Flora Of Japan Research Articles

Genetic information as a basis for conservation genetics of national endangered species of wild fauna and flora in Japan

Genetic information as a basis for conservation genetics of national endangered species of wild fauna and flora in Japan

Complete mitochondrial DNA sequence of the giant water bug Kirkaldyia deyrolli (Hemiptera: Belostomatidae).

Giant water bugs (genus Kirkaldyia and Lethocerus) are well known species from aquatic habitats throughout the world’s subtropical and tropical areas. Only one species of the Kirkaldyia deyrolli is distributed in Japan. K. deyrolli has been designated as second category rare species according Law for Conservation of Endangered Species of Wild Fauna and Flora in Japan, in 2019. We analyzed, for the first time, the complete mitochondrial genomes of the giant water bug K. deyrolli from Japan using next-generation sequencing. The mitochondrial genome was a circular and 15,579 bp molecule that included 13 protein-coding genes (PCGs), 22 tRNA genes, and two ribosomal RNA genes, along with one AT-rich control region. The AT content value was 69.55%. The heavy strand was predicted to have nine PCGs and 15 tRNA genes, whereas the light strand was predicted to contain four PCGs, seven tRNA genes, and two rRNA genes. Start codons were variable for all PCGs: four ATA, three ATC, four ATG, two ATT genes as the start codon. Stop codons were of two types: TAA for 12 genes and TAG for one gene. Incomplete stop codon T was identified. The molecular phylogenetic relationship, inferred using 13 PCGs, was consistent with that reported in previous studies, which predicted a sister relationship to the genus Lethocerus.

An update and reassessment of fern and lycophyte diversity data in the Japanese Archipelago

The fern and lycophyte flora of Japan comprising 721 native taxa (including subspecies and varieties) plus 371 interspecific hybrids was reassessed using a nearly comprehensively sampled distribution map at 10 km resolution vouchered by 216,687 specimens, up-to-date cytotaxonomic information covering 74% of the taxa, and an rbcL sequence dataset covering 97.9% of the taxa. Spatial distribution of species richness and phylogenetic diversity was visualized. Apomixis was observed in 11.0% of the native taxa whose reproductive modes are known. The number of sexually reproducing polyploid taxa (n = 199) is less than sexual diploids (n = 241), and 30 of them are evidently allopolyploid, in contrast with the low number of possible autopolyploids (n = 4). Apomictic taxa were found to have smaller latitudinal ranges than sexual taxa or taxa with multiple reproductive modes. A morphological character dataset in Lucid format is provided for taxonomic identification of the native taxa.

The aquatic macrophyte flora of a small pond revealing high species richness in the Aomori Prefecture, Japan

A small semiartificial pond, revealing high species richness with respect to the aquatic macrophytes, was studied in the Aomori Prefecture, Japan. The pond had been completely formed ca. 10 years previously after excavation into a wet bog. To identify and evaluate its aquatic macrophyte flora during 2017–2018, we listed the species of aquatic vascular plants and charophytes in the pond and compared this list with those from the natural Japanese lakes using a database of aquatic flora in Japan. Two species were identified by molecular analyses because they lacked any reproductive organs, which were necessary for identifying the species level. We found a total of 57 taxa of aquatic macrophytes including 15 Red List species in Japan or Aomori Prefecture. Comparing the flora list with those from the 66 natural Japanese lakes surveyed since 2001, the pond was ranked fourth in the order of diversity (based on species richness) and rarity (based on numbers of Red List species). Therefore, the pond is an important aquatic environment in terms of aquatic macrophyte conservation in Japan. Interestingly, for a pond with such high species diversity, it is relatively small (0.14 km2), semiartificial, and relatively recently formed.

How well are biodiversity drivers reflected in protected areas? A representativeness assessment of the geohistorical gradients that shaped endemic flora in Japan

Protected areas function as a lifeboat that can preserve the origins and maintenance of biodiversity. We assessed the representativeness of biodiversity in existing protected areas in Japan using a distribution dataset and phylogenetic tree for 5565 Japanese vascular plant species. We first examined the overlap of species distribution with the existing protected areas and identified the minimum set representing all plant species. Second, we evaluated the relative importance of environmental variables in explaining the spatial arrangement of protected areas using a random forest model. Finally, we clarified how potential drivers of plant diversity were sufficiently captured within the protected areas network. Although the protected areas captured the majority of species, nearly half of the minimum set areas were selected from outside the existing protected areas. The locations of existing protected areas are mainly associated with geographical and socio-economic factors rather than key biodiversity features (including evolutionary distinctiveness). Moreover, critical biodiversity drivers, which include current climate, paleoclimatic stability, and geographical isolation, were biasedly emulated within the existing protected areas. These findings demonstrate that current conservation planning fails to represent the ecological and evolutionary processes relevant to species sorting, dispersal limitation, and allopatric speciation. In particular, under-representativeness of historically stable habitats that function as evolutionary hotspots or refugia in response to climate changes may pose a threat to the long-term persistence of Japan’s endemic biota. This study provides a fundamental basis for developing prioritization measures to retain species assembly processes and in situ diversification along current climatic and geohistorical gradients.

"Plants that Remind Me of Home": Collecting, Plant Geography, and a Forgotten Expedition in the Darwinian Revolution.

In 1859, Harvard botanist AsaGray (1810-1888) published an essay of what he called "the abstract of Japan botany." In it, he applied Charles Darwin's evolutionary theory to explain why strong similarities could be found between the flora of Japan and that of eastern North America, which provoked his famous debate with Louis Agassiz (1807-1873) and initiated Gray's efforts to secure a place for Darwinian biology in the American sciences. Notably, although the Gray-Agassiz debate has become one of the most thoroughly studied scientific debates, historians of science remain unable to answer one critical question: How was Gray able to acquire specimens from Japan? Making use of previously unknown archival materials, this article scrutinizes the institutional, instrumental, financial, and military settings that enabled Gray's collector, Charles Wright (1811-1885), to travel to Japan, as well as examine Wright's collecting practices in Japan. I argue that it is necessary to examine Gray's diagnosis of Japan's flora and the subsequent debate about it from the viewpoint of field sciences. The field-centered approach not only unveils an array of historical significances that have been overshadowed by the analytical framework of the Darwinian revolution and the reception of Darwinism, but also places a seemingly domestic incident in a transnational context.

2011 Epidemiological Survey of Dermatomycoses in Japan

An epidemiological survey of dermatomycoses and their causative fungus flora in Japan for 2011 was conducted in accordance with methods and criteria of the past four surveys. The survey covered a total number of 36,052 outpatients who visited 12 dermatological clinics throughout Japan. The results were as follows. 1）Dermatophytosis was the most prevalent cutaneous fungal infection (2,980 cases) seen in these clinics, followed by candidiasis (378 cases) and then Malassezia infections (152 cases). 2）Among dermatophytoses, tinea pedis was the most frequent (1,930 cases : male, 980 ; female, 950), then in decreasing order, tinea unguium (780 cases : male, 409 ; female, 371), tinea corporis (203 cases : male, 132 ; female, 71), tinea cruris (112 cases : male, 86 ; female, 26), tinea manuum (43 cases : male, 25 ; female, 18), and tinea capitis including kerion (16 cases : male, 13 ; female, 3). 3）Tinea pedis and tinea unguium were seen to increase in the summer season and occur mostly among the aged population. Compared to the last survey, by clinical form, there was a marked decrease in dermatophytosis patients. 4）As the causative dermatophyte species, Trichophyton rubrum was the most frequently isolated at about 80 % among all dermatophyte infections excluding tinea capitis. T. mentagrophytes was about 10 %. Microsporum canis was isolated in five cases. M. gypseum was isolated in three cases, and Epidermophyton floccosum was isolated in only one case. T. tonsurans was isolated in 13 cases. 5）Cutaneous candidiasis was seen in 378 cases (305, male ; 537, female). Intertrigo (298 cases) was the most frequent clinical form, followed by diaporcandidiasis (79 cases), erosion interdigitalis (62 cases), genital candidiasis (46 cases). 6）Tinea versicolor was seen in 97 cases. Malassezia folliculitis was isolated in 55 cases.

Taxonomic review of the umbelliferous taxa Heracleum moellendorffii complex in Korea based on molecular phylogenies of nuclear ribosomal ITS sequences

Taxonomy of umbelliferous taxa Heracleum moellendorffii complex has been unclear in their species delimitation in the far-eastern Asian regions. In both Korea and China Heracleum moellendorffii was adopted for their description while H. sphondylium was chosen to describe Japanese Heracleum. From Genbank accessions, taxa collected from Kamtchatka and Promorskiy, Russia were defined as H. maximum, endemic taxon to North America. In this study, we reviewed the taxonomy of Heracleum moellendorffii complex in Korea and neighboring countries on the basis of molecular phylogenies derived from sequences of nuclear ribosomal DNA internal transcribed spacer (ITS) regions. From three Korean accessions of Heracleum investigated in this study, two types of ITS sequences were obtained; two accessions were related to Chinese H. moellendorffii var. moellendorffii and North American H. maximum without forming a clade while the other one was identical to accession from H. maximum from Primorskiy, Russia. In the other hand, Japanese H. moellendorffii (=H. sphondylium ssp. sphondylium var. nipponicum in the flora of Japan) was closely related to H. maximum accessions from Korea and Russia, not nested within the clade comprising several subspecies of H. sphondylium. In order to delimit species boundaries among putatively closely related Heracleum species in fareastern Asian countries, more samples and much more rapidly evolved DNA regions must be investigated with interpretation of morphological and anatomical features.

Macromitrium cavaleriei, a little known moss from China with four new synonyms (Musci: Orthotrichaceae)

Macromitrium cavaleriei Cardot & Thér. in Thér. is a little known Chinese moss of the family Orthotrichaceae. The species, which, forms dense mats with creeping stems, varies much in its branch leaf shape and in the laminal cell papillosity of the branch and perichaetial leaves. In the present paper, Macromitrium cavaleriei is re-evaluated taxonomically, including the new synonymizations of M. gebaueri Broth., M. sinense E. B. Bartram, M. syntrichophyllum Thér. & P. de la Varde, and M. syntrichophyllum var. longisetum Thér. & Reimers from China. The synonymizations extend the distribution of M. cavaleriei from Guizhou to 15 provinces and one municipality, mainly in the area to the South of the Yangtze River, Southwest China, and Taiwan. Additionally, M. cavaleriei is reported as new to the moss flora of Japan.

The correct interpretation and lectotypification of the name Cardamine fallax (Brassicaceae)

The name Cardamine fallax (O. E. Schulz) Nakai, based on Cardamine flexuosa subsp. fallax O. E. Schulz, is lectotypified by the specimen originating from Japan (Mama-mura, Shimosa) in accordance with the original description and with the current use of the name by the majority of Japanese and Korean authors. Contrary to the treatment in the recent editions of the Flora of China and Flora of Japan, hexaploid C. fallax is considered here as a taxon different from diploid C. parviflora L. The main morphological difference between these two species is in the shape of cauline leaves. Those of C. parviflora are pinnatisect (lower ones seldom pinnate), with oblanceolate to linear, entire or almost entire segments or leaflets, and those of C. fallax are pinnate, usually with petiolulate, lobate, pinnatipartite to pinnatisect leaflets. The distribution area of C. fallax includes Japan, Korea and Eastern China.

Commentary on Proposal (1669) to conserve the name Acanthopanax against Eleutherococcus (Araliaceae)

TAXONVolume 55, Issue 1 p. 217-218 Nomenclatures Commentary on Proposal (1669) to conserve the name Acanthopanax against Eleutherococcus (Araliaceae) David G. Frodin, David G. Frodin Chelsea Physic Garden, London; Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, U.K.Search for more papers by this author David G. Frodin, David G. Frodin Chelsea Physic Garden, London; Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, U.K.Search for more papers by this author First published: 01 February 2006 https://doi.org/10.2307/25065545AboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onFacebookTwitterLinkedInRedditWechat No abstract is available for this article. Volume55, Issue1February 2006Pages 217-218 RelatedInformation

Life history monographs of Japanese plants: A new series

Abstract Plant Species Biology will publish a continuing series of papers on the biology and life history characteristics of vascular plant species indigenous to, or well naturalized in, the flora of Japan. This paper sets forth the guidelines and format for contributors to this series. This new series attempts to establish a record as complete as possible concerning all aspects of the life history characteristics as well as significant biosystematic characteristics of the species under consideration. Keen attention will be given to species that are becoming very rare and endangered, particularly in lowland areas, aquatic habitats (e.g. rivers, ponds and wetlands), coastal habitats (e.g. sand dunes, salt marshes) and alpine zones (including serpentine and limestone habitats).

Materials for the fungus flora of Japan (57)

Two microfungi are described as new to Japan:Amaurascopsis reticulatus (Amauroascaceae, Ascomycetes), isolated from forest soil in Kamakura, has not been recorded since it was originally found and is characterized by yellow to orange-red ascomata with undifferentiated peridial hyphae and globose ascospores with contorted ridges appearing irregularly punctate-reticulate; andHobsonia mirabilis (helicosporous hyphomycete), isolated from the cut stem of a thistle in Hachijo-jima, is characterized by gelatinous sporodochia and hyaline, tortuously coiled conidia.

Materials for the fungus flora of Japan (53)

Two interesting ascomycetes are described as new to Japan:Ascotricha amesii (Xylariaceae), isolated from garden soil in Osaka; andAuxarthron reticulatum, isolated from forest soil in Tokyo. ADicyma anamorph is associated with the former species.

Materials for the fungus flora of Japan (51)

A discomycete in Sarcoscyphaceae is described and illustrated as new to Japan:Cookeina sulcipes (Berk.) Kuntze, found on decayed wood along the Aira River, Iriomote Island, Okinawa Pref., Japan.

On phytogeographical affinities of the forest floras between east China and Japan

The flora of the eastern China is the main part of Sino-Japanese floristic region. It shows from the analysis and comparison that the floristic relation of East China with Japan is closer than that with northeast China and Korea. The similarity indices of genera and species of seed plants in the two regions are very high, being 72.6% and 43.3% respectively. The structure and species composition of broad-leaved evergreen forests in the two regions are also similar, and there exist many corresponding communities, such as the forests of Castanopsis carlesii and C. sieboldii. Many plants in East China are conspecific with those in Japan, such as Cercidiphyllum japonicum, Magnolia sieboldii, Nandina domestica etc. Though the genera of Ginkgo, Liriodendron, Sassafras etc. existing now in China are extinct from Japan, their fossils have been discovered from the Tertiary strata in Japan. It seems to indicate that the phytogeographical affinities between East China and Japan are closer in ancient time than it is now, and both of the forest floras originated from the same flora. The flora in Japan did not evolve independently until it separated from Chinese continent and drifted northeastwards in the late period of the Tertiary.

Phytogeographical affinities of forest floras between China and Japan

The flora of eastern China is the main part of Sino-Japanese floristic region. It shows by the analysis and comparison that the floristic relations of Eastern China with Japan are closer than that of northeast China with Korea. The similarity indices of genera and species of seed plants in the two regions are very high, being 72.6% and 43.3% respectively. The structure and species composition of broad-leaved evergreen forests in the two regions are also similar, in which there exist the corresponding communities, such as the forests of Castanopsis carlesii, C. Sieboldii.. Many plants in Easter China are nonspecific with those in Japan, e. g, Cercidiphyllum japonicum, Magolia sieboldii, Nandina domestica etc.. Though the genera Ginkgo, Liriodendron, Sassafras etc. existing now in China are extinct from Japan, their fossils have been discovered from the Tertiary Strata in Japan. It seems to indicate that the phytogeographical affinities between Japan and E. China was closer in ancient time than it is now; and both of the forest floras originated from one same flora, The flora in Japan did not evolve independently until it separated from Chinese continent and drifted to northeast in the late period of the Tertiary.

New Infrageneric Taxa and Combinations in Chenopodium L. (Chenopodiaceae)

New Infrageneric Taxa and Combinations in Chenopodium L. (Chenopodiaceae)

Materials for the fungus flora of Japan (49)

Two interesting microfungi are described as new to Japan:Talaromyces galapagensis (anam.Penicillium galapagense), isolated from soil in Shizuoka; andPenicillium megasporum, isolated from marine sludge in Nagasaki. Some observations are recorded, particularly on ascomatal initials ofT. galapagensis, which are similar to those described forTalaromyces flavus.

Materials for the fungus flora of Japan (48)

A coelomycetePolymorphum quercinum, newly found on the branches ofFagus crenata in Japan, is described.