Florida Reef Research Articles

Acclimation and size influence predation, growth, and survival of sexually produced Diploria labyrinthiformis used in restoration

Stony coral tissue loss disease (SCTLD) has swept through Florida reefs and caused mass mortality of numerous coral species. In the wake of these losses, efforts are underway to propagate coral species impacted by SCTLD and promote population recovery. However, numerous knowledge gaps must be addressed to effectively grow, outplant, and restore populations of the slower growing, massive species that were lost. Here, we used sexual recruits of Diploria labyrinthiformis spawned in captivity to understand how conditioning, coral size, and nutritional status at outplanting affect coral survivorship, growth, and susceptibility to predation. We found that ex situ conditioning with supplemental feeding increased coral growth rates, resulting in larger sized corals at the time of outplanting. In turn, these corals had higher growth rates in the field and a lower probability of being removed by predators than outplants that were conditioned in in situ nurseries. Additionally, we found that coral size was an important predictor of survivorship, suggesting that hastening the speed at which young corals grow and outplanting larger juveniles can improve restoration outcomes. Taken together, our results suggest that providing supplemental food to corals at ex situ facilities confers benefits that could help restore populations of massive coral species impacted by SCTLD.

Boater’s Preference for Coral Reef Restoration and Sustainable Resource Management in Florida

The Florida Reef is under intense pressure from excessive human disturbance and climate change. A group of Florida residents including boaters and fishers was surveyed about their concerns and willingness to pay (WTP) for restorative services. A discrete choice valuation experiment was conducted, involving nearly 1,300 respondents, to estimate WTP for coral reef restoration, wide beaches, and clean water. The boaters demonstrated a somewhat higher WTP for a more extensive beach size and coral restoration. The analysis allowed quantification of maritime transportation passengers’ preferences for sustainable resource management. The findings provide useful insights for maritime transportation and coastal management agencies wishing to finance conservation initiatives. Furthermore, the study offers valuable methodological contributions and policy relevant information to incorporate ecosystem service valuations into the decision-making process beyond the study areas.

Impact of Hurricane Irma on coral reef sediment redistribution at Looe Key Reef, Florida, USA

Abstract. Understanding event-driven sediment transport in coral reef environments is essential to assessing impacts on reef species, habitats, restoration, and mitigation, yet a global knowledge gap remains due to limited quantitative studies. Hurricane Irma made landfall in the Lower Florida Keys with sustained 209 km h−1 winds and waves greater than 8 m on 10 September 2017, directly impacting the Florida Reef Tract (FRT) and providing an opportunity to perform a unique comprehensive, quantitative assessment of its impact on coral reef structure and sediment redistribution. We used lidar and multibeam derived digital elevation models (DEMs) collected before and after the passing of Hurricane Irma over a 15.98 km2 area along the lower FRT including Looe Key Reef to quantify changes in seafloor elevation, volume, and structure due to storm impacts. Elevation change was calculated at over 4 million point locations across 10 habitat types within this study area for two time periods using data collected (1) approximately 1 year before the passing of Irma and 3 to 6 months following the storm's impact as well as (2) 3 to 6 months after and up to 16.5 months after the storm. Elevation change data were then used to generate triangulated irregular network (TIN) models in ArcMap to calculate changes in seafloor volume during each time period. Our results indicate that Hurricane Irma was primarily a depositional event that increased mean seafloor elevation and volume at this study site by 0.34 m and up to 5.4 Mm3, respectively. Sediment was transported primarily west-southwest (WSW) and downslope, modifying geomorphic seafloor features including the migration of sand waves and rubble fields, formation of scour marks in shallow seagrass habitats, and burial of seagrass and coral-dominated habitats. Approximately 16.5 months after Hurricane Irma (during a 13-month period between 2017 and 2019), net erosion was observed across all habitats with mean elevation change of −0.15 m and net volume change up to −2.46 Mm3. Rates of elevation change during this post-storm period were 1 to 2 orders of magnitude greater than decadal and multi-decadal rates of change in the same location, and changes showed erosion of approximately 50 % of sediment deposited during the storm event as seafloor sediment distribution began to re-equilibrate to non-storm sea-state conditions. Our results suggest that higher-resolution elevation change data collected over seasonal and annual time periods could enhance characterization and understanding of short-term and long-term rates and processes of seafloor change.

Host density and anthropogenic stress are drivers of variability in dark spot disease in Siderastrea siderea across the Florida Reef Tract

Dark spot disease (DSD) was first reported within Florida's coral reefs in the 1990s but factors affecting its spatial distribution have not been well studied. We used a 14-yr (2005–2019) coral monitoring data set, utilizing 2242 surveys collected along Florida's coral reefs (about 530 linear km) to explore the spatial and temporal patterns of DSD occurrence. We built predictive statistical models to test for correlations between a suite of environmental and human impact factors and the occurrence of DSD in the reef coral, Siderastrea siderea. DSD in S. siderea is a chronic disease which occurred in all 14 yrs of the study. Annual DSD prevalence ranged from 0.45% to 4.4% and the proportion of survey sites that had DSD ranged from 4.8% to 30.9%. During the study period, DSD became more widespread across Florida's coral reefs and affected a higher proportion of S. siderea populations. Spatial variations in DSD correlated with environmental and human factors which together explained 64.4% of the underlying variability. The most influential factors were concentration of silica in the surface waters (a proxy for freshwater input), the total number of coral hosts, and distance to septic areas. DSD occurred in all regions, but the highest cumulative prevalence occurred in the upper Keys on reefs around major urban centers with links to coastal water discharges. Our results support the hypothesis that coastal water quality is a key component of DSD disease dynamics in Florida and provides motivation for addressing land–sea connections to ameliorate disease occurrence in the region.

Coral reefs and climate change: Examining two institutional approaches to managing a novel marine ecosystem

Much of Florida’s economy is tied to the third-largest barrier reef in the world, the Florida Reef Tract. However, because of anthropogenic threats, it is not the thriving ecosystem it once was, and its persistence requires new, unconventional management strategies. Two entities have emerged to address this problem: the Florida Keys National Marine Sanctuary, a formally structured regulatory authority, and the Southeast Florida Coral Reef Initiative, an informal network of stakeholder partnerships. We therefore ask: How does coral reef management vary over the different spatial extents and structures of these organizations, and how do these organizations vary in incorporating important aspects of novel ecosystem management? Using 1122 statements from news documents, public meeting transcripts, and stakeholder interviews, we compare the institutional elements of each organization and determine the importance they place on five management considerations. Our results indicate significant institutional differences between the two, one marked by a focus on regulations and authority and the other by a focus on data collection and preparedness. Understanding these institutional differences promotes a better understanding of how adaptive governance can be iteratively applied in novel ecosystems to improve management under rapidly changing conditions.

Modern coral range expansion off southeast Florida falls short of Late Holocene baseline

As thermal stress and disease outbreaks decimate coral reefs throughout the tropics, there is growing evidence that higher latitude marine environments may provide crucial refuges for many at-risk, temperature-sensitive coral species. However, our understanding of how coral populations expand into new areas and sustain themselves over time is constrained by the limited scope of modern observations. Here, we provide geological insights into coral range expansions by reconstructing the composition of a Late Holocene-aged subfossil coral death assemblage on the southeast Florida reef tract and comparing it to modern reefs throughout the region. Our findings show that the Late Holocene coral assemblages were dominated by now critically endangered Acropora species between ~3500 and 1800 years before present, mirroring classic zonation patterns characteristic of healthy pre-1970s Caribbean reefs. In contrast, the modern reefs off southeast Florida are becoming increasingly dominated by stress-tolerant species like Porites astreoides and Siderastrea siderea despite modest expansions of Acropora cervicornis over the past several decades. Our results suggest that ongoing anthropogenic stressors, not present during the Late Holocene, are likely limiting the ability of modern higher latitude reefs in Florida to function as long-term climate refugia.

Environmental predictors for the restoration of a critically endangered coral, Acropora palmata, along the Florida reef tract.

The population decline and lack of natural recovery of multiple coral species along the Florida reef tract have instigated the expanding application of coral restoration and conservation efforts. Few studies, however, have determined the optimal locations for the survival of outplanted coral colonies from restoration nurseries. This study predicts the optimal locations for Acropora palmata colonies along the Florida reef tract using a boosted-regression-tree model to examine the relationships between the occurrence of wild A. palmata and ten environmental variables. Our model results predicted A. palmata was most likely to occur in shallow reef habitats with (i) generally low mean chlorophyll-a concentrations (< 1 mg m-3), (ii) moderate fetch (3 kJ m-2), (iii) salinities between 20 and 37.5 ppt, (iv) temperatures between 20 and 32°C, (vi) low mean concentrations of total nitrogen (0.16 ppm), and (iv) irradiance between 26.5 and 53.5 mol m-2 s-1. The most suitable habitats for A. palmata were disproportionately allocated to reefs in Biscayne Bay, the Upper Keys, the western-lower Florida Keys, the Marquesas, and the Dry Tortugas. The middle Florida Keys had unfavorable environmental conditions for A. palmata habitat. Results from this study inform where A. palmata, outplanted as part of restoration and conservation efforts, would have suitable environmental conditions to persist over time. This study also provides decision-making support for management focused on the conservation and restoration of the endangered species A. palmata along the Florida reef tract.

The Effect of Pollen on Coral Health.

Corals are facing a range of threats, including rises in sea surface temperature and ocean acidification. Some now argue that keeping corals ex situ (in aquaria), may be not only important but necessary to prevent local extinction, for example in the Florida Reef Tract. Such collections or are already becoming common place, especially in the Caribbean, and may act as an ark, preserving and growing rare or endangered species in years to come. However, corals housed in aquaria face their own unique set of threats. For example, hobbyists (who have housed corals for decades) have noticed seasonal mortality is commonplace, incidentally following months of peak pollen production. So, could corals suffer from hay fever? If so, what does the future hold? In short, the answer to the first question is simple, and it is no, corals cannot suffer from hay fever, primarily because corals lack an adaptive immune system, which is necessary for the diagnosis of such an allergy. However, the threat from pollen could still be real. In this review, we explore how such seasonal mortality could play out. We explore increases in reactive oxygen species, the role of additional nutrients and how the microbiome of the pollen may introduce disease or cause dysbiosis in the holobiont.

Reef structure of the Florida Reef Tract for the period 2005–2020

Shallow-water coral reefs of the Florida Reef Tract compose the third largest reef in the world, but during the last several decades, scleractinian (stony) corals have suffered unprecedented declines from global and local stressors. A program to evaluate the effects of high-temperature bleaching events was initiated by The Nature Conservancy’s Florida Reef Resilience Program in 2005 and surveys have been completed across at least some portion of the entire region every year since. The program adopted a demographic (colony-based) assessment approach, which records colony species, size (height and maximum diameter), and estimated partial mortality (percent barren skeleton). Because reef structure is critical to ecosystem functioning and services, data from 2005 to 2020 were analyzed to describe the abundance, size, and morphological complexity of stony coral colonies forming the biogenic reef. Colony height, footprint, surface area, and volume summed for 6016 transects were used to describe reef structure and averages were used to characterize the components that contributed to the structure. Nearly 150,000 colonies representing 49 species were reported during this period and results demonstrated both spatial and temporal changes for the region and for geographic subregions. Some subregions showed increasing colony density, especially for three small, hemispheric species, and declining average colony size.

Factors influencing the biomass of large-bodied parrotfish species in the absence of fishing on coral reefs in Florida, USA.

Parrotfishes are a functionally critical component of Caribbean reef fish assemblages, with large-bodied parrotfish species exerting particularly important top-down control on macroalgae. Despite their importance, low biomasses of large-bodied parrotfishes on many reefs hamper our ability to study and understand their ecology. Florida reefs, where most parrotfish fishing has been illegal since 1992, present a unique opportunity to explore covariates of their distribution. Using boosted regression tree models and 23 covariates, this study identified the major predictors of four species of Atlantic large-bodied parrotfishes. Maximum hard substrate relief, the area of the surrounding reef, and the availability of seagrass habitat were each positively related to parrotfish presence. Strong positive relationships between parrotfish presence and biomass and the biomass of other parrotfishes on a reef suggest that all four species responded to a similar subset of environmental conditions. However, relationships between parrotfish presence and biomass and depth, habitat type, coral cover, and the proximity of a reef to deepwater habitats differed among species, highlighting distinct habitat preferences. These results can improve managers' ability to target important biophysical correlates of large-bodied parrotfishes with appropriate management interventions and identify areas for protection.

Satellite tracking reveals use of Biscayne National Park by sea turtles tagged in multiple locations

Although historical observations date back to the 1800’s, there is little information on sea turtle occupancy within Biscayne National Park (BNP). The park is located along the Florida reef tract and is dominated by the Gulfstream, which acts as a corridor for many marine animals. Here we used satellite telemetry to determine areas of use in BNP for two species of imperiled sea turtles, loggerhead (Caretta caretta) and green (Chelonia mydas) turtles. We included data for turtles tagged between 2009–2021 at sites both within park waters and in five locations outside the park boundary; individuals were captured both in the water and on land. We tagged 60 individuals (female, n = 48; male, n = 3; immature, n = 9); loggerheads (n = 33) ranged in size from 66.2 to 109.9 cm CCL (curved carapace length) and green turtles (n = 27) ranged in size from 39.1 to 111.9 cm CCL. We used behavioral switching state-space modeling (SSM) to obtain daily predicted positions for each turtle, classified turtle behavior within the park as either foraging, migration, or both foraging and migration, and summarized high-use areas for each species across all months of the year. Turtles used park waters year-round, with concentrated use of deeper waters during seasonal migrations. Across all 60 turtles, 21 spent their tracking time foraging within BNP boundaries and 30 used the park as part of their migratory pathway; five turtles used the park for both foraging and migration, and the remaining four had SSM points very close to the park. Loggerhead migration occurred from February through November, whereas green turtle migration was concentrated in August. Both turtle species exhibited high overlap (i.e., usage) with seagrass habitat. These findings are relevant as managers consider strategies to minimize anthropogenic impacts to resident and migratory sea turtles using park waters.

Synchronous spawning of nursery-raised elkhorn coral (Acropora palmata) outplanted to reefs in the Florida Keys (United States)

Here, we provide the first reports of spawning activity by Acropora palmata colonies outplanted to reefs in Florida, USA. In 2020, we observed light spawning from A. palmata colonies five years after they had been outplanted on two Florida reefs. In 2021 and 2022, we observed outplanted A. palmata colonies spawning synchronously with other nearby (&amp;lt;3 m) outplants and wild colonies more than 100 m away. During the 2022 spawning event, some colonies spawned in as few as four years after they had been outplanted. Among all spawning seasons, gametes collected from the outplanted colonies yielded high fertilization rates and viable larvae. These observations are promising for A. palmata restoration as they indicate fragments of A. palmata can spawn four years after outplanting and that efforts to restore A. palmata may be close to achieving the first step towards self-sustaining populations that can produce viable larvae, resulting in an increase in the population’s genotypic diversity upon successful recruitment to the reef.

Operational Ecoforecasting for Coral Reefs Using Artificial Intelligence and Integrated Near Real-Time Environmental Data

A synthesis of information products about environmental stressors provided in near real-time can serve environmental managers who seek to act decisively before stressors become unmanageable. We have created ecological forecasts, i. e., ecoforecasts, based on input from a variety of environmental sensors that report in near real- time, and we subsequently send those ecoforecasts to environmental managers. The application behind these ecoforecasts is Python-based software that uses an artificial intelligence (AI) inference engine called an expert system. This National Oceanic and Atmospheric Administration (NOAA) Environmental Information Synthesizer (NEIS), formerly the Environmental Information Synthesizer for Expert Systems (EISES), has been developed over two decades to meet the needs of environmental managers and scientists. NEIS integrates environmental data from multiple sources, including in situ and satellite sensors. The application produces ecoforecasts designed to identify environmental conditions conducive to mass coral bleaching and bleaching of specific coral species, as well as other marine environmental events such as algal blooms. This study evaluates the efficacy of coral bleaching ecoforecasts generated by NEIS for the Florida Reef Tract covering the years 2005–2017.

Blood analytes of hawksbill sea turtles (Eretmochelys imbricata) from Florida waters: reference intervals and size-relevant correlations

Assessments of health variables in wild animal populations have evolved into important tools for characterizing spatiotemporal population trends and fitness, effects of stressors, diseases, and ecosystem health. Blood as a sample matrix can be obtained fairly non-invasively in the field, with preservation and sample processing techniques that allow for readily available routine and advanced diagnostic testing of blood. For wild-caught hawksbill sea turtles (Eretmochelys imbricata) foraging in southeastern Florida, USA, the objectives of this study were to (1) establish reference intervals for hematological and 24 plasma biochemical analytes, (2) determine length-and body condition-specific relationships with blood analytes, and (3) determine how water temperature influenced plasma biochemical analytes. Reference intervals were established for clinically normal juvenile (n = 26) and subadult (n = 39) hawksbills, with descriptive data reported for adult turtles (n = 3). Although subadults (mainly captured at Palm Beach County) were heavier and larger with greater body depth, juveniles (mainly captured at Monroe County) had a higher body condition index. Positive length-specific correlations were identified for packed cell volume, eosinophils, aspartate aminotransferase, phosphorus, cholesterol, glutamate dehydrogenase, total protein, albumin, and globulins, with negative correlations including alkaline phosphatase, creatine kinase, calcium, calcium to phosphorus ratio, and glucose. Subadults had less frequent morphological features of red blood cell regeneration compared to juveniles. These findings provide insight into life-stage class differences regarding hematopoiesis, antigenic stimulation, somatic growth, dietary shifts, nutritional status, osmoregulation, metabolism, physical activity or stress levels, and possible habitat differences. Life-stage class is the likely driver for the observed blood analyte differences, in addition to influences from water temperature. The data herein offer baseline information for a snapshot in time for critically endangered hawksbills inhabiting the Florida reef system and for answering individual-and population-relevant questions of relevance to conservation and population management.

The microscopic threat with a macroscopic impact: Microplastics along the southeast Florida reef tract

Microplastics decrease oceanic water quality and negatively impact marine life. This research quantified and classified marine plastic pollution along the Southeast Florida Reef Tract (SEFRT) to estimate the risk of microplastic damage to corals in this region. Surface and bottom water samples were collected at seven sites along the SEFRT over the course of six months and were analyzed for microplastic content. FTIR spectrophotometry was used to evaluate microplastic composition. Overall, seven plastic polymers were found across a total of 1204 microplastic items. Five contaminants were also identified, indicating that microplastics may be congregators of these hazardous contaminants. Significantly more total plastics were found in surface samples than in bottom samples, but plastic quantities were not significantly different when month, depth, and location were combined. Plastics were determined to have entered the ocean from multiple sources; in order to protect vulnerable reef ecosystems in this area, a two-factor approach is necessary to halt the release of microplastics into the ocean, including widespread plastic clean-up efforts and improvements to plastic waste management.

Morphological and transcriptional effects of crude oil and dispersant exposure on the marine sponge Cinachyrella alloclada

Marine sponges play important roles in benthic ecosystems. More than providing shelter and food to other species, they help maintain water quality by regulating nitrogen and ammonium levels in the water, and bioaccumulate heavy metals. This system, however, is particularly sensitive to sudden environmental changes including catastrophic pollution event such as oil spills. Hundreds of oil platforms are currently actively extracting oil and gas in the Gulf of Mexico. To test the vulnerability of the benthic ecosystems to oil spills, we utilized the Caribbean reef sponge, Cinachyrella alloclada, as a novel experimental indicator. We have exposed organisms to crude oil and oil dispersant for up to 24 h and measured resultant gene expression changes. Our findings indicate that 1-hour exposure to water accommodated fractions (WAF) was enough to elicit massive shifts in gene expression in sponges and host bacterial communities (8052 differentially expressed transcripts) with the up-regulation of stress related pathways, cancer related pathways, and cell integrity pathways. Genes that were upregulated included heat shock proteins, apoptosis, oncogenes (Rab/Ras, Src, CMYC), and several E3 ubiquitin ligases. 24-hour exposure of chemically enhanced WAF (CE-WAF) had the greatest impact to benthic communities, resulting in mostly downregulation of gene expression (4248 differentially expressed transcripts). Gene deregulation from 1-hour treatments follow this decreasing trend of toxicity: WAF > CE-WAF > Dispersant, while the 24-hour treatment showed a shift to CE-WAF > Dispersant > WAF in our experiments. Thus, this study supports the development of Cinachyrella alloclada as a research model organism and bioindicator species for Florida reefs and underscores the importance of developing more efficient and safer ways to remove oil in the event of a spill catastrophe.

A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies

Stony coral tissue loss disease (SCTLD) has been causing significant whole colony mortality on reefs in Florida and the Caribbean. The cause of SCTLD remains unknown, with the limited concurrence of SCTLD-associated bacteria among studies. We conducted a meta-analysis of 16S ribosomal RNA gene datasets generated by 16 field and laboratory SCTLD studies to find consistent bacteria associated with SCTLD across disease zones (vulnerable, endemic, and epidemic), coral species, coral compartments (mucus, tissue, and skeleton), and colony health states (apparently healthy colony tissue (AH), and unaffected (DU) and lesion (DL) tissue from diseased colonies). We also evaluated bacteria in seawater and sediment, which may be sources of SCTLD transmission. Although AH colonies in endemic and epidemic zones harbor bacteria associated with SCTLD lesions, and aquaria and field samples had distinct microbial compositions, there were still clear differences in the microbial composition among AH, DU, and DL in the combined dataset. Alpha-diversity between AH and DL was not different; however, DU showed increased alpha-diversity compared to AH, indicating that, prior to lesion formation, corals may undergo a disturbance to the microbiome. This disturbance may be driven by Flavobacteriales, which were especially enriched in DU. In DL, Rhodobacterales and Peptostreptococcales–Tissierellales were prominent in structuring microbial interactions. We also predict an enrichment of an alpha-toxin in DL samples which is typically found in Clostridia. We provide a consensus of SCTLD-associated bacteria prior to and during lesion formation and identify how these taxa vary across studies, coral species, coral compartments, seawater, and sediment.

Introduction to Harvest Tags for Marine Recreational Fisheries

Managing recreational fisheries requires balancing sustainability against allowing as much access and harvest as possible. Maintaining sustainability is made harder by discard mortality where any fishing activity, even catch and release, risks fish dying from injuries, predation, or other causes. This is especially a problem for Florida reef fish species that live at depths and habitats where barotrauma increases mortality and depredation by larger fish, sharks, or marine mammals increases it further. Harvest (or trip) tags could reduce overharvest, lower discard mortality, and allow anglers more freedom to choose when to fish. Harvest tags would limit the total fish harvested, but could eliminate one of the least popular current management restrictions, harvest seasons. This publication describes harvest tag approaches, discussing how they are already used in fishing and hunting and describing some of the potential benefits and costs if they were applied in Florida.

Multi-year coral recruitment study across the Florida Reef Tract reveals boom-or-bust pattern among broadcast spawners and consistency among brooders

Scleractinian coral populations are in global decline, and successful recruitment is fundamental to community persistence and recovery, but recruitment may vary by coral reproductive mode. Using settlement tiles, we assessed coral recruitment over 3 consecutive years across 4 regions (~300 km) of the Florida Reef Tract (FRT) to determine whether spatio-temporal variation differs between brooding and broadcast spawning corals and whether coral recruit distributions correlate with adult coral live tissue area, site temperature, or depth. We deployed 32 tiles to each of 30 sites with depths ranging from 2 to 18 m; tiles were retrieved and replaced annually. From 2016-2018, we counted 11633 scleractinian coral recruits, most of which belonged to the Siderastreidae, Agariciidae, Poritidae, and Faviidae families. Faviid recruits were rare (&lt;1%). While recruitment of brooding agariciids and poritids was relatively stable across the 3 yr, recruitment of broadcast spawning siderastreids increased an unprecedented 70.7-fold from 2017 to 2018, in a boom that spanned 19 sites across the FRT. Elevated temperature during the preceding reproductive season was a significant predictor of low recruitment for all groups except siderastreids and faviids, and recruitment of brooding taxa was positively linked to adult confamilial live tissue area. For siderastreids, adult live tissue area was also related to recruitment, but the direction of the relationship differed by year and region. The unprecedented high recruitment of siderastreids in Florida, preceded by 2 yr of comparatively low recruitment, demonstrates that broadcast-spawning scleractinians are among the marine taxa capable of employing boom-and-bust recruitment cycles over geographically widespread areas.

Low net carbonate accretion characterizes Florida’s coral reef

Coral reef habitat is created when calcium carbonate production by calcifiers exceeds removal by physical and biological erosion. Carbonate budget surveys provide a means of quantifying the framework-altering actions of diverse assemblages of marine species to determine net carbonate production, a single metric that encapsulates reef habitat persistence. In this study, carbonate budgets were calculated for 723 sites across the Florida Reef Tract (FRT) using benthic cover and parrotfish demographic data from NOAA’s National Coral Reef Monitoring Program, as well as high-resolution LiDAR topobathymetry. Results highlight the erosional state of the majority of the study sites, with a trend towards more vulnerable habitat in the northern FRT, especially in the Southeast Florida region (− 0.51 kg CaCO3 m−2 year−1), which is in close proximity to urban centers. Detailed comparison of reef types reveals that mid-channel reefs in the Florida Keys have the highest net carbonate production (0.84 kg CaCO3 m−2 year−1) and indicates that these reefs may be hold-outs for reef development throughout the region. This study reports that Florida reefs, specifically their physical structure, are in a net erosional state. As these reefs lose structure, the ecosystem services they provide will be diminished, signifying the importance of increased protections and management efforts to offset these trends.