FLuorescence EXplorer Mission Research Articles

OLCI-A/B tandem phase: evaluation of FLuorescence EXplorer (FLEX)-like radiances and estimation of systematic differences between OLCI-A and OLCI-FLEX

Abstract. During the tandem phase of Sentinel-3A and Sentinel-3B in summer 2018 the Ocean and Land Colour Imager (OLCI) mounted on the Sentinel-3B satellite was reprogrammed to mimics ESA's eighth Earth Explorer, the FLuorescence EXplorer (FLEX). The OLCI in FLEX configuration (OLCI-FLEX) had 45 spectral bands between 500 and 792 nm. The new data set with high-spectral-resolution measurements (bandwidth: 1.7–3.7 nm) serves as preparation for the FLEX mission. Spatially co-registered measurements of both instruments are used for the atmospheric correction and the retrieval of surface parameters, e.g. the fluorescence or the leaf area index. For such combined products, it is essential that both instruments are radiometrically consistent. We developed a transfer function to compare radiance measurements from different optical sensors and to monitor their consistency. In the presented study, the transfer function shifts information gained from high-resolution “FLEX-mode” settings to information convolved with the spectral response of the normal (lower) spectral resolution of the OLCI sensor. The resulting reconstructed low-resolution radiance is representative of the high-resolution data (OLCI-FLEX), and it can be compared with the measured low-resolution radiance (OLCI-A measurements). This difference is used to quantify systematic differences between the instruments. Applying the transfer function, we could show that OLCI-A is about 2 % brighter than OLCI-FLEX for most bands of the OLCI-FLEX spectral domain. At the longer wavelengths (> 770 nm) OLCI-A is about 5 % darker. Sensitivity studies showed that the parameters affecting the quality of the comparison of OLCI-A and OLCI-FLEX with the transfer function are mainly the surface reflectance and secondarily the aerosol composition. However, the aerosol composition can be simplified as long as it is treated consistently in all steps in the transfer function. Generally, the transfer function enables direct comparison of instruments with different spectral responses even with different observation geometries or different levels of observation. The method is sensitive to measurement biases and errors resulting from the processing. One application could be the quality control of the FLEX mission; presently it is also useful for the quality control of the OLCI-FLEX data.

Evaluation of the Spatial Representativeness of In Situ SIF Observations for the Validation of Medium-Resolution Satellite SIF Products

The upcoming Fluorescence Explorer (FLEX) mission will provide sun-induced fluorescence (SIF) products at unprecedented spatial resolution. Thus, accurate calibration and validation (cal/val) of these products are key to guarantee robust SIF estimates for the assessment and quantification of photosynthetic processes. In this study, we address one specific component of the uncertainty budget related to SIF retrieval: the spatial representativeness of in situ SIF observations compared to medium-resolution SIF products (e.g., 300 m pixel size). Here, we propose an approach to evaluate an optimal sampling strategy to characterise the spatial representativeness of in situ SIF observations based on high-spatial-resolution SIF data. This approach was applied for demonstration purposes to two agricultural areas that have been extensively characterized with a HyPlant airborne imaging spectrometer in recent years. First, we determined the spatial representativeness of an increasing number of sampling points with respect to a reference area (either monocultural crop fields or hypothetical FLEX pixels characterised by different land cover types). Then, we compared different sampling approaches to determine which strategy provided the most representative reference data for a given area. Results show that between 3 and 13.5 sampling points are needed to characterise the average SIF value of both monocultural fields and hypothetical FLEX pixels of the agricultural areas considered in this study. The number of sampling points tends to increase with the standard deviation of SIF of the reference area, as well as with the number of land cover classes in a FLEX pixel, even if the increase is not always statistically significant. This study contributes to guiding cal/val activities for the upcoming FLEX mission, providing useful insights for the selection of the validation site network and particularly for the definition of the best sampling scheme for each site.

Towards consistent assessments of in situ radiometric measurements for the validation of fluorescence satellite missions

The upcoming Fluorescence Explorer (FLEX) satellite mission aims to provide high quality radiometric measurements for subsequent retrieval of sun-induced chlorophyll fluorescence (SIF). The combination of SIF with other observations stemming from the FLEX/Sentinel-3 tandem mission holds the potential to assess complex ecosystem processes. The calibration and validation (cal/val) of these radiometric measurements and derived products are central but challenging components of the mission. This contribution outlines strategies for the assessment of in situ radiometric measurements and retrieved SIF. We demonstrate how in situ spectrometer measurements can be analysed in terms of radiometric, spectral and spatial uncertainties. The analysis of more than 200 k spectra yields an average bias between two radiometric measurements by two individual spectrometers of 8%, with a larger variability in measurements of downwelling radiance (25%) compared to upwelling radiance (6%). Spectral shifts in the spectrometer relevant for SIF retrievals are consistently below 1 spectral pixel (up to 0.75). Found spectral shifts appear to be mostly dependent on temperature (as measured by a temperature probe in the instrument). Retrieved SIF shows a low variability of 1.8% compared with a noise reduced SIF estimate based on APAR. A combination of airborne imaging and in situ non-imaging fluorescence spectroscopy highlights the importance of a homogenous sampling surface and holds the potential to further uncover SIF retrieval issues as here shown for early evening acquisitions. Our experiments clearly indicate the need for careful site selection, measurement protocols, as well as the need for harmonized processing. This work thus contributes to guiding cal/val activities for the upcoming FLEX mission.

Multitemporal Mosaicing for Sentinel-3/FLEX Derived Level-2 Product Composites

The increasing availability of remote sensing data raises important challenges in terms of operational data provision and spatial coverage for conducting global studies and analyses. In this regard, existing multitemporal mosaicing techniques are generally limited to producing spectral image composites without considering the particular features of higher-level biophysical and other derived products, such as those provided by the Sentinel-3 (S3) and Fluorescence Explorer (FLEX) tandem missions. To relieve these limitations, this article proposes a novel multitemporal mosaicing algorithm specially designed for operational S3-derived products and also studies its applicability within the FLEX mission context. Specifically, we design a new operational methodology to automatically produce multitemporal mosaics from derived S3/FLEX products with the objective of facilitating the automatic processing of high-level data products, where weekly, monthly, seasonal, or annual biophysical mosaics can be generated by means of four processes proposed in this work: 1) operational data acquisition; 2) spatial mosaicing and rearrangement; 3) temporal compositing; and 4) confidence measures. The experimental part of the work tests the consistency of the proposed framework over different S3 product collections while showing its advantages with respect to other standard mosaicing alternatives. The source codes of this work will be made available for reproducible research.

Instrument predevelopment activities for FLEX mission

The fluorescence imaging spectrometer (FLORIS) is the payload of the fluorescence explorer mission (FLEX) of the European Space Agency. The mission objective is to perform quantitative measurements of the solar-induced vegetation fluorescence aiming at monitoring photosynthetic activity. FLORIS works in a push-broom configuration, and it is designed to acquire data in the 500 to 780 nm spectral range with a sampling of 0.1 nm in the oxygen bands (759 to 769 nm and 686 to 697 nm) and 0.5 to 2.0 nm in the red edge, chlorophyll absorption, and photochemical reflectance index bands. FLEX will fly in formation with Sentinel-3 to benefit from the measurements made by Sentinel-3 instruments, OLCI, and SLSTR, particularly concerning the cloud screening, the proper characterization of the atmospheric state, and the determination of the surface temperature. The instrument concept is based on a common telescope and two modified Offner spectrometers with reflective concave gratings both for the high resolution (HR) and low resolution (LR) spectrometers. In the frame of the instrument predevelopment, Leonardo Company (Italy) has built and tested an elegant breadboard of the instrument consisting of the telescope and the HR spectrometer. OHB System AG (Germany) is in charge of the development of the LR spectrometer. The main objectives of the activity are to anticipate the development of the instrument and provide early risk retirement of the critical components; evaluate the system performances such as imaging quality parameters, straylight, ghost, polarization sensitivity, and environmental influences; verify the adequacy of critical tests such as spectral characterization and straylight; and define and optimize instrument alignment procedures. Following a brief overview of the FLEX mission, we will cover the design and the development of the optics breadboard with emphasis on the results obtained during the tests and the lessons learned for the flight unit.

Reconstruction of the full spectrum of solar-induced chlorophyll fluorescence: Intercomparison study for a novel method

Solar-Induced chlorophyll Fluorescence (SIF) can serve as an early and non-invasive indicator of the functioning and status of vegetation due to its close link to photosynthetic activity. Most existing approaches retrieve SIF at around few discrete absorption lines. However, the full SIF spectrum can provide more information on the functional status of photosynthetic machinery. European Space Agency's FLuorescence EXplorer (FLEX) mission, to be launched in 2022, is dedicated to the accurate reconstruction of the full SIF spectrum over land and incorporates the heights and positions of the two SIF peaks and the total fluorescence emission (spectrally-integrated value) into planned Level-2 products.In this paper, an advanced Fluorescence Spectrum Reconstruction (aFSR) method was proposed to reconstruct the full SIF spectrum by capitalizing on the features of existing methods. The aFSR method used linear combinations of basis spectra to approximate the spectra of SIF and the reflectance factor and exploited all available bands within the spectral range of SIF emission for spectral fitting of SIF and reflected radiance. The number of basis spectra of the reflectance factor used was self-adaptively determined based on the Bayesian information criterion. A comprehensive intercomparison between the aFSR method and three other methods (i.e., the Fluorescence Spectrum Reconstruction method, the Full-spectrum Spectral Fitting Method, and the SpecFit method) was performed using simulated and experimental datasets. For simulated datasets, the impact of spectral resolution (SR), signal-to-noise ratio (SNR), atmospheric correction, canopy structure, leaf biochemical parameters and directional effect on the accuracy of SIF spectrum reconstruction was considered. Results show that while all methods could achieve the accuracy standard set by the FLEX mission (average absolute relative error of spectrally-integrated SIF <10%) when spectral resolving power and SNR were high (e.g., SR ≤ 0.3 nm and SNR ≥ 700), aFSR generally provided the highest reconstruction accuracy. For the first time we investigated the performance of the SIF spectrum reconstruction on 3-D radiative transfer (RT) simulations and compared with that on typical 1-D simulations. The increase of canopy heterogeneity from 1-D to 3-D did not noticeably deteriorate the accuracy of aFSR, implying that aFSR was applicable to different canopy structures. The aFSR method was also more robust than other methods as it was less affected by atmospheric correction and directional effect. For the experimental dataset, the SIF spectra reconstructed by aFSR agreed well with literature in terms of shape, magnitude and diurnal variation and were in agreement with the other methods: the coefficient of determination and the root-mean-square error between the reconstruction results of aFSR and the average of the SIF spectra reconstructed through three other methods were higher than 0.93 and lower than 0.09 W·m−2·sr−1·μm−1, respectively.

Design of a Generic 3-D Scene Generator for Passive Optical Missions and Its Implementation for the ESA’s FLEX/Sentinel-3 Tandem Mission

During the design phase of a satellite mission, end-to-end mission performance simulator (E2ES) tools allow scientists and engineers evaluating the mission concept, consolidating system technical requirements and analyzing the suitability of the implemented technical solutions and data processing algorithms. The generation of synthetic scenes is one of the core parts of an E2ES, providing scenes (ground truth) as would be observed by satellite instruments and used as reference against simulated retrieved mission products. An appropriate generation of the scene also allows assessing the performance of the ground data processing chain replacing real instrument data before the mission is in orbit, for which the fidelity of the scene generation is critical. This paper describes the design of a generic scene generator (GSG) with capabilities to generate complex 3-D synthetic scenes that combine the effects of surface, heterogeneity, topography and atmosphere, and viewing/illumination geometry. The proposed design allows generating consistent high spatial and spectral resolution top-of-atmosphere radiance scenes for multiple instruments based on the use of thematic maps, radiative transfer models, and reflectance databases. The described GSG was implemented within the FLuorescence EXplorer (FLEX) E2ES software tool and showed its capabilities to generate compatible scenes for the fluorescence imaging spectrometer, ocean and land color instrument, and sea and land surface temperature radiometer instruments of ESA’s FLEX/Sentinel-3 tandem mission and to validate the fulfillment of the FLEX mission requirements.

FLEX End-to-End Mission Performance Simulator

The FLuorescence EXplorer (FLEX) mission, selected as the European Space Agency's eighth Earth Explorer, aims to globally measure the sun-induced-chlorophyll-fluorescence spectral emission from terrestrial vegetation. In the frame of the FLEX mission, several industrial and scientific studies have analyzed the instrument design, image processing algorithms, or modeling aspects. At the same time, a common tool is needed to address the overall FLEX mission performance by combining all these features. For this reason, an end-to-end mission performance simulator has been developed for the FLEX mission (FLEX-E). This paper describes the FLEX-E software design, which combines the generation of complex synthetic scenes with an advanced modeling of the instrument behavior and the full processing scheme up to the final fluorescence product. The results derived from FLEX-E simulations indicate that the instrument and developed image processing algorithms are able to retrieve the sun-induced fluorescence with an accuracy below the 0.2 $\text{mW}\cdot\text{m}^{-2}\cdot\text{sr}^{-1}\cdot \text{nm}^{-1}$ mission requirement. It is expected that FLEX-E will not only optimize the FLEX retrieval algorithms and technical requirements, but also serve as the baseline for the ground processing implementation and testing of calibration/validation procedures.

Misión FLEX (Fluorescence Explorer): Observación de la fluorescencia por teledetección como nueva técnica de estudio del estado de la vegetación terrestre a escala global

FLEX (Fluorescence EXplorer) is a candidate for the 8th ESA’s Earth Explorer mission. Is the first space mission specifically designed for the estimation of vegetation fluorescence on a global scale. The mission is proposed to fly in tandem with the future ESA´s Sentinel-3 satellite. It is foreseen that the information obtained by Sentinel-3 will be supplemented with that provided by FLORIS (Fluorescence Imaging Spectrometer) onboard FLEX. FLORIS will measure the radiance between 500 and 800 nm with a bandwidth between 0.1 nm and 2 nm, providing images with a 150 km swath and 300 m pixel size. This information will allow a detailed monitoring of vegetation dynamics, by improving the methods for the estimation of classical biophysical parameters, and by introducing a new one: fluorescence. This paper presents the current status of FLEX mission in A/B1 phase and the different ongoing studies, campaigns and projects carried out in support of the FLEX mission.