FR Light Research Articles

LncRNAs involved in the Shade Avoidance Syndrome (SAS) in Arabidopsis thaliana

BackgroundPlant long non-coding RNAs (lncRNAs) have important regulatory roles in responses to various biotic and abiotic stresses, including light quality. However, no lncRNAs have been specifically linked to the Shade Avoidance Response (SAS).ResultsTo better understand the involvement of lncRNAs in shade avoidance, we examined RNA-seq libraries for lncRNAs with the potential to function in the neighbor proximity phenomenon in Arabidopsis thaliana (A. thaliana). Using transcriptomes generated from seedlings exposed to high and low red/far-red (R/FR) light conditions, we identified 13 lncRNA genes differentially expressed in cotyledons and 138 in hypocotyls. To infer possible functions for these lncRNAs, we used a ‘guilt-by-association’ approach to identify genes co-expressed with lncRNAs in a weighted gene co-expression network. Of 34 co-expression modules, 10 showed biological functions related to differential growth. We identified three potential lncRNAs co-regulated with genes related to SAS. T-DNA insertions in two of these lncRNAs were correlated with morphological differences in seedling responses to increased FR light, supporting our strategy for computational identification of lncRNAs involved in SAS.ConclusionsUsing a computational approach, we identified multiple lncRNAs in Arabidopsis involved in SAS. T-DNA insertions caused altered phenotypes under low R/FR light, suggesting functional roles in shade avoidance. Further experiments are needed to determine the specific mechanisms of these lncRNAs in SAS.

Plant competition cues activate a singlet oxygen signaling pathway in Arabidopsis thaliana.

Oxidative stress responses of Arabidopsis to reflected low red to far-red signals (R:FR ≈ 0.3) generated by neighboring weeds or an artificial source of FR light were compared with a weed-free control (R:FR ≈1.6). In the low R:FR treatments, induction of the shade avoidance responses (SAR) coincided with increased leaf production of singlet oxygen (1O2). This 1O2 increase was not due to protochlorophyllide accumulation and did not cause cell death. Chemical treatments, however, with 5-aminolevulinic acid (the precursor of tetrapyrrole biosynthesis) and glutathione (a quinone A reductant) enhanced cell death and growth inhibition. RNA sequencing revealed that transcriptome responses to the reflected low R:FR light treatments minimally resembled previously known Arabidopsis 1O2 generating systems that rapidly generate 1O2 following a dark to light transfer. The upregulation of only a few early 1O2 responsive genes (6 out of 1931) in the reflected low R:FR treatments suggested specificity of the 1O2 signaling. Moreover, increased expression of two enzyme genes, the SULFOTRANSFERASE ST2A (ST2a) and the early 1O2-responsive IAA-LEUCINE RESISTANCE (ILR)-LIKE6 (ILL6), which negatively regulate jasmonate level, suggested that repression of bioactive JAs may promote the shade avoidance (versus defense) and 1O2 acclimation (versus cell death) responses to neighboring weeds.

Supplementary Far-Red Light for Photosynthetic Active Radiation Differentially Influences the Photochemical Efficiency and Biomass Accumulation in Greenhouse-Grown Lettuce.

Adding far-red (FR, 700-800 nm) light to photosynthetic active radiation (400-700 nm) proved to be a possible approach to increasing plant biomass accumulation for lettuce production in indoor vertical farms with artificial lighting as a sole-source lighting. However, how FR light addition influences plant growth, development, and metabolic processes and the optimal value of FR photon flux density for greenhouse-grown lettuce under sunlight are still unclear. This work aims to quantify the value of supplementary FR light with different intensities on lettuce morphological and physiological characteristics in a greenhouse. Lettuce 'Dasusheng' (Lactuca sativa L.) was grown in a greenhouse under seven light treatments, including white plus red LEDs with FR photon flux density at 0, 10, 30, 50, 70, and 90 µmol m-2 s-1 (WR, WR + FR10, WR + FR30, WR + FR50, WR + FR70, and WR + FR90, respectively), and lettuce grown with sunlight only was marked as natural light (NL). FR light addition improved the electron transport flux per cross section and performance index (PIabs, PItotal) and decreased the changes in relative variable fluorescence of lettuce leaves compared to plants under NL. Specifically, the PIabs of lettuce leaves were 41%, 41%, 38%, 33%, 26%, and 25% lower under control than in plants under treatments WR + FR90, WR + FR70, WR + FR50, WR + FR30, WR + FR10, and WR, respectively. Leaf number, leaf area, and biomass accumulation of lettuce followed a quadratic function with increasing FR light intensity and were the highest under treatment WR + FR50. The shoot fresh weight and dry weight of lettuce were increased by 111% and 275%, respectively, under treatment WR + FR50 compared to NL. The contents of vitamin C, reducing sugar, total soluble sugar, and starch in lettuce showed a similar trend with biomass accumulation. In conclusion, with commonly used photosynthetic photon flux density (PPFD, 400-700 nm) around 200 μmol m-2 s-1, supplementary FR light intensity of 30~50 μmol m-2 s-1 was suggested to enhance the photochemistry efficiency, biomass accumulation, and carbohydrates' contents in greenhouse-grown lettuce.

Far-red light enrichment affects gene expression and architecture as well as growth and photosynthesis in rice.

Plants use light as a resource and signal. Photons within the 400-700 nm waveband are considered photosynthetically active. Far-red photons (FR, 700-800 nm) are used by plants to detect nearby vegetation and elicit the shade avoidance syndrome. In addition, FR photons have also been shown to contribute to photosynthesis, but knowledge about these dual effects remains scarce. Here, we study shoot-architectural and photosynthetic responses to supplemental FR light during the photoperiod in several rice varieties. We observed that FR enrichment only mildly affected the rice transcriptome and shoot architecture as compared to established model species, whereas leaf formation, tilleringand biomass accumulation were clearly promoted. Consistent with this growth promotion, we found that CO2-fixation in supplemental FR was strongly enhanced, especially in plants acclimated to FR-enriched conditions as compared to control conditions. This growth promotion dominates the effects of FR photons on shoot development and architecture. When substituting FR enrichment with an end-of-day FR pulse, this prevented photosynthesis-promoting effects and elicited shade avoidance responses. We conclude that FR photons can have a dual role, where effects depend on the environmental context: in addition to being an environmental signal, they are also a potent source of harvestable energy.

Neighbour‐detection causes shifts in allocation across multiple organs to prepare plants for light competition

Abstract To maximize their fitness, plants have to adjust their allocation strategy according to their abiotic and biotic environments. Plants can use the ratio of red to far‐red light (R:FR) to sense neighbours, allowing them to modify their growth in response to aboveground competition. In this study, we used supplemental FR light to artificially lower the R:FR of the lower leaves of common sunflowers (Helianthus annuus) to examine how plants change their growth in response to the threat of neighbours. We combined this treatment with a nitrogen fertilization treatment to investigate how responses to neighbour‐detection interact with nitrogen limitation. Plants grown in low R:FR increased in height at the expense of root growth, resulting in nitrogen limitation that restricted leaf growth. However, we found that plants reduced their nitrogen investment into leaves in low R:FR. By weakening the nitrogen sink strength of these lower leaves before they experienced low photosynthetically active radiation, plants were able to preemptively allocate nitrogen to leaves higher in the canopy. Plants responded to the perception of neighbours by simultaneously diverting resources from root growth to stem elongation and from leaves threatened by neighbours to leaves that would pose a threat to neighbours. This whole‐plant response to neighbour‐detection enables plants to change their allocation in a way that simultaneously manages their limited nitrogen and prepares them for future light competition. Read the free Plain Language Summary for this article on the Journal blog.

Far-red radiation management for lettuce growth: Physiological and morphological features leading to energy optimization in vertical farming

Recently, far-red wavelengths (FR, 700–750 nm) have been largely investigated in indoor cultivation systems due to their morphological effects on plants (e.g., leaf expansion and stem elongation), resulting also in increasing yield. This work investigated the effect of substituting part of the red (R) and blue (B) radiation with far-red radiation, while keeping constant the photon flux density, in the light spectrum for lettuce grown in a vertical farm. Lettuce (Lactuca sativa var. Canasta) plants were transplanted and grown in an ebb-and-flow system for 29 days. During the cycle, plants were subjected to five different light treatments: a control treatment consisting of an optimized R and B spectrum (ratio of 3; RB3) with a photosynthetic photon flux density of 200 µmol m−2 s−1, and four treatments in which R and B were partially replaced by 10, 30, 50 and 70 µmol m−2 s−1 of FR light, resulting in an increasing FR fraction. Biomass production and most of the morphological parameters were affected from 15 days after transplanting (DAT), while stomatal conductance from 22 DAT. Leaf greenness and specific leaf area values were influenced by the FR radiation starting from 8 DAT. At 29 DAT, substitution of an amount of R and B photons equal to 30 (RB3–30) or 50 (RB3–50) µmol m−2 s−1 with the same amount of FR radiation resulted in increased leaf biomass in both fresh (+49 and +47%, respectively) and dry weight (+45 and +42%, respectively). With RB3–30, the increase was due to leaf area expansion (+103%), whereas stomatal conductance (gs) and quantum efficiency of photosystem II (ΦPSII) did not change compared with the spectrum with only R and B. With RB3–50, gs and ΦPSII decreased compared with RB3 (-27 and -6%, respectively), but the greater biomass accumulation was supported by the greater leaf expansion (+119 %). The adoption of RB3–30 and RB3–50 also promoted light use efficiency (+45 and +42 %, respectively), lighting energy use efficiency (+48 and +53 %, respectively) and therefore the overall energy performance of the system. The adoption of RB3–30 and RB3–50 is a valid strategy to increase yield for lettuce production, but further studies, also in relation to blue radiation intensity, are needed to avoid the negative effect on leaf pigmentation.

Paradise by the far-red light: Far-red and red:blue ratios independently affect yield, pigments, and carbohydrate production in lettuce, Lactuca sativa.

In controlled environment agriculture, customized light treatments using light-emitting diodes are crucial to improving crop yield and quality. Red (R; 600-700 nm) and blue light (B; 400-500 nm) are two major parts of photosynthetically active radiation (PAR), often preferred in crop production. Far-red radiation (FR; 700-800 nm), although not part of PAR, can also affect photosynthesis and can have profound effects on a range of morphological and physiological processes. However, interactions between different red and blue light ratios (R:B) and FR on promoting yield and nutritionally relevant compounds in crops remain unknown. Here, lettuce was grown at 200 µmol m-2 s-1 PAR under three different R:B ratios: R:B87.5:12.5 (12.5% blue), R:B75:25 (25% blue), and R:B60:40 (40% blue) without FR. Each treatment was also performed with supplementary FR (50 µmol m-2 s-1; R:B87.5:12.5+FR, R:B75:25+FR, and R:B60:40+FR). White light with and without FR (W and W+FR) were used as control treatments comprising of 72.5% red, 19% green, and 8.5% blue light. Increasing the R:B ratio from R:B87.5:12.5 to R:B60:40, there was a decrease in fresh weight (20%) and carbohydrate concentration (48% reduction in both sugars and starch), whereas pigment concentrations (anthocyanins, chlorophyll, and carotenoids), phenolic compounds, and various minerals all increased. These results contrasted the effects of FR supplementation in the growth spectra; when supplementing FR to different R:B backgrounds, we found a significant increase in plant fresh weight, dry weight, total soluble sugars, and starch. Additionally, FR decreased concentrations of anthocyanins, phenolic compounds, and various minerals. Although blue light and FR effects appear to directly contrast, blue and FR light did not have interactive effects together when considering plant growth, morphology, and nutritional content. Therefore, the individual benefits of increased blue light fraction and supplementary FR radiation can be combined and used cooperatively to produce crops of desired quality: adding FR increases growth and carbohydrate concentration while increasing the blue fraction increases nutritional value.

Highly‐Efficiency Far‐Red Emission in Cr3+ Activated Ca1.8Mg1.2Al2Ge3O12 toward Plant Precise Lighting

AbstractFar‐red (FR) region (beyond 700 nm) lighting sources possess special potential for plant lighting. However, it remains a challenge to obtain high‐performance Cr3+‐doped FR phosphors. This study developed a FR phosphor, Ca1.8Mg1.2Al2Ge3O12:Cr3+ (CMAGG: Cr3+), using the cation substitution strategy. Under 438 nm blue light excitation, the phosphors display FR emission centered at 720 nm with a full width at half maximum (FWHM) of 91 nm. Benefit from the favorable match with the FR phytochrome (Pfr), the phosphor is combined with InGaN blue light chips to create a FR phosphor‐converted light‐emitting diode (pc‐LED), which is used in Italian lettuce growth experiments and it results shown in a 15% increase in fresh weight and a 6.5% increase in dry weight. Notably, supplemental FR light modulated its growth morphology. The results of this study will be useful for further research on novel Cr3+‐doped FR phosphors to meet the precise spectral requirements for plant growth.

Modulation of starch synthesis in Arabidopsis via phytochrome B-mediated light signal transduction.

Starch is a major storage carbohydrate in plants and is critical in crop yield and quality. Starch synthesis is intricately regulated by internal metabolic processes and external environmental cues; however, the precise molecular mechanisms governing this process remain largely unknown. In this study, we revealed that high red to far-red (high R:FR) light significantly induces the synthesis of leaf starch and the expression of synthesis-related genes, whereas low R:FR light suppress these processes. Arabidopsis phytochrome B (phyB), the primary R and FR photoreceptor, was identified as a critical positive regulator in this process. Downstream of phyB, basic leucine zipper transcription factor ELONGATED HYPOCOTYL5 (HY5) was found to enhance starch synthesis, whereas the basic helix-loop-helix transcription factors PHYTOCHROME INTERACTING FACTORs (PIF3, PIF4, and PIF5) inhibit starch synthesis in Arabidopsis leaves. Notably, HY5 and PIFs directly compete for binding to a shared G-box cis-element in the promoter region of genes encoding starch synthases GBSS, SS3, and SS4, which leads to antagonistic regulation of their expression and, consequently, starch synthesis. Our findings highlight the vital role of phyB in enhancing starch synthesis by stabilizing HY5 and facilitating PIFs degradation under high R:FR light conditions. Conversely, under low R:FR light, PIFs predominantly inhibit starch synthesis. This study provides insight into the physiological and molecular functions of phyB and its downstream transcription factors HY5 and PIFs in starch synthesis regulation, shedding light on the regulatory mechanism by which plants synchronize dynamic light signals with metabolic cues to module starch synthesis.

Evaluation of the roles of brassinosteroid, gibberellin and auxin for tomato internode elongation in response to low red:far-red light.

In this study, we explore the interplay between the plant hormones gibberellins (GA), brassinosteroids (BR), and Indole-3-Acetic Acid (IAA) in their collective impact on plant shade avoidance elongation under varying light conditions. We focus particularly on low Red:Far-red (R:FR) light conditions achieved by supplementing the background light with FR. We characterized the tomato internode response to low R:FR and, with RNA-seq analysis, we were able to identify some of the potential regulatory hormonal pathways. Through a series of exogenous pharmacological modulations of GA, IAA, and BR, we demonstrate that GA and BR are sufficient but also necessary for inducing stem elongation under low R:FR light conditions. Intriguingly, while IAA alone shows limited effects, its combination with GA yields significant elongation, suggesting a nuanced hormonal balance. Furthermore, we unveil the complex interplay of these hormones under light with low R:FR, where the suppression of one hormone's effect can be compensated by the others. This study provides insights into the hormonal mechanisms governing plant adaptation to light, highlighting the intricate and adaptable nature of plant growth responses. Our findings have far-reaching implications for agricultural practices, offering potential strategies for optimizing plant growth and productivity in various lighting environments.

Far-red light and temperature interactively regulate plant growth and morphology of lettuce and basil

Both the spectral quality of light, particularly the ratio of red (R; 600–700 nm) to far-red light (FR; 700–800 nm), and temperature can regulate phytochrome activities, subsequently influencing plant growth and morphology. However, our understanding of how light quality and temperature interact to control phytochrome-mediated morphological responses is largely limited to hypocotyl elongation in Arabidopsis seedlings. In this study, we quantified the interactive effects between FR light and temperature on morphological traits of agronomic and horticultural significance in two crops with contrasting morphology and growth habits, lettuce (Lactuca sativa L.) ‘Rex’ and basil (Ocimum basilicum) ‘Genovese’. Plants were grown under blue (B), green (G), R, and FR LED light with three spectral treatments [B25G25R200 (0%FR), B25G25R175FR25 (10%FR), B25G25R150FR50 (20%FR); the subscript represents photon flux density in μmol m−2 s−1] and five temperature regimes [Day (℃)/Night (℃); 20/20, 24/24, 28/28, 20/28 (–DIF), 28/20 (+DIF); DIF represents differential day/night temperature]. Total photon flux density in each spectral treatment was 250 μmol m−2 s−1 (400–800 nm; 12-h photoperiod). As FR light percentage and temperature increased, leaf length and plant height increased in both species. However, the effects of FR light and temperature were interdependent. Specifically, the stimulative effects of FR light on extension growth generally diminished under warmer temperatures and in the –DIF treatment (20/28 ℃). Total leaf area increased with increasing FR percentage under 20/20 and 24/24 ℃ treatments in both lettuce and basil. However, under 28/28 ℃, increasing the FR percentage from 0% to 20% caused a decrease in lettuce leaf area while having no effect on basil leaf area. Similar to responses in total leaf area, dry biomass significantly increased with increasing FR percentage under cooler temperatures. Under warm temperature of 28/28 ℃, dry biomass decreased with increasing FR percentage in lettuce, whereas no significant difference was observed in basil. Due to the interaction between FR and temperature, phytochrome photoequilibrium (PPE) estimated from photoconversions alone was less predictive of plant morphology under varying temperature conditions. Those results indicate that light spectrum and temperature interactively regulate the activity of phytochromes, plant morphology, and subsequent plant growth in both lettuce and basil, and thus should be co-optimized in controlled environment crop production systems.

Low R:FR light ratio enhances calcium nitrate resistance and stomatal movement in tomato seedlings by regulating H2O2 accumulation

Secondary salinization is a major environmental factor that causes a stress response and growth inhibition in plants in protected agriculture. The positive effect of a low red to far-red light ratio (R:FR) in salt tolerance through antioxidant defense has been reported, while the underlying model remains obscure. In this study, we used physiological and genetic approaches to investigate the relationship between H2O2 signaling and low R:FR-induced salt tolerance and antioxidant capacity in tomato seedlings. This study found that low R:FR treatment with calcium nitrate stress (SL treatment) enhanced the growth of plants and increased the net photosynthetic rate 5 days after stress compared with a higher R:FR ratio and calcium nitrate stress (S treatment). With transcriptomic analysis of tomato leaves at 5 d, compared with CK, most of glutaredoxin genes and antioxidant enzymes were upregulated by S treatment, which were upregulated further by SL treatment. Compared to the S treatment, within 5 days, the H2O2 level was increased faster before 24 h and it was slowed down after 24 h by SL treatment, with less H2O2 accumulation at 5 d than that of S treatment. The enhancement of gene expression of RBOH genes were also shown at 24 h under SL. It was found that stomatal conductance followed the dynamic change of H2O2, with a rapid closure of stomata and decrease at 3 h and an increase after 9 h in SL treatment compared to S treatment, respectively. There was same trend of stomata opening degrees of tomato leaves observed by optical microscope. However, the inhibitor of H2O2 production (DPI pretreatment) weakened the positive effect of low R:FR on the regulation of stomatal movement. In addition, SL treatment increased the antioxidant enzyme activities and proline content and decreased the MDA content as compared to the S treatment, while the enhancement of ROS homeostasis was reduced by the DPI pretreatment. In conclusion, low R:FR improved redox homeostasis and stomatal status under calcium nitrate stress through H2O2 signaling, improving the adaptation of tomato seedlings to soil salinization stress.

Spectrum of low-intensity screw-in horticultural light-emitting diode lamps influences time to flower and finished quality of long-day ornamental species

Bedding plants with a long-day (LD) flowering requirement constitute a substantial portion of annuals and perennials produced in the United States for spring sales. However, greenhouse production often occurs when the day length is naturally short and not conducive for flower induction of LD plants (LDPs). Thus, growers must create artificial LDs through day-extension, cyclic, or night-interruption (NI) lighting to promote flowering of LDPs. Many low-intensity, screw-in horticultural light-emitting diode (LED) lamps are now commercially available, though their emission spectra vary. Therefore, the objective of our study was to quantify the influence of various commercially available low-intensity screw-in horticultural LED lamps on the flowering and growth responses of LDPs. We grew several obligate and facultative LD annuals under either a 9-h truncated short-day (SD), or a 9-h SD with NI lighting from 2200 to 0200 hr each day. NI treatments consisted of Feit 9-W Non-Dimmable Plant Grow Lights (Feit), General Electric (GE) 10-W Arize™ Greenhouse Pro-Photoperiodic LED Lamps (GE), Philips 13-W GreenPower LED flowering lamp 2.0 s (Philips), or TotalGrow ™ 16-W Pure Flowering 200 Lamps (TotalGrow). Philips and GE lamps hastened flowering of all LDPs studied, while TotalGrow lamps promoted or hastened flowering on a genus-specific basis. Flowering was delayed by up to 11 d under Feit lamps and plants developed more nodes and inflorescences at open flower than the other lighting treatments. Generally, the height of plants within genera were similar regardless of the lighting treatment. However, plants grown under TotalGrow lamps had a larger stem length than those grown under the other lighting treatments as they emitted the highest percentage of FR light. Therefore, greenhouse growers should not base their decision solely on the price of lamps.

Far-Red Light Mediated Carbohydrate Concentration Changes in Leaves of Sweet Basil, a Stachyose Translocating Plant.

Photosynthetic active radiation (PAR) refers to photons between 400 and 700 nm. These photons drive photosynthesis, providing carbohydrates for plant metabolism and development. Far-red radiation (FR, 701-750 nm) is excluded in this definition because no FR is absorbed by the plant photosynthetic pigments. However, including FR in the light spectrum provides substantial benefits for biomass production and resource-use efficiency. We investigated the effects of continuous FR addition and end-of-day additional FR to a broad white light spectrum (BW) on carbohydrate concentrations in the top and bottom leaves of sweet basil (Ocimum basilicum L.), a species that produces the raffinose family oligosaccharides raffinose and stachyose and preferentially uses the latter as transport sugar. Glucose, fructose, sucrose, raffinose, and starch concentrations increased significantly in top and bottom leaves with the addition of FR light. The increased carbohydrate pools under FR light treatments are associated with more efficient stachyose production and potentially improved phloem loading through increased sucrose homeostasis in intermediary cells. The combination of a high biomass yield, increased resource-use efficiency, and increased carbohydrate concentration in leaves in response to the addition of FR light offers opportunities for commercial plant production in controlled growth environments.

Photoreceptors Modulate the Flowering and Morphogenesis Responses of Pelargonium × hortorum to Night-Interruption Light Quality Shifting

This study examines how the day neutral plant (DNP) Pelargonium × hortorum L.H. Bailey ‘Ringo 2000 Violet’ is impacted by LED night-interruption light (NIL) quality shifting in terms of flowering, morphogenesis, and transcription of photoreceptor genes. A closed-type plant factory with white (W) LEDs providing 180 μmol·m−2·s−1 PPFD light for long day (LD, 16 h light, 8 h dark), short day (SD, 10 h light, 14 h dark), or SD with 4 h night interruption (NI) with 10 μmol·m−2·s−1 PPFD LEDs was used to grow the plants. Two NIL qualities were employed, where after the first two hours, the NIL quality was switched from one to another among white (W), far-red (Fr), red (R), and blue (B). A total of 12 SD treatments with NIL quality shifting were used, with the LD and SD serving as the control: NI-BR (from B to R), NI-RB (from R to B), NI-RFr (from R to Fr), NI-FrR (from Fr to R), NI-BFr (from B to Fr), NI-FrB (from Fr to B), NI-WB (from W to B), NI-BW (from B to W), NI-FrW (from Fr to W), NI-WFr (from W to Fr), NI-RW (from R to W), and NI-WR (from W to R). LD refers to a 16 h long-day treatment. Geranium plants were taller in NI treatments that included Fr light than those in other NI treatments and were the shortest in the NI-WB treatment. Flowering was seen in all treatments and was notably encouraged by NI with Fr light, regardless of the sequence of light quality applied. In NI-FrR and NI-RFr, high expressions of phyA, phyB, and cry1 were observed. Flower formation and plant morphogenesis were both impacted by the photoperiod. Both morphogenesis and flowering were strongly impacted by the second NIL, but the first NIL had no effects on either. These findings indicate that NI-RFr and NI-FrR improve flowering, which may be used for commercial DNP production.

FAR-RED INSENSITIVE 219 and phytochrome B corepress shade avoidance via modulating nuclear speckle formation.

Plants can sense the shade from neighboring plants by detecting a reduction of the red:far-red light (R:FR) ratio. Phytochrome B (phyB) is the primary photoreceptor that perceives shade light and regulates jasmonic acid (JA) signaling. However, the molecular mechanisms underlying phyB and JA signaling integration in shade responses remain largely unknown. Here, we show the interaction of phyB and FAR-RED INSENSITIVE 219 (FIN219)/JASMONATE RESISTANT1 (JAR1) in a functional demand manner in Arabidopsis (Arabidopsis thaliana) seedling development. Genetic evidence and interaction studies indicated that phyB and FIN219 synergistically and negatively regulate shade-induced hypocotyl elongation. Moreover, phyB interacted with various isoforms of FIN219 under high and low R:FR light. Methyl jasmonate (MeJA) treatment, FIN219 mutation, and PHYBOE digalactosyldiacylglycerol synthase1-1 (dgd1-1) plants, which show increased levels of JA, altered the patterns of phyB-associated nuclear speckles under the same conditions. Surprisingly, PHYBOE dgd1-1 showed a shorter hypocotyl phenotype than its parental mutants under shade conditions. Microarray assays using PHYBOE and PHYBOE fin219-2 indicated that PHYB overexpression substantially affects defense response-related genes under shade light and coregulates expression of auxin-responsive genes with FIN219. Thus, our findings reveal that phyB substantially crosstalks with JA signaling through FIN219 to modulate seedling development under shade light.

Day-extension Blue Light Inhibits Flowering of Chrysanthemum When the Short Main Photoperiod Includes Far-red Light

Chrysanthemum (Chrysanthemum ×morifolium) is a common ornamental crop with a qualitative short-day flowering response. Extending a short day with moderate blue [B (400–500 nm)] light inhibits flowering in greenhouse conditions with sunlight but does not indoors (without sunlight) under B + red [R (600–700 nm)] light or white light. We postulated that the contrasting responses to B light as a day extension depended on far-red [FR (700–800 nm)] light during the day, which is plentiful under sunlight but lacking indoors under B+R or white light-emitting diodes. To study this response in three chrysanthemum cultivars, we delivered indoor lighting treatments at two locations with an 11-hour main photoperiod of B, green [G (500–600 nm)], R, and FR light, where subscript values indicate the photon flux density (in µmol·m−2·s−1) of each waveband: B60R120, B60G60R60, and B60R60FR60. After each short main photoperiod, plants received 0 or 4 hours of day-extension lighting of 60 µmol·m−2·s−1 of B light (B60). Under all treatments except B60R60FR60 with day-extension B60, it took ‘Chelsey Pink’, ‘Gigi Gold’, and ‘Gigi Yellow’ 13 to 17 days to reach the first visible inflorescence and 42 to 51 days to the first open flower. In contrast, plants grown under B60R60FR60 with day-extension B60 took 41 to 67 days to reach the first visible inflorescence with few plants developing open flowers. Plants were tallest at the first open flower and after 9 weeks of treatments when grown under B60R60FR60 with day-extension B60. These results indicate that the inclusion of FR light, but not G light, in the main photoperiod is necessary for day-extension B light to inhibit flowering in chrysanthemum. On the basis of these results and those of other studies, we postulate that the spectral dependence of flowering in chrysanthemum depends on whether and how the phytochrome photoequilibrium changes during the day. In particular, a sufficiently high daytime phytochrome photoequilibrium (e.g., under B+R and B+G+R light) could establish a predominant mode of floral signaling that prevents perception of subsequent B light as a long day.

Spectral-conversion film potential for greenhouses: Utility of green-to-red photons conversion and far-red filtration for plant growth.

Although green (G, 500 to 600 nm) and far-red (FR, 700 to 800 nm) light play important roles in regulating plant growth and development, they are often considered less useful at stimulating photosynthesis than red (R, 600 to 700 nm) and blue (B, 400 to 500 nm) light. Based on this perception, approaches to modifying the transmission of greenhouse glazing materials include (1) conversion of G photons from sunlight into R photons and (2) exclusion of the near-infrared (>700 nm) fraction of sunlight. We evaluated these approaches using simulated scenarios with light-emitting diodes to determine how partial and complete substitution of G with R light and exclusion of FR light affected the growth of lettuce and tomato grown indoors. The substitution of G with R light had little or no effect on fresh and dry mass of tomato. However, with the presence of FR light, fresh and dry mass of lettuce increased by 22-26% as G light was increasingly substituted with R light. In tomato, excluding FR inhibited plant height, leaf area, and dry mass by 60-71%, 10-37%, and 20-44%, respectively. Similarly, in lettuce, excluding FR inhibited plant diameter, leaf length, and dry mass by 15-23%, 23-33%, or 28-48%, respectively. We conclude that the spectral conversion of G-to-R photons can promote plant growth in at least some crop species, such as lettuce, while the exclusion of FR decreases crop growth and yield.

Metabolic Integration of Spectral and Chemical Cues Mediating Plant Responses to Competitors and Herbivores.

Light quality and chemicals in a plant’s environment can provide crucial information about the presence and nature of antagonists, such as competitors and herbivores. Here, we evaluate the roles of three sources of information—shifts in the red:far red (R:FR) ratio of light reflected off of potentially competing neighbors, induced metabolic changes to damage by insect herbivores, and induced changes to volatile organic compounds emitted from herbivore-damaged neighboring plants—to affect metabolic responses in the tall goldenrod, Solidago altissima. We address the hypothesis that plants integrate the information available about competitors and herbivory to optimize metabolic responses to interacting stressors by exposing plants to the different types of environmental information in isolation and combination. We found strong interactions between the exposure to decreased R:FR light ratios and damage on the induction of secondary metabolites (volatile and non-volatile) in plants. Similarly, the perception of VOCs emitted from neighboring plants was altered by the simultaneous exposure to spectral cues from neighbors. These results suggest that plants integrate spectral and chemical environmental cues to change the production and perception of volatile and non-volatile compounds and highlight the role of plant context-dependent metabolic responses in mediating population and community dynamics.

Effects of Light Quality on Colonization of Tomato Roots by AMF and Implications for Growth and Defense.

Beneficial soil microbes can enhance plant growth and defense, but the extent to which this occurs depends on the availability of resources, such as water and nutrients. However, relatively little is known about the role of light quality, which is altered during shading, resulting a low red: far-red ratio (R:FR) of light. We examined how low R:FR light influences arbuscular mycorrhizal fungus (AMF)-mediated changes in plant growth and defense using Solanum lycopersicum (tomato) and the insect herbivore Chrysodeixis chalcites. We also examined effects on third trophic level interactions with the parasitoid Cotesia marginiventris. Under low R:FR light, non-mycorrhizal plants activated the shade avoidance syndrome (SAS), resulting in enhanced biomass production. However, mycorrhizal inoculation decreased stem elongation in shaded plants, thus counteracting the plant’s SAS response to shading. Unexpectedly, activation of SAS under low R:FR light did not increase plant susceptibility to the herbivore in either non-mycorrhizal or mycorrhizal plants. AMF did not significantly affect survival or growth of caterpillars and parasitoids but suppressed herbivore-induced expression of jasmonic acid-signaled defenses genes under low R:FR light. These results highlight the context-dependency of AMF effects on plant growth and defense and the potentially adverse effects of AMF under shading.