findings confirm that the house sparrow, is in direct and indirect contact with layers and red-legged partridges and other wild birds independent of the type of farm. Contacts between house sparrows and other bird species were most frequent during the breeding season followed by the spring migration period. The species most frequently involved in interactions with the house sparrow belonged to the order Passeriformes. The study provides a comparative description of the composition and seasonal variations of bird communities in different types of layer/ poultry farms in Southern Spain i.e. a Mediterranean climate. It confirms the effectiveness of biosecurity measures that restrict access to feed and water. Additionally, it underscores the importance of synanthropic species, particularly the house sparrow, as potential bridge vector of avian pathogens.