Five-membered Ring Research Articles

Mechanistical Study on Substrate-Controlled Highly Selective [2+2] and [2+3] Cycloaddition Reactions.

Polycyclic conjugated hydrocarbons have acquired increased interests recently because of their potential applications in electronic devices. On metal surfaces, the selective synthesis of four- and five-membered carbon rings remains challenging due to the presence of diverse reaction pathways. Here, utilizing the same precursor molecule, we successfully achieved substrate-controlled highly selective cycloaddition reactions towards four- and five-membered carbon rings. A 97% yield for four-membered carbon rings on Au(111), while a 96% yield towards five-membered carbon rings is achieved on Ag(111). The detailed topological structures of the reaction products are carefully examined by bond-resolving scanning tunneling microscopy (BR-STM) imaging with a CO functionalized tip. The underlying mechanism of the novel surface-directed reaction selectivity is elucidated by extensive density functional theory (DFT) calculations. Our study paves the way for high selective synthesis of polycyclic conjugated hydrocarbons with non-benzenoid rings.

Neural network potential-based molecular investigation of thermal decomposition mechanisms of ethylene and ammonia

This study developed neural network potentials (NNPs) specifically tailored for pure ethylene and ethylene-ammonia blended systems for the first time. The NNPs were trained on a dataset generated from density functional theory (DFT) calculations, combining the computational accuracy of DFT with a calculation speed comparable to reactive force field methods. The NNPs are employed in reactive molecular dynamics simulations to explore the thermal decomposition reaction mechanisms of ethylene and ammonia. The simulation results revealed that adding ammonia reduces the activation energy for ethylene decomposition, thereby accelerating ethylene consumption. Furthermore, the addition of ammonia uncovers a new reaction pathway for hydrogen radical consumption, which reduces the occurrence of H-abstraction reactions from ethylene by hydrogen radicals. The inhibition effect of ammonia addition on soot formation mainly acts in two aspects: on the one hand, ammonia decomposition products react with carbon-containing species, ultimately producing C1N products, thereby decreasing the carbon numbers involved in soot formation. This significantly reduces the concentrations of C5C9 molecules and key polycyclic aromatic hydrocarbons (PAHs) precursors like C2H2 and C3H3. On the other hand, ammonia promotes the ring-opening reactions of six-membered carbon rings at high-temperature conditions, thereby reducing the formation of PAHs precursors. The results show that with the addition of ammonia, six-membered carbon rings tend to convert into seven-membered carbon rings at lower temperatures, while at higher temperatures, they are more likely to transform into three- and five-membered carbon rings. These variations in the transformation of six-membered carbon rings may also affect soot formation. The insights gained from understanding these fundamental chemical reaction mechanisms can guide the development of ethylene-ammonia co-firing systems.

Enclathration of Saturated Five-Membered Rings by Tricyclic Fused Host Systems

Enclathration of Saturated Five-Membered Rings by Tricyclic Fused Host Systems

Gold nanotube self-assemblage from tubular W2@Au16 cluster.

While the pure Au16 cluster tends to exist in a 3D cage shape, the doubly doped W2@Au16 is found to prefer a tubular form containing three five-membered Au rings stabilized by the W2 dimer vertically placed inside a tube-like Au16 framework. Formation of self-assembled nanotubes containing five-membered Au rings from the tube-like W2@Au16 cluster is also feasible, and such a tubular structure constitutes an ideal building block for generating gold-assembled nanotubes, providing us with a useful approach for designing some novel tailor-made materials with interesting optoelectronic properties. Density functional theory (DFT) calculations using the TPSS functional and the cc-pVDZ-PP basis set are employed to determine some noticeable effects of the doping of the W2 dimer on the structure, stability, and optical properties of pure Au16 gold clusters.

Ethyl (2RS,3SR,4RS)-1-ethyl-2-(furan-2-yl)-4-hydroxy-5-oxopyrrolidine-3-carboxylate

The title racemic oxopyrrolidine compound, C13H17NO5, contains three stereogenic centres and crystallizes with two molecules in the asymmetric unit. The five-membered pyrrolidine rings in both molecules exhibit envelope conformations. The N-ethyl group of one of the molecules is disordered over two sets of sites in a 0.836 (4):0.164 (4) ratio. In the crystal, both molecules form inversion dimers through pairwise O—H...O hydrogen bonds, generating R 2 2(10) loops, which are linked into a three-dimensional network by weak C—H...O hydrogen bonds.

Ka-Band Rotational Spectroscopy of Succinimide and N-Chlorosuccinimide.

Succinimide and its derivatives are cyclic five-membered rings that appear in a variety of natural products and are widely used in organic synthesis. From a structural standpoint, succinimide contains an NH group in the ring which interacts with two adjacent carbonyl groups, pushing the ring structure toward planarity at the expense of increasing ring strain and eclipsing interactions among the out-of-plane hydrogen atoms in the two CH2 groups. Previous quantum chemical calculations at different levels of theory have predicted both a nonplanar C2 structure and a planar C2v structure, the latter of which is the most consistent with gas-phase electron diffraction measurements. Here, we report the pure rotational spectra of succinimide and N-chlorosuccinimide in the 26.5-40.0 GHz range using chirped-pulse Fourier transform microwave spectroscopy, supported by coupled cluster and density functional theory quantum chemical calculations. The spectra were fit to Watson's A-reduced effective Hamiltonian, including both 35Cl and 37Cl isotopologues of N-chlorosuccinimide as well as the N and Cl quadrupole hyperfine interactions. On the basis of the agreement with quantum chemical calculations and the measured inertial defects, we find that the rotational spectra are consistent with a planar ring structure, with a maximum out-of-plane angle of ≤5°.

π-Complexes Derived from Non-classical Diboriranes: Side-on vs. End-on Carbonylative Ring Expansion.

Unlike cyclopropanes, the analogous B2C species (diboriranes) tend to adopt non-classical Hückel-aromatic structures with bridging moieties R between the boron atoms. The coordination of the thus generated cyclic 2e- π-system to transition metals is completely unexplored. We here report that complexation of non-classical diboriranes cyclo-μ-RB2Dur2CPh (R=H, SnMe3; Dur=2,3,5,6-tetramethylphenyl) to Fe(CO)3 fragments allows for the carbonylative ring expansion of the B2C ring to either four- or five-membered rings depending on the nature of the BRB 3-center-2-electron bond (3c2e): The H-bridged diborirane (R=H) initially reacts with Fe2(CO)9 to the allylic π-complex with an agostic BH/Fe interaction. Subsequent formal hydroboration of CO from excess Fe2(CO)9 results in the side-on ring expansion under formation of a five-membered B2C2O ring, coordinated to the Fe(CO)3 moiety. In contrast, in case of the stannyl-bridged diborirane (R=SnMe3) under the same conditions, CO is added end-on to the B-B bond with the carbon terminus formally inserting into the B2Sn 3c2e-bond. The two carbonylative ring expansion products can also be described as nido and closo clusters, respectively, according to the Wade-Mingos rules.

Madecassic acid analogues with a five-membered A-ring and their cytotoxic activity

The structural modification of madecassic acid focused on the contraction of the six-membered A-ring to a five-membered ring, combined with the dehydration of 6-OH to form a new double bond and formation of the esterification or amidation at C-28. The synthesised structures were identified based on the analysis of their NMR and EIS-MS data. Eighteen new madecassic acid analogues were tested in vitro for their cytotoxicity against three cancer cell lines, including human mouth carcinoma (KB), human hepatocellular carcinoma (HepG2), and human lung carcinoma (A549) using the MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) assay. Among them, compounds 5 and 12 exhibited potent and selective cytotoxic activity in KB and HepG2 cell lines, with IC50 values ranging from 3.57 to 6.32 µM. The results also indicated that analogues with a 5-membered A-ring containing an α,β-unsaturated aldehyde esterified at C-23 showed a decrease in their cytotoxic activity compared to precursors in the tested cancer cells.

Synthesis and Stability of Biomolecules in C-H-O-N Fluids under Earth's Upper Mantle Conditions.

How life started on Earth is an unsolved mystery. There are various hypotheses for the location ranging from outer space to the seafloor, subseafloor, or potentially deeper. Here, we applied extensive ab initio molecular dynamics simulations to study chemical reactions between NH3, H2O, H2, and CO at pressures (P) and temperatures (T) approximating the conditions of Earth's upper mantle (i.e., 10-13 GPa, 1000-1400 K). Contrary to the previous assumptions that large organic molecules might readily disintegrate in aqueous solutions at extreme P-T conditions, we found that many organic compounds formed without any catalysts and persisted in C-H-O-N fluids under these extreme conditions, including glycine, ribose, urea, and uracil-like molecules. Particularly, our free-energy calculations showed that the C-N bond is thermodynamically stable at 10 GPa and 1400 K. Moreover, while the pyranose (six-membered ring) form of ribose is more stable than the furanose (five-membered ring) form at ambient conditions, we found that the formation of the five-membered-ring form of ribose is thermodynamically more favored at extreme conditions, which is consistent with the exclusive incorporation of β-d-ribofuranose in RNA. We have uncovered a previously unexplored pathway through which the crucial biomolecules could be abiotically synthesized from geofluids in the deep interior of Earth and other planets, and these formed biomolecules could potentially contribute to the early stage of the emergence of life.

Three multifunctional difluoroboron fluorescent dyes with five member N-heterocyclic ring for mechanofluorochromic behaviors, the ink-free writing and latent fingerprints imaging

To further advance the development of multifunctional fluorescent dyes, three difluoroboron compounds (F-1, F-2, and F-3) containing five-membered N-heterocyclic ring moieties that act as the electron-withdrawing units were synthesized. It was observed that compound F-1, which incorporated a 1,2,4-triazole segment, and compound F-3 with 1,2,3-triazole portion exhibited aggregation-induced emission activities suitable for latent fingerprints imaging. In contrast, compound F-2 featuring a pyrazole unit demonstrated an aggregation-caused quenching phenomenon. Additionally, all three compounds displayed mechanofluorochromic behaviors. Specifically, the emission spectra of compound F-1 in the solid state experienced only a slight shift of approximately 5 nm upon grinding, however, compound F-2 underwent a red shift from 475 to 501 nm while compound F-3 shifted from 482 to 507 nm. Furthermore, both compounds F-2 and F-3 could be utilized in ink-free writing applications. Notably, the safety paper prepared using compound F-2 was designed for single-use due to its irreversible mechanofluorochromic behavior, conversely, the safety paper derived from compound F-3 was rewritable owing to its reversible mechanofluorochromic behavior. It provided a foundation for exploration the application of multifunctional difluoroboron compounds with 1,2,3-triazole moiety.

Enhancement of 2-hydroxy-3-naphthyl hydroxamic acid adsorption on bastnaesite and monazite surfaces using H2O2 pre-oxidation for improved flotation process

Rare earth elements have been widely applied in various sectors. Bastnaesite and monazite are crucial rare earth minerals, and flotation is a vital technique for recovering fine-grained rare earth minerals and separating them from associated gangue minerals such as fluorite and apatite. Flotation collectors play a key role in selectively adsorbing valuable minerals, enhancing their surface hydrophobicity, which has prompted considerable research interest. However, the interaction between minerals and reagents relies on the reactivity and selectivity of the reagent groups, as well as the reactive properties of the surface atoms of the minerals. This study proposes the use of H2O2 oxidation to enhance the flotation process of rare earth minerals. The flotation experiments demonstrated that pre-adding H2O2 before introducing the flotation collector significantly improved the grade and recovery of rare earth concentrates. The adsorption mechanisms of 2-hydroxy-3-naphthyl hydroxamic acid collector on rare earth mineral surfaces before and after H2O2 pre-oxidation were studied. The 2-hydroxy-3-naphthyl hydroxamic acid interacts with Ce3+ on the surface of unoxidized rare earth minerals, forming chelate compounds with five-membered ring structures. The H2O2 exhibited potent oxidizing properties and oxidized the Ce3+ on the bastnaesite and monazite surfaces to more stable Ce4+, which demonstrated stronger binding capability with hydroxamic acid.

Synthesis, Antimicrobial and Antioxidant Activity of Some New Pyrazolines Containing Azo Linkages.

Pyrazolines and azo-pyrazolines are influential groups of heterocyclic compounds with two nitrogen atoms inside the five-membered ring. They play an important role in a wide range of biological processes, such as antifungal, antioxidant, antimalarial and other antimicrobial activities. The main objective of this study is to synthesize some new heterocyclic compounds with antioxidant and antimicrobial activity Methods: One-pot three components and traditional synthesis of new azo-pyrazoline compounds were achieved in this work. The preparation process has been started by diazotizing 4-(6-methylbenzothiazol-2-yl) benzamine and its coupling reaction with 4-hydroxy acetophenone producing azo-acetophenone, followed by benzylation with benzyl chloride to form the starting material, azo-benzyloxy acetophenone. A series of substituted benzaldehydes were reacted with the latter compound via one pot and classical methods, forming new chalcones containing azo linkages and benzyloxy moieties, which were then converted into new target azo-pyrazoline derivatives. The structures of the synthesized compounds were confirmed by spectroscopic techniques using FT-IR, 1H-NMR, 13C-NMR, and 13C- DEPT- 135 spectra. Finally, the synthesized compounds were screened for their antioxidant and antimicrobial activities against Staphylococcus aureus and Escherichia coli. Overall, the one-pot three-component synthesis of pyrazoline compounds generally provides advantages in terms of efficiency, simplicity, and time-consumption compared to classical synthesis methods. Hence, the study advocates the one-pot method because it eliminates the tedious process of making chalcones, which takes time, materials, and unnecessary effort. Therefore, this is the most convenient and effective approach to green chemistry.

Allylic Epoxides Increase the Strain Energy of Cyclic Olefin Monomers for Ring-Opening Metathesis Polymerization.

Ring-opening metathesis polymerization (ROMP) is an effective method for synthesizing functional polymers, but since the technique typically relies on high ring strain cyclic olefins, the most common monomers are norbornene derivatives. The reliance on one class of monomer limits the obtainable properties of ROMP polymers. In this work, we investigate new bicyclic monomers synthesized via epoxidation of commercial dienes. DFT estimates of these monomers' ring strains suggests a significant increase in strain for cyclic olefins containing allylic epoxides. We found that the eight-membered (3,4-COO) and five-membered (CPO) cyclic olefins were particularly effective for ROMP. CPO was of especially intriguing due to its excellent polymerizability when compared to the limited reactivity of other five-membered rings. Unlike polynorbornenes, the resulting polymers of both monomers displayed glass transition temperatures well below room temperature. Interestingly, poly(3,4-COO) showed both high stereo- and regioregularity while poly(CPO) showed little regularity. Both polymers could be readily modified via post-polymerization ring-opening of the reactive allylic epoxides. With a high epoxide density in poly(CPO), CPO is an exciting new ROMP monomer that is easily synthesized, can be polymerized to high conversion at room temperature, and may be facilely modified to yield a wide range of functional materials.

Single-Site Pd Regulated by π-π Stacking for High-Selectivity Cyclopropanation Reaction.

Cyclopropane-based high-energy fuels possess high intramolecular energy and density, and their precise synthesis is a critical challenge. However, owing to the highest strain in the cyclopropane structure (compared to other four- or five-membered rings, etc.), metal-carbene intermediates form with difficulty, resulting in poor catalytic selectivity for its synthesis. Herein, through rational design of π-π stacking between the Pd organic complex and graphene, we report a single-site Pd catalyst for precise synthesis of multicyclopropane-based high-energy fuels. It is discovered that π-π stacking enhanced the electrophilicity of Pd through a weak metal-support interaction, thus promoting the formation of Pd═C carbene active intermediates. Meanwhile, the adsorption between the active centers and intermediates was enhanced via π-π stacking. These two respects led to almost twice selectivity for cyclopropanation reaction up to 80.5% as that without π-π stacking. This work provides an effective strategy of π-π noncovalent interactions for regulating C-C coupling reaction selectivity.

A Crystalline Mesoionic Diazasilole Featuring Low-Valent Silicon.

A 1,4,2-diazasilole containing a low-valent silicon atom has been synthesized employing a bulky imino N-heterocyclic carbene ligand. This molecular structure is characterized by a mesoionic C2N2Si five-membered ring, notable for its delocalized π electrons, intrinsic charge-separated zwitterionic properties, and a distinctly nucleophilic silicon center, culminating in 6π aromaticity. This compound manifests either mesoionic silylene or silylone characteristics upon coordination with transition metals. Demonstrating extraordinary versatility, this compound engages in diverse reactions such as coordination with iron or iridium, oxidation by S8, intramolecular ring saturation under the coordination influence of iridium, silicon atom transfer facilitated by Ph2Se2, ring contraction induced by Ph2Te2, and skeletal rearrangement triggered by Et3N•HCl. These reactions culminate in the formation of a variety of unprecedented silicon-based heterocycles, which are typically formidable to achieve using conventional methods. This study unveils previously unexplored facets of low-valent 1,4,2-diazasilole, positioning it as a promising foundational building block for future innovations in unique silicon compounds.

Stable, aromatic, and electrophilic azepinium ions: Design using quantum chemical methods.

Cyclic nitrenium ions containing five-membered and six-membered rings are available, however, the seven-membered cyclic nitrenium ions (azepinium ions) are rare. The chemistry of these species is related to their stability originating from the aromaticity due to 6π electrons. Very few theoretical and experimental studies have been conducted on the azepinium ions. Related clozapine and olanzapine cations (diazepinium ions) were observed during drug metabolism studies. In this work, quantum chemical analysis has been carried out to estimate the stability, aromaticity, and electrophilicity of several derivatives of azepinium ions. A few of the designed azepinium ions carry ΔES-T values in the range of 50 kcal/mol favoring singlet state; π donating groups at the 2nd position increase the singlet-triplet energy differences. Most of the substituents reduce the NICS(1) values compared to the parent system. Ring fusion with heterocyclic five-membered rings generally increases the aromaticity and the stability of the azepinium ion ring systems. The electrophilicity parameters estimated in terms of HIA, FIA, and ω values indicate that it is possible to fine-tune the chemical properties of azepinium ions with appropriate modulation.

N-Carbazolyl π-Radical and Its Antiaromatic Nitrenium Ion: A Threshold Photoelectron Spectroscopic Study.

Understanding the structure and properties of heterocyclic radicals and their cations is crucial for elucidating reaction mechanisms as they serve as versatile synthetic intermediates. In this work, the N-carbazolyl radical 1 was generated via pyrolysis and characterized using photoion mass-selected threshold photoelectron spectroscopy coupled with tunable vacuum-ultraviolet synchrotron radiation. The N-centered radical 1 is classified as a π-radical (2B1), with the unpaired electron found to be delocalized over the central five-membered ring of the carbazole. Adiabatic ionization energies corresponding to the transition from radical 1 to its singlet 1+(1A1) and triplet 1+(3B2) cations were determined to be 7.70 ± 0.03 and 8.14 ± 0.03 eV, respectively. The antiaromatic nitrenium ion 1+ exhibits a singlet ground state with an experimental singlet-triplet energy gap (ΔES-T) of -0.44 eV (10.1 kcal/mol), in very good agreement with theory. N-centered radicals are found to have a higher ionization energy than their C-centered analogues due to stabilization of the singly occupied molecular orbital.

Rational screening of metal single-atom-doped ZSM-5 to promote ring-opening cracking of cycloalkanes to light olefins

The ring-opening cracking of cycloalkanes to light olefins poses a formidable challenge due to the sluggish activation of the C–C bond. In this study, we realize the rational screening of various single metal doped M−ZSM−5 catalysts (M = Mn, Co, Ni, Cu, Zn, Zr, Ru, Rh, Pd, Ag, Pt) to promote the ring-opening cracking of cycloalkanes to light olefins. Our calculation results show that methyl cyclopentane, a model compound of cycloalkanes, tends to adsorb in the form of a “half-chair” configuration in the intersecting channels of the M−ZSM−5, which is caused by the drastic distortion of the five-membered ring, accompanied by large changes in the bond angles. Based on the host–guest interaction between the active site and hydrocarbon in ring-opening cleavage, we reveal that the binding energies of metals to H and C can respectively quantify the metal’s ability to activate C–H and C–C bonds in cycloalkanes. By solving the microkinetic model, we plot activity-selectivity TOF volcano diagrams, where Mn, Ru, Rh-ZSM-5 within the EH range of −2.5 to −3.5 eV and the EC range of −6 to −8 eV can efficiently induce the ring-opening reaction of cycloalkanes without excessive dehydrogenation leading to aromatic hydrocarbon formation. The calculation shows good agreement with catalytic experimental tests and in situ DRIFT spectra results, providing a series of potential candidate catalysts for the ring-opening cracking of cycloalkane-rich diesel fuel.

Enhancing Aromaticity of Alkenylbenzenes May Decrease Their Metabolic Activation and Reduce Their Potential Cytotoxicity: Lessons Learnt from the Investigation of Myristicin and Elemicin.

Metabolic activation studies of lead compounds are a crucial step in drug development and offer a key consideration during rational drug design. Myristicin (MRS) and elemicin (ELM), natural products belonging to alkenylbenzenes, share the backbone of 1-allyl-3-methoxybenzene. The backbone fuses with a methylenedioxy five-membered ring in MRS, while ELM is connected with two adjacent methoxy groups. ELM displayed powerful ability to induce cytotoxicity in cultured primary hepatocytes relative to MRS. Additionally, ELM exhibited superior efficiency in metabolic activation by CYP3A4, resulting in the formation of reactive metabolites carbonium ion, epoxides, and α,β-unsaturated ketone. Quantum chemical calculation and molecular dynamic studies revealed that the fused methylenedioxy 5-membered ring enhances the aromaticity of MRS, which affects the interaction between the allyl side chain and the heme for metabolic activation by the π-π stacking interaction with the aromatic amino acid residues of the host enzyme.

π-Extended 4,5-Fused Bis-Fluorene: Highly Open-Shell Compounds and their Cationic Tetrathiafulvalene Derivatives.

The synthesis of diradical organic compounds has garnered significant attention due to their thermally accessible spin inversion and optoelectronic properties. Yet, preparing such stable structures with high open-shell behavior remains challenging. Herein, we report the synthesis and properties of four π-extended, fused fluorene derivatives with high diradical character, taking advantage of a molecular design where the closed-shell does not include any Clar sextet, comparatively to a maximum of 5 in the corresponding open-shell state. This led to an unusual open-shell triplet ground state with an outstanding singlet-triplet energy difference (ΔEST) of ca. 19 kcal/mol, one of the highest values reported to date for an all-carbon conjugated scaffold. Incorporation of dithiafulvene units at each end of the molecule (at the five-membered rings) furnishes extended tetrathiafulvalenes (TTFs) undergoing reversible oxidations to the radical cation and diradical dication. The various pro-aromatic structures presented herein show highly localized spin density and a limited conjugation due to the confined π-electrons in the aromatic cycles, as supported by 1H NMR, UV/Visible, EPR spectroscopy and DFT calculations.