Elisabeth Tournier-Lasserve is professor of genetics at Faculte de Medecine Lariboisiere-St Louis, and director of INSERM Unit EPI99-21, where she researches the genetics of vascular disorders and the genetics of autoimmune disorders. Molecular genetics' impressive progress over the past 20 years was made possible by the discovery of DNA's structure, the ability to have direct access to genetics thanks to the development of cloning, sequencing, and PCR amplification as well as the ability to map and identify disease genes because of the development of microsatellite polymorphic markers and yeast artificial chromosomes. Medical genetics, formerly a paediatric discipline, now pervades all medical specialties. The genes involved in several hundreds of monogenic disorders have been localised or identified. This discovery allows a better understanding of the underlying mechanisms, and it ushers in new developments in biology. Clinical observations such as anticipation phenomena, seen in several neurological diseases, Steinert's disease, Huntington's chorea, and some ataxias, have been correlated to abnormal expansion of nucleotide triplets. The mystery of clinical phenotypical differences in Prader-Willi and Angelman's syndrome–depending on whether the condition is transmitted by the father or by the mother–has been elucidated. And the concept of parental imprinting has been extended to many other disorders. New nosological frameworks have appeared. Identification of the role of ion channels in many diseases– generally sharing paroxysmal characteristics (eg, long QT syndrome, hyper- or hypokalaemic paralysis, hemiplegic migraine)–led to the concept of ‘channelopathy’, a steadily expanding field. The 1990s witnessed the expansion of the field of DNA-repair disorders, coinciding with the identification of the genes of ataxia telangiectasia, Bloom's syndrome, and various forms of xeroderma pigmentosum. This to and fro between clinical medicine and molecular biology is not limited to the definition of nosological frameworks. Molecular genetics' applications to the diagnosis of hereditary diseases are plentiful, both in prenatal diagnosis of severe early-onset disorders and in presymptomatic ("positive”) diagnosis of adult-onset hereditary diseases. Molecular tools–valuable for genetic counselling–can also help in the positive diagnosis of disease in adults, and also help to identify the clinical and prognostic variants of a disease, according to the molecular abnormality involved. Advances in predictive medicine are not devoid of ethical repercussions. Care of patients, couples, or family members is multidisciplinary, and involves geneticists and other clinicians, and in some cases psychologists. The momentum of this particular aspect of care and the speed at which findings evolve requires the setting up of centres that are specialised in some groups of diseases. Progress during the past 20 years and the fascinating aspects of new research domains should not lead us to forget at least two challenges for the next 10 years: the identification of genes involved in multifactorial polygenic diseases, and the development of therapies. Identification of genetic variants in the determination of cardiovascular diseases, of autoimmune diseases, and of asthma remains a challenge because the methods used lack power, because of the heterogeneity of these disorders, and because of the very large number of patients who have to be analysed. International collaborations and close commitment of many clinicians should allow recruitment of the very large cohorts needed for this unavoidable step during the next 5 years. However, financial means must be made available to the teams. The greatest challenge concerns the development of therapy. Between 1980 and 2000, genes of many disorders have been identified and diagnostic tests developed. However, patients expect effective treatments. Hopes for gene transfer have led to nearly 400 gene-therapy trials (eg, for cystic fibrosis, immune deficiencies, or cardiovascular diseases). Studies have improved the vectors used for transfer, g- but generally, effects do not yet meet expectations. In most cases, either the ? correction was not enough to reverse clinical abnormalities, or was limited by rapid extinction of the transgene expression. However, the clinically spectacular effects recently observed in patients with severe lower limb arterial disease after intramuscular administration of a plasmid containing the VEGF gene clearly show that this avenue must be pursued. Perhaps the method will be applied successfully outside the domain of monogenic disorders. The therapeutic approach to these disorders may soon no longer be restricted to gene therapy but may harness conventional pharmacology, as was recently suggested in Friedreich's ataxia. Formerly limited to the diagnosis of rare diseases by means of dysmorphic features, genetics of the second millennium now invades all specialties. This has allowed unprecedented accumulation of knowledge about diseases. Pursuing these interactions, and their extension to pharmaceutical industry and bio-technological firms, is undoubtedly the ground from which treatments shall rise.