Agricultural Managed Aquifer Recharge (AgMAR) uses agricultural lands and floodwater to enhance groundwater recharge, but its effectiveness can be hindered by heavy metals like cadmium (Cd), which pose risks to groundwater quality. Cd is particularly concerning due to its high mobility and persistence in the environment. This study investigates Cd's fate and transport in agricultural regions during MAR, focusing on sandy loam soils through batch and column experiments. Equilibrium and kinetic batch studies were conducted under varying Cd concentrations and exposure times to quantify the adsorption capacity and rate. HYDRUS-2D was used to simulate Cd's transport in soil under various ponding depths and Cd concentrations. Results showed a maximum Cd adsorption capacity of 439.58 mg/kg, with the Freundlich isotherm providing a better fit (R2 = 0.98) and indicating heterogeneous adsorption sites (n = 0.389). The kinetic experiment indicated chemisorption as the predominant mechanism, with an equilibrium adsorption capacity of 236.49 mg/kg. The pseudo-second-order kinetic model (rate constant 0.0016 h⁻1, R2 = 0.99) suggested that adsorption kinetics are influenced by Cd concentration and available adsorption sites. The column experimental findings supported by HYDRUS-2D modeling successfully explained the fate and transport of Cd within the soil columns. The model fitted parameter values for Freundlich adsorption isotherm coefficient (KF), linearity factor (Nu), and kinetic rate coefficient are (α) 47.37 L/kg, 0.00389 cm³/ppm and 0.0029 min⁻1, respectively. Modeling scenarios further elucidated the transport dynamics of Cd under simulated AgMAR conditions. Modeling scenarios indicated that with constant ponding of 5 cm over a year, Cd at 20 and 40 ppb concentrations in floodwater could potentially migrate below root zone systems. This study highlights the critical role of understanding Cd fate and transport in optimizing AgMAR systems and reducing Cd pollution risks, providing valuable insights for developing effective monitoring and management strategies.