Flaring gate piers (FGPs) have been used to increase energy dissipation in stilling basins downstream of spillways. For projects with a low water head and large unit discharge together with a deep tailwater level, energy dissipation inside a conventional stilling basin is usually insufficient. This paper proposes a new partial flaring gate pier (partial FGP) scheme to intensify the energy dissipation inside the stilling basin. The results for the no FGP scheme, the conventional FGP scheme, and the partial FGP scheme were compared using a physical model study and numerical simulations. It was found that the partial FGP scheme (the alternation of flaring and no flaring gate piers in chambers) can contain the submerged hydraulic jump and high-speed water jet in the upstream region of the stilling basin. Thus, the water jet from the FGP chamber was forced to laterally diffuse, thereby intensifying the shear friction and turbulent kinetic energy and forming a vertical vortex from the bottom to the surface. Compared with the other two schemes, the flow pattern in the partial FGP scheme was improved significantly with much deeper air entrainment depth inside the stilling basin and much lower turbulent kinetic energy in the outgoing flow. The mean velocity of the outgoing flow also decreased by more than 20%. The common problems of secondary hydraulic jump outside the stilling basin were eliminated.