Florida Keys Reef Tract Research Articles

Hurricane Irma Linked to Coral Skeletal Density Shifts on the Florida Keys Reef Tract.

Coral reefs are at risk due to various global and local anthropogenic stressors that impact the health of reef ecosystems worldwide. The most recent climate models predict that climate change will increase the frequency and intensity of tropical storms. This increased storm occurrence and strength will likely compromise coral reef structures and habitats for reef-dwelling organisms, including across the Florida Keys Reef Tract (FKRT), the most extensive tropical reef system along the US coast. While several recent studies reveal the chronic impacts of tropical storms on corals, relatively little is known about the effects of major storm events on coral growth and how these effects vary over spatiotemporal scales. Here, I characterize the skeletal growth of two common Caribbean reef-building coral species, Siderastrea siderea and Pseudodiploria strigosa, before and after Hurricane Irma to investigate the storm's impact on coral skeletal growth on inner and outer reefs of the FKRT. Coral cores were extracted from both species at four inner and four outer reef sites in May 2015, before Hurricane Irma struck the Florida Keys in September 2017. Subsequently, 33 micro-cores were collected in May 2019, two years after the storm traversed our previously cored coral colonies. A three-way ANOVA model with storm, species, and reef location as the three factors was used to assess the impact of the storm on each of three growth parameters: skeletal density, linear extension, and calcification rates. Results reveal no difference in the coral annual skeletal growth parameters pre- and post-Hurricane Irma, although previously quantified differences in these growth parameters across species and location were observed. However, analysis of the "yearly" change in annual skeletal growth parameters showed significant differences in skeletal density across groups before and after Hurricane Irma, but not for linear extension and calcification rates. Our findings improve an understanding of the impacts of tropical storms on coral skeletal growth and offer new insights into how we can employ corals' innate growth capacities to help conserve coral reefs under climate change.

Re-evaluating Marine Isotope Stage 5a paleo-sea-level trends from across the Florida Keys reef tract

Unraveling how Global Mean Sea Level (GMSL) fluctuated during past warm periods can improve our understanding of linkages between sea-level fluctuations, orbital forcing, and ice-sheet dynamics. Current estimates of GMSL for Marine Isotope Stages (MIS) 5a and 5c — two warm intervals following the relatively well-documented MIS 5e — contain meters of uncertainty and fewer data due to several challenges. These challenges include concealment of datable in-situ coral facies by MIS 1 deposits and inaccessibility due to submergence by modern sea level. We present a comprehensive dataset based on U–Th dating and stratigraphic correlation of 23 cores totaling over 170 m of recovered coral-reef deposits across the tectonically stable Florida Keys Reef Tract (FKRT). Following detailed facies descriptions, 34 in-situ, minimally altered aragonitic coral samples (≤2.7% calcite) below the Holocene-Pleistocene boundary were targeted for U–Th geochronology. Fourteen closed-system coral U–Th ages from MIS 5a include the commonly used sea-level indicator Acropora palmata, but also the massive coral taxa Pseudodiploria strigosa, Siderastrea siderea, Orbicella spp., and Porites astreoides. Dating yielded ages in the range of 88–81 ka (average 2σ uncertainty of less than 200 years). These ages suggest MIS 5a reef initiation at ∼88 ka BP, a peak near 83 ka with minimum elevations between −6.0 ± 0.5 and −5.6 ± 0.5 m MSL (2σ uncertainty and subsidence-corrected), and reef termination and sea-level fall by ∼81 ka BP. Notably, the range of peak MIS 5a relative sea-level estimates of −6.5 to −5.1 m MSL are more than 2 m shallower (higher) than previous estimates of −11 to −9 m. Our higher resolution regional sea-level reconstruction across four subregions of the Florida Keys reef tract aligns with changes in July insolation at 65° N: a trend that most other records, such as deep-sea sediments, do not have the accuracy and precision to resolve. Three massive coral samples from MIS 5c, consisting of Pseudodiploria clivosa, and Orbicella spp., yielded ages in the range of 104 to 99 ka (average 2σ uncertainty less than 200 years); however, because only one sample met the closed-system criteria, our ability to estimate MIS 5c sea level is relatively limited. More empirical estimates of sea-level from the MIS 5a and MIS 5c intervals based on numerical dating of reliable local sea-level constraints are critical for GMSL calculations and relating changes in sea-level amplitude and timing to global ice volume modeling and glacio-isostatic effects, all of which can improve predictions of future sea-level changes in coastal regions.

Marine Debris Harbor Unique, yet Functionally Similar Cryptofauna Communities.

Human-made debris is entering the ocean at alarming rates. These artificial structures are becoming habitats for small marine taxa known as cryptofauna. Cryptofauna are among the most essential reef taxa; however, little is known about these organisms, let alone their fate considering degrading coral reefs and increasing anthropogenic disturbance. The current study explores differences in naturally occurring cryptofauna biodiversity compared to those inhabiting benthic marine debris. To explore this difference, we measured invertebrate diversity from autonomous reef monitoring structures (ARMS) located on patch reefs along the middle Florida Keys reef tract. ARMS were used as a proxy for natural structure to compare to marine debris removed from five reef locations. Plastic debris was the most abundant of all the debris material collected. Wood and concrete were identified as covariates since they are sourced from wooden lobster traps. Taxa diversity varied significantly between ARMS and debris, indicating that each structural unit contained significantly different and diverse communities. The most influential taxa identified included commensal shrimps, hermit crabs, brittle stars, segmented worms, and several families of crabs. Additionally, while functional richness increased with taxa richness for ARMS communities, debris communities showed decreasing functional richness and high functional similarity, suggesting a specialization of debris-specific taxa. Overall, these data assist in better understanding of the marine community ecology surrounding anthropogenic marine debris for future debris removal and management practices for comprehensive reef health.

Abundance, patterns, and taxa associations of anthropogenic marine debris on reefs in the middle Florida Keys

The Florida Keys reef tract has rapidly shifted from a structurally complex, hard coral-dominated reef to a less rugose, soft coral-dominated reef. This transition has been facilitated by persistent anthropogenic stressors including recreational and commercial fishing and increased anthropogenic marine debris. During the summers of 2020–2022, benthic censuses were conducted to identify substrate and marine debris composition for 30 reefs in the middle Florida Keys. Inshore reefs contained higher rugosity, coral cover, and marine debris abundance primarily comprised of monofilament and rope from fishing traps. Plastic items (e.g., ropes and monofilament) overall had the highest species diversity. Additionally, marine debris appears to promote turf algae growth on inshore reefs. While is it not yet possible to determine if this pattern of high debris nearshore is due to proximity to onshore debris sources, accumulation due to higher rugosity snagging debris, or increased debris removal efforts offshore, these differences in marine debris types and abundances suggest variability in potential impacts of debris on marine biota on inshore versus offshore reefs. Therefore, the differential use of marine debris by associated biota should be considered in marine debris management practices.

Zooplankton derived organic matter as a food source for benthic coral

Zooplankton derived organic matter, such as fecal pellets and carcasses, may be a vital source of nutrients for benthic corals. In shallow tropical reefs, settling particles (organic matter) often reach the benthos, in contrast with deeper systems where the particles are recycled/transformed prior to reaching the benthos. Furthermore, zooplankton fecal pellets aggregate together and entrain additional organic matter, aiding in the transference of organic matter to reefs. These settling particles can be ingested by coral as a supplement to the nutrients obtained from their symbionts (zooxanthellae). Settling particles can provide essential lipids, which are produced by phytoplankton and repackaged by zooplankton, to coral reefs. Settling particles collected in the Upper Florida Keys Reef Tract were used to evaluate the role of zooplankton in the transportation of organic matter. The general chemical composition remained constant in the sediment particles, and total sediment flux generally decreased as distance from shore increased. Through lipid and stable isotope analyses, zooplankton sources were determined to contribute approximately 50% of the total lipid content in the particles with smaller contributions coming from phytoplankton, bacteria, vascular plants, and coral. The repackaging of phytoplankton derived organic matter by zooplankton demonstrates zooplankton as a primary driver of settling particles in coral reefs. The shallow water column in the reef habitat results in less recycling and remineralization of sediment particles compared to the open ocean, leading to the direct transport of organic matter from the surface to the benthos. Therefore, zooplankton abundance and composition play a vital role in determining the availability of organic matter and settling particles on coral reefs. Without zooplankton transporting organic matter throughout the water column reefs would likely decline, meaning it is imperative that zooplankton derived organic matter is considered when studying coral reefs.

Apparently Seasonal Variations of the Seawater Sr/Ca Ratio Across the Florida Keys Reef Tract

AbstractA 4‐year time‐series of surface seawater Sr/Ca ratios was assembled across a section of the Florida Keys Reef Tract, in order to uncover any variability that might explain previously reported anomalies in regional calibrations of the coral aragonite Sr/Ca paleotemperature proxy. Samples were collected semiannually on a grid of 54 sites, from September of 2016 until January of 2020. The 325‐km2 grid extended from the ocean shore to the forereef wall and from the east end of Long Key to the west end of Marathon. A novel ICP‐AES method was used to measure the Sr/Ca ratio, with ratio calibration and normalization against an in‐house seawater reference, yielding a long‐term precision of better than 0.2%. Significant variations (2%–3%) of the seawater Sr/Ca ratio were found. While it was relatively constant offshore, near the coast the ratio alternated seasonally between higher and lower values, generally resulting in seaward Sr/Ca gradients that were markedly negative in summer but reversed in winter. Inshore seawater Sr/Ca ratios ranged from a summer high of 8.83 mmol/mol to a winter low of 8.54 mmol/mol, the difference corresponding to a potential bias of ∼5.5°C in terms of the coral Sr/Ca paleotemperature proxy. This seasonal variation should diminish the slope of empirical Sr/Ca–SST calibration lines, as has indeed been observed in prior studies with local coral species. Open ocean samples obtained from the Atlantic, Indian, and Pacific enlarge the published Sr/Ca data set for surface seawater and show a much smaller variability of 8.646 ± 0.018 mmol/mol (0.2%).

Correction to: Genetic structure and diversity of the mustard hill coral Porites astreoides along the Florida Keys reef tract

Correction to: Genetic structure and diversity of the mustard hill coral Porites astreoides along the Florida Keys reef tract

Shotgun Proteomic Analysis of Thermally Challenged Reef Corals

Although coral reef ecosystems across the globe are in decline due to climate change and other anthropogenic stressors, certain inshore reefs of the Upper Florida Keys reef tract have persisted, with some even thriving, under marginalized conditions. To better understand the molecular basis of the thermotolerance displayed by these corals, a laboratory-based temperature challenge experiment that also featured conspecifics from a more stress-susceptible offshore reef was conducted with the common Caribbean reef-builderOrbicella faveolata, and the proteomes of both the coral hosts and their endosymbiotic dinoflagellate communities were profiled in (1) controls, (2) corals that succumbed to high-temperature stress and bleached, and (3) those that instead acclimated to high temperaturesex situ. Proteomic signatures varied most significantly across temperatures, host genotypes, and Symbiodiniaceae assemblages, and the two eukaryotic compartments of this mutualism exhibited distinct proteomic responses to high temperatures. Both partners maintained high levels of molecular chaperones and other canonical (eukaryotic) stress response (CSR) proteins in all treatments (including controls). Instead, proteins involved in lipid trafficking, metabolism, and photosynthesis played greater roles in the holobionts’ high-temperature responses, and these energy mobilization processes may have sustained the elevated protein turnover rates associated with the constitutively active CSR.

Genetic structure and diversity of the mustard hill coral Porites astreoides along the Florida Keys reef tract

Increases in local and global stressors have led to major declines in coral populations throughout the western Atlantic. While abundances of other species have declined, however, the relative abundance of the mustard hill coral, Porites astreoides, has increased. Porites astreoides is relatively resilient to some stressors, and because of its mixed reproductive strategies, its populations often recover quickly following disturbances. The ability for P. astreoides to continue as a potential “winner” in western Atlantic reefs relies on maintaining sufficient genetic variation within populations to support acclimatization and adaptation to current and future environmental change. Without high genetic diversity and gene flow within the population, it would have limited capacity for adaptation and the species’ competitive advantages could be short-lived. In this study, we determined the genetic relatedness of 37 P. astreoides colonies at four shallow reefs along the offshore Florida Keys Reef Tract (FKRT), a region particularly hard-hit by recent disturbances. Using previously designed microsatellite markers, we determined the genetic diversity and connectivity of individuals among and between sites. Our results suggest that the FKRT likely contains a single, well-mixed genetic population of P. astreoides, with high levels of gene flow and evidence for larval migration throughout the region. This suggests that regional populations of P. astreoides likely have a higher chance of maintaining resilience than many other western Atlantic species as they face current and future disturbances.

Physiological Differences in Bleaching Response of the Coral Porites astreoides Along the Florida Keys Reef Tract During High-Temperature Stress

The Florida Keys reef tract (FKRT) has a unique geological history wherein Holocene sea-level rise and bathymetry interacted, resulting in a reef-building system with notable spatial differences in reef development. Overprinted on this geologic history, recent global and local stressors have led to degraded reefs dominated by fleshy algae, soft corals, and sponges. Here, we assessed how coral physiology (calcification rate, tissue thickness, reproduction, symbiosis, and bleaching) varies seasonally (winter vs. summer) and geographically using 40 colonies of the mustard hill coral Porites astreoides from four sites across 350 km along the FKRT from 2015 to 2017. The study coincided with a high-temperature event in late summer 2015 that caused heterogeneous levels of coral bleaching across sites. Bleaching severity differed by site, with bleaching response more aligned with heat stress retroactively calculated from local degree heating weeks than those predicted by satellites. Despite differences in temperature profiles and bleaching severity, all colonies hosted Symbiodiniaceae of the same genus (formerly Clade A and subtypes). Overall, P. astreoides at Dry Tortugas National Park, the consistently coolest site, had the highest calcification rates, symbiont cell densities, and reproductive potential (all colonies were reproductive, with most planula larvae per polyp). Corals at Dry Tortugas and Fowey Rocks Light demonstrated strong seasonality in net calcification (higher in summer) and did not express visual or partial-mortality responses from the bleaching event; in contrast, colonies in the middle and southern part of the upper keys, Sombrero Key and Crocker Reef, demonstrated similar reduced fitness from bleaching, but differential recovery trajectories following the heat stress. Identifying reefs, such as Dry Tortugas and possibly Fowey Rocks Light that may serve as heat-stress refugia, is important in selecting candidate sites for adaptive reef-management strategies, such as selective propagation and assisted gene flow, to increase coral-species adaptation to ocean warming.

Environmental specialization and cryptic genetic divergence in two massive coral species from the Florida Keys Reef Tract.

Broadcast-spawning coral species have wide geographical ranges spanning strong environmental gradients, but it is unclear how much spatially varying selection these gradients actually impose. Strong divergent selection might present a considerable barrier for demographic exchange between disparate reef habitats. We investigated whether the cross-shelf gradient is associated with spatially varying selection in two common coral species, Montastraea cavernosa and Siderastrea siderea, in the Florida Keys. To this end, we generated a de novo genome assembly for M. cavernosa and used 2bRAD to genotype 20 juveniles and 20 adults of both species from each of the three reef zones to identify signatures of selection occurring within a single generation. Unexpectedly, each species was found to be composed of four genetically distinct lineages, with gene flow between them still ongoing but highly reduced in 13.0%-54.7% of the genome. Each species includes two sympatric lineages that are only found in the deep (20m) habitat, while the other lineages are found almost exclusively on the shallower reefs (3-10m). The two "shallow" lineages of M. cavernosa are also specialized for either nearshore or offshore: comparison between adult and juvenile cohorts indicates that cross-shelf migrants are more than twice as likely to die before reaching adulthood than local recruits. S. siderea and M. cavernosa are among the most ecologically successful species on the Florida Keys Reef Tract, and this work offers important insight into the genomic background of divergent selection and environmental specialization that may in part explain their resilience and broad environmental range.

Education and Research: A Symbiosis to Better Understand a Novel Coral Disease

Ongoing ecological events, such as new and emerging diseases, provide an important platform for education and research. Field courses and undergraduate research projects can be critical to assisting students with learning scientific skills and career discernment as these experiences provide more one-on-one instruction and an immersive learning environment. A novel coral disease called “Stony Coral Tissue Loss Disease” (SCTLD) provided one such opportunity. SCTLD is characterized by rapid progression with entire coral heads dying within 2–3 weeks after initial observation of the onset of symptoms. At a wider geographic scale, the disease has migrated with extreme velocity and has now been documented across the Caribbean from as far North as the Southeast Florida Reef Tract, as far South as St. Lucia, and as far West as Honduras and Belize. Here, I summarize what is currently known about SCTLD and document an educational field course that involved eight undergraduate students with visits to multiple locations along the Florida Keys Reef Tract during the disease progression in March 2019. Students were able to observe sites where SCTLD had been present for over 2 years and sites where the disease was only just emerging for observational comparison. Student educational outcomes from field trips and activities will be discussed. Current research and educational activities can interact to enhance each other, creating a positive feedback loop. Future directions for research, educational opportunities, and their interaction to accelerate understanding of this novel disease are discussed.

Irradiance, photosynthesis and elevated pCO2 effects on net calcification in tropical reef macroalgae

Calcifying tropical macroalgae produce sediment, build three-dimensional habitats, and provide substrate for invertebrate larvae on reefs. Thus, lower calcification rates under declining pH and increasing ocean pCO2, or ocean acidification, is a concern. In the present study, calcification rates were examined experimentally under predicted end-of-the-century seawater pCO2 (1116 μatm) and pH (7.67) compared to ambient controls (pCO2 409 μatm; pH 8.04). Nine reef macroalgae with diverse calcification locations, calcium carbonate structure, photophysiology, and site-specific irradiance were examined under light and dark conditions. Species included five from a high light patch reef on the Florida Keys Reef Tract (FKRT) and four species from low light reef walls on Little Cayman Island (LCI). Experiments on FKRT and LCI species were conducted at 500 and 50 μmol photons m−2 s−1 in situ irradiance, respectively. Calcification rates independent of photosystem-II (PSII) were also investigated for FKRT species. The most consistent negative effect of elevated pCO2 on calcification rates in the tropical macroalgae examined occurred in the dark. Most species (89%) had net calcification rates of zero or net dissolution in the dark at low pH. Species from the FKRT that sustained positive net calcification rates in the light at low pH also maintained ~30% of their net calcification rates without PSII at ambient pH. However, calcification rates in the light independent of PSII were not sustained at low pH. Regardless of these low pH effects, most FKRT species daily net calcification rates, integrating light/dark rates over a 24h period, were not significantly different between low and ambient pH. This was due to a 10-fold lower dark, compared to light, calcification rate, and a strong correspondence between calcification and photosynthetic rates. Interestingly, low-light species sustained calcification rates on par with high-light species without high rates of photosynthesis. Low-light species' morphology and physiology that promote high calcification rates at ambient pH, may increase their vulnerability to low pH. Our data indicate that the negative effect of elevated pCO2 and low pH on tropical macroalgae at the organismal level is their impact on dark net calcification, probably enhanced dissolution. However, elevated pCO2 and low pH effects on macroalgae daily calcification rates are greatest in species with lower net calcification rates in the light. Thus, macroalgae able to maintain high calcification rates in the light (high and low irradiance) at low pH, and/or sustain strong biotic control with high [H+] in the bulk seawater, are expected to dominate under global change.

Disturbances drive changes in coral community assemblages and coral calcification capacity

AbstractAnthropogenic environmental change has increased coral reef disturbance regimes in recent decades, altering the structure and function of many coral reefs globally. In this study, we used coral community survey data collected from 1996 to 2015 to evaluate reef‐scale coral calcification capacity (CCC) dynamics with respect to recorded pulse disturbances for 121 reef sites in the Main Hawaiian Islands and Mo'orea (French Polynesia) in the Pacific and the Florida Keys Reef Tract and St. John (U.S. Virgin Islands) in the western Atlantic. CCC remained relatively high in the Main Hawaiian Islands in the absence of recorded widespread disturbances; declined and subsequently recovered in Mo'orea following a crown‐of‐thorns sea star outbreak, coral bleaching, and major cyclone; decreased and remained low following coral bleaching in the Florida Keys Reef Tract; and decreased following coral bleaching and disease in St. John. Individual coral taxa have variable calcification rates and susceptibility to disturbances because of their differing life‐history strategies. As a result, temporal changes in CCC in this study were driven by shifts in both overall coral cover and coral community composition. Analysis of our results considering coral life‐history strategies showed that weedy corals generally increased their contributions to CCC over time while the contribution of competitive corals decreased. Shifts in contributions by stress‐tolerant and generalist corals to CCC were more variable across regions. The increasing frequency and intensity of disturbances under 21st century global change therefore has the potential to drive lower and more variable CCC because of the increasing dominance of weedy and some stress‐tolerant corals.

The unprecedented loss of Florida's reef-building corals and the emergence of a novel coral-reef assemblage.

Over the last half century, climate change, coral disease, and other anthropogenic disturbances have restructured coral‐reef ecosystems on a global scale. The disproportionate loss of once‐dominant, reef‐building taxa has facilitated relative increases in the abundance of “weedy” or stress‐tolerant coral species. Although the recent transformation of coral‐reef assemblages is unprecedented on ecological timescales, determining whether modern coral reefs have truly reached a novel ecosystem state requires evaluating the dynamics of reef composition over much longer periods of time. Here, we provide a geologic perspective on the shifting composition of Florida's reefs by reconstructing the millennial‐scale spatial and temporal variability in reef assemblages using 59 Holocene reef cores collected throughout the Florida Keys Reef Tract (FKRT). We then compare the relative abundances of reef‐building species in the Holocene reef framework to data from contemporary reef surveys to determine how much Florida's modern reef assemblages have diverged from long‐term baselines. We show that the composition of Florida's reefs was, until recently, remarkably stable over the last 8000 yr. The same corals that have dominated shallow‐water reefs throughout the western Atlantic for hundreds of thousands of years, Acropora palmata, Orbicella spp., and other massive coral taxa, accounted for nearly 90% of Florida's Holocene reef framework. In contrast, the species that now have the highest relative abundances on the FKRT, primarily Porites astreoides and Siderastrea siderea, were rare in the reef framework, suggesting that recent shifts in species assemblages are unprecedented over millennial timescales. Although it may not be possible to return coral reefs to pre‐Anthropocene states, our results suggest that coral‐reef management focused on the conservation and restoration of the reef‐building species of the past, will optimize efforts to preserve coral reefs, and the valuable ecosystem services they provide into the future.

Differential disease incidence and mortality of inner and outer reef corals of the upper Florida Keys in association with a white syndrome outbreak

The Florida Keys Reef Tract has suffered extraordinary losses in live coral cover over the past four decades and is now battling an unprecedented coral disease outbreak. Here, colonies of Siderastrea siderea (Ellis and Solander, 1786) and Pseudodiploria strigosa (Dana, 1846) were tracked over 3 yrs (2015–2017) across two pairs of inner and outer reef sites in the upper keys, offering a unique perspective into the distribution of disease throughout the reef tract. We found that outer reef colonies of both coral species exhibited greater disease incidence and mortality associated with this ongoing epidemic, while inner patch reef colonies remained largely unaffected. These findings suggest that ecological or biological factors that differentiate coral populations across these reef zones may play an important role in susceptibility to disease.

Microbial Associations of Four Species of Algal Symbiont-bearing Foraminifers from the Florida Reef Tract, Usa

Abstract While microbiome research is a rapidly expanding field of study, relatively little is known of the microbiomes associated with Foraminifera. This preliminary study investigated microbes associated with four species of Foraminifera, representing two taxonomic orders, which host three kinds of algal endosymbionts. A major objective was to explore potential influences on the microbiome composition, including phylogenetic relatedness among the host species, similarities in algal symbionts hosted, and environmental conditions from which the specimens were collected. Samples examined from two locations along the middle Florida Keys reef tract included 45 foraminiferal specimens and four environmental samples. Bacterial DNA extraction from individual specimens was followed by amplification and amplicon sequencing of the V4 variable region of the 16S rRNA gene; results were obtained from 21 specimens. The Order Miliolida, Family Soritidae, was represented by 5–8 specimens of each of three species: Archaias angulatus and Cyclorbiculina compressa, which both host chlorophyte symbionts, and Sorites orbiculus, which hosts dinoflagellate symbionts. Three Ar. angulatus specimens from which the microbiome was successfully sequenced shared 177 OTUs. Six C. compressa specimens successfully sequenced shared 58 OTUs, of which 31 were also shared by the three specimens of Ar. angulatus. Four successfully sequenced S. orbiculus specimens shared 717 unique OTUs. The 13 soritid specimens shared 26 OTUs, 23 of which represented Proteobacteria, predominantly of the bacterial family Rhodobacteraceae. The fourth foraminiferal species, Amphistegina gibbosa (Order Rotaliida) hosts diatom endosymbionts. Bacterial DNA extraction was attempted on 16 Am. gibbosa, including both normal-appearing and partly-bleached specimens. Only six OTUs, four of which represented Proteobacteria, were found in all eight specimens successfully sequenced. The partly bleached specimens shared nearly twice as many unique microbial OTUs (32) as the normal-appearing specimens (19). All Am. gibbosa specimens shared only four microbial OTUs with the soritid species, three of which may have been contaminants, indicating minimal commonality between the microbiomes of Am. gibbosa and the soritid taxa.

Apparent timing of density banding in the Caribbean coral Siderastrea siderea suggests complex role of key physiological variables

Skeletal growth bands in massive reef-building corals are increasingly used as proxies for environmental records despite an incomplete understanding of their formation. While the bands are known to arise from seasonal changes in light and temperature, conflicting reports about the timing of constituent high- and low-density growth bands have complicated the dating and interpretation of environmental signals recorded in corals’ growth histories. Here, we analyze 35 Siderastrea siderea cores extracted from inshore and offshore reef zones along the Florida Keys Reef Tract to investigate potential drivers of banding variability in this species. A previously proposed model of banding variation is applied to assess its potential to explain band timing in S. siderea. Colony growth characteristics and the timing of band deposition were obtained from the cores via computed tomography and were coupled with tissue thickness measurements and gender identification. Apparent time difference, or the perceived lag in coral growth response to changes in environmental conditions, was quantified for each coral core. Results suggest that linear extension, tissue thickness, and gender together do not fully explain the timing of band formation in S. siderea and therefore do not fully resolve the density patterns observed within this species. This finding suggests that other factors yet to be identified are partially determining the formation and appearance of density bands in S. siderea. The continued characterization of banding variability on scales ranging from the individual colony to entire reef systems will enrich our understanding of both coral growth and the environmental conditions to which corals are exposed.

Corals sustain growth but not skeletal density across the Florida Keys Reef Tract despite ongoing warming.

Through the continuous growth of their carbonate skeletons, corals record information about past environmental conditions and their effect on colony fitness. Here, we characterize century-scale growth records of inner and outer reef corals across ~200km of the Florida Keys Reef Tract (FKRT) using skeletal cores extracted from two ubiquitous reef-building species, Siderastrea siderea and Pseudodiploria strigosa. We find that corals across the FKRT have sustained extension and calcification rates over the past century but have experienced a long-term reduction in skeletal density, regardless of reef zone. Notably, P. strigosa colonies exhibit temporary reef zone-dependent reductions in extension rate corresponding to two known extreme temperature events in 1969-1970 and 1997-1998. We propose that the subtropical climate of the FKRT may buffer corals from chronic growth declines associated with climate warming, though the significant reduction in skeletal density may indicate underlying vulnerability to present and future trends in ocean acidification.

A 3,000-year lag between the geological and ecological shutdown of Florida's coral reefs.

The global-scale degradation of coral reefs has reached a critical threshold wherein further declines threaten both ecological functionality and the persistence of reef structure. Geological records can provide valuable insights into the long-term controls on reef development that may be key to solving the modern coral-reef crisis. Our analyses of new and existing coral-reef cores from throughout the Florida Keys reef tract (FKRT) revealed significant spatial and temporal variability in reef development during the Holocene. Whereas maximum Holocene reef thickness in the Dry Tortugas was comparable to elsewhere in the western Atlantic, most of Florida's reefs had relatively thin accumulations of Holocene reef framework. During periods of active reef development, average reef accretion rates were similar throughout the FKRT at ~3m/ky. The spatial variability in reef thickness was instead driven by differences in the duration of reef development. Reef accretion declined significantly from ~6,000years ago to present, and by ~3,000years ago, the majority of the FKRT was geologically senescent. Although sea level influenced the development of Florida's reefs, it was not the ultimate driver of reef demise. Instead, we demonstrate that the timing of reef senescence was modulated by subregional hydrographic variability, and hypothesize that climatic cooling was the ultimate cause of reef shutdown. The senescence of the FKRT left the ecosystem balanced at a delicate tipping point at which a veneer of living coral was the only barrier to reef erosion. Modern climate change and other anthropogenic disturbances have now pushed many reefs past that critical threshold and into a novel ecosystem state, in which reef structures built over millennia could soon be lost. The dominant role of climate in the development of the FKRT over timescales of decades to millennia highlights the potential vulnerability of both geological and ecological reef processes to anthropogenic climate change.