Valuable Fishery Research Articles

An explainable few-shot learning model for the directed evolution of antimicrobial peptides

Due to the persistent threat of antibiotic resistance posed by Gram-negative pathogens, the discovery of new antimicrobial agents is of critical importance. In this study, we employed deep learning-guided directed evolution to explore the chemical space of antimicrobial peptides (AMPs), which present promising alternatives to traditional small-molecule antibiotics. Utilizing a fine-tuned protein language model tailored for small dataset learning, we achieved structural modifications of the lipopolysaccharide-binding domain (LBD) derived from Marsupenaeus japonicus, a prawn species of considerable value in aquaculture and commercial fisheries. The engineered LBDs demonstrated exceptional activity against a range of Gram-negative pathogens. Drawing inspiration from evolutionary principles, we elucidated the bactericidal mechanism through molecular dynamics simulations and mapped the directed evolution pathways using a ladderpath framework. This work highlights the efficacy of explainable few-shot learning in the rational design of AMPs through directed evolution.

RSNC-YOLO: A Deep-Learning-Based Method for Automatic Fine-Grained Tuna Recognition in Complex Environments

Tuna accounts for 20% of the output value of global marine capture fisheries, and it plays a crucial role in maintaining ecosystem stability, ensuring global food security, and supporting economic stability. However, improper management has led to significant overfishing, resulting in a sharp decline in tuna populations. For sustainable tuna fishing, it is essential to accurately identify the species of tuna caught and to count their numbers, as these data are the foundation for setting scientific catch quotas. The traditional manual identification method suffers from several limitations and is prone to errors during prolonged operations, especially due to factors like fatigue, high-intensity workloads, or adverse weather conditions, which ultimately compromise its accuracy. Furthermore, the lack of transparency in the manual process may lead to intentional underreporting, which undermines the integrity of fisheries’ data. In contrast, an intelligent, real-time identification system can reduce the need for human labor, assist in more accurate identification, and enhance transparency in fisheries’ management. This system not only provides reliable data for refined management but also enables fisheries’ authorities to dynamically adjust fishing strategies in real time, issue timely warnings when catch limits are approached or exceeded, and prevent overfishing, thus ultimately contributing to sustainable tuna management. In light of this need, this article proposes the RSNC-YOLO algorithm, an intelligent model designed for recognizing tuna in complex scenarios on fishing vessels. Based on YOLOv8s-seg, RSNC-YOLO integrates Reparameterized C3 (RepC3), Selective Channel Down-sampling (SCDown), a Normalization-based Attention Module (NAM), and C2f-DCNv3-DLKA modules. By utilizing a subset of images selected from the Fishnet Open Image Database, the model achieves a 2.7% improvement in mAP@0.5 and a 0.7% improvement in mAP@0.5:0.95. Additionally, the number of parameters is reduced by approximately 30%, and the model’s weight size is reduced by 9.6 MB, while maintaining an inference speed comparable to that of YOLOv8s-seg.

Spatio-temporal analysis of potential factors explaining fluctuations in population size of Spisula subtruncata in the Dutch North Sea

Bivalves play a key role in coastal ecosystems by supporting food web, modifying habitats, and their economic value for fisheries. Many bivalve species are under pressure, showing large variations in population sizes and distributions, with climate change and human activities considered as important drivers. The Dutch North Sea hosts high densities of bivalve species, dominated by the cut trough shell Spisula subtruncata, with strong interannual variations and a patchy distribution. To explore the causes of this variation, data of an extensive long-term spatial benthic monitoring program (1995-2021) was analysed using a Bayesian spatio-temporal hurdle model. We considered indicators related to human activities, biological processes, climate change and habitat preference as explanatory variables for the observed long-term temporal and spatial variations. Results revealed that medium sediment grain size was key determinant of S. subtruncata occurrence and density. Increasing sea water temperatures during winter and the post-settlement phase positively affected annual population densities, while strong north-westerly winds led to lower densities. These climate change related factors had an overall positive effect on this species in the region. Human activities like shellfish dredging and sand nourishment had no measurable impact. However, shrimp and flatfish beam trawling overlapped with S. subtruncata occurrence and were negatively related to densities, suggesting higher beam trawling intensity in these areas may negatively impacts densities. Overall, the effects were stronger at medium to finer sediments where the highest densities occurred, indicating a strong habitat-dependent effect. Despite identifying multiple drivers, unexplained annual variation suggests other not included factors like predation pressure, also play a role. More detailed studies on the combined effects of climate change-driven environmental stressors and human activities are needed to fully understand the population dynamics. This knowledge is essential for developing more adequate fisheries and coastal management strategies to sustain biodiversity.

Effects of turmeric extracts (Curcuma domestica) on the quality of octopus (Octopus sp.) crackers

Although octopus is an economically valuable fishery commodity, it is underutilized with some popular processes such as boiling, frying and salting. The octopus-based product development of octopus can be extended through preservation using natural preservatives including turmeric extract. The use of turmeric water extract is expected to be an alternative preservative as well as a seasoning in the production of octopus crackers. The purpose of this study was to determine the best formulation of turmeric extracts (Curcuma sp.) on the quality of octopus crackers (Octopus sp.). The cracker’s formula was added with different levels of turmeric extracts as follows: K.0 (no turmeric extract), K.1 (3%), K.2 (6%), K.3 (9%). The parameters studied were organoleptic quality (appearance, odor, taste and texture) and TPC (Total Plate Count). The results showed that the best quality of octopus crackers on organoleptic parameters was at a concentration of 3%, resulting in appearance (7.2703), odor (7.316), taste (8.03), and texture (8.2802), while the score for the shape reached 9. TPC test at sample with turmeric extract of 9% was 2.7 x 102.

Growth Patterns of Small Pelagic Fish in West Africa

Small pelagic fishes play important ecological roles in marine ecosystems, constitute some of the most economically valuable fisheries resources, and play a vital role in West African food security. Often living in upwelling regions, these species appear to have developed mechanisms to cope with environmental variability, such as opportunistic reproductive tactics, enhancing their growth performance, or increasing their egg production by following the more predictable system attributes of seasonal cycles. To test this hypothesis, we investigated size-dependent patterns of the two growth mechanisms (i.e., growth rate) of two West African small pelagic populations (Ethmalosa fimbriata and Sardinella maderensis) in upwelling environments. These results were discussed with other areas in African tropical Atlantic waters. The monthly mean length of both species showed a large variation over the study period. Based on the fish length-frequency data and a coastal upwelling index, we found that the growth peaks of the species tended to occur during the most intense periods of upwelling (March–April). This study showed a significant decrease in size compared with other species found in other regions. It demonstrates how the geographical distribution of the same species, together with location-specific variation in temperature and food, can combine to determine local and regional growth responses in pelagic fish. Changes in growth rate may be an adaptive tactic in response to environmental change, as well as phenotypic plasticity in fish. This knowledge is essential to predict future changes in fish productivity and distribution vs. climate and to provide effective advice for ecosystem-based management.

Local Ecological Knowledge as a Conservation Tool for Identifying Threats to the Pacific Goliath Grouper (Epinephelus quinquefasciatus) in Panama

ABSTRACTThe Pacific goliath grouper, Epinephelus quinquefasciatus, is the largest reef fish of the tropical Eastern Pacific. The IUCN categorizes it as Data Deficient because of the lack of population data and the risk posed by fishing. Using fishers' local ecological knowledge, we assessed Pacific goliath grouper historical catch trends along Panama's Pacific coast. Handline and speargun catches showed significant declines in the average weight of Pacific goliath grouper landed from 1958 to 2018. Market demand and environmental degradation were identified as primary drivers of the Pacific goliath grouper perceived decline. Local ecological knowledge demonstrated that valuable fisheries information can be derived and used to inform species' population trends.

INDONESIAN FISHERIES AND SPICES COMMODITIES IN THE UNITED STATES AND THE EUROPEAN UNION: RSCA AND URR ANALYSIS

Although Indonesia has potential in fisheries and spice commodities, Indonesia also faces challenges where food commodities including fisheries and Indonesian spices often experience rejection, especially from the United States and the European Union. On the other hand, with its potential, Indonesian fisheries and spices products are expected to have comparative advantages that result in improved quality of goods and services so as to provide higher competitiveness in international trade. This study aims to determine how the competitiveness and trade conditions of fishery commodities and spices from Indonesia to the United States and the European Union from 2015-2022. The analytical tools used in this study are Revelaed Symetric Comparative Advantage (RSCA) and Trade Specialization index (ISP) to analyze competitiveness while to analyze the reasons for rejection and its relation to the food quality of these commodities the Unit Rejection Rate (URR) analysis is used. From the research results, it was found that all Indonesian fishery and spice products traded to the United States and the European Union have a comparative advantage both in 2015 and in 2022 because they have an RSCA score above 0. While the URR value of Indonesian fishery and spice commodities to the United States and the European Union has also decreased, which means that the number of rejections is decreasing, and the quality of food quality is increasing.

Oyster reefs as habitat for aquatic macrofauna in a Gulf of Mexico estuary: biotic complexity at spatial, ecological, and demographic scales

Oysters are important marine foundation species across the world, particularly in estuaries of the Gulf of Mexico. One important function of oysters in estuaries is the provision of 3-dimensional habitat that is used by a wide range of species. In this study, the biotic diversity of mid-bay intertidal oyster reefs found in a Gulf of Mexico estuary was examined at nested ecological and demographic scales. Fishery-independent data collections made in East Matagorda Bay, Texas, USA, were used to compare community structure and diversity at mid-bay reefs to undifferentiated shoreline habitats. Despite similar diversity metrics, there were differences in community structure that were driven by differences in spatial habitat use by several common species. Below the community scale, demographic differences in spotted seatrout Cynoscion nebulosus habitat use were observed, with smaller and younger individuals found along reefs, and larger and older individuals found along shorelines. This finding was more pronounced for male spotted seatrout in the spring. The observed spatial habitat use patterns at nested ecological scales (community, inter-species, intra-species) highlight the importance of oyster reefs for maintaining diversity in Gulf of Mexico estuaries, and more broadly support the notion that heterogeneity in localized habitats drives biotic diversity at the estuary scale. Conservation of oyster reefs as critical habitat should be considered along with conservation of oysters themselves when balancing the ecological value of oysters against the commercial value of oyster fisheries.

Shifts in habitat use and demography of American lobsters in coastal Maine (USA) over the past quarter century

Some species are so linked to specific environments that their habitat association almost becomes a species-defining character and is used by managers and policymakers to direct their conservation. The American lobster Homarus americanus is among the most valuable fisheries species in North America and among the best studied benthic marine invertebrates in the world. Its populations and habitats have been studied and detailed in publications for over 35 yr. This lobster species was known to dwell in shelters, and their populations had historically been concentrated in shelter-providing boulder habitat. Our study revisited 20 long-term monitored sites at 10 m depth along more than 320 km of the Gulf of Maine. Surprisingly, we recorded fundamental changes in lobster abundance, habitat use, and distribution. Specifically, lobster population densities declined overall and occupancy in boulder habitats declined 60%, while densities on featureless ledge and sediment habitats increased 633 and 280%, respectively, from 2000 to 2019. Lobster rock shelter occupancy declined in recent years, but average body size increased, due in part to declines in smaller size classes. These demographic changes may result from both reduced recruitment and intraspecific competition resulting from the lower population densities. Habitat changes at our monitored sites included declines in kelp abundance, increases in diminutive algal turfs, and nearly 3°C warming of benthic water temperature in July (1995-2021), some of which may have contributed indirectly to those shifts. While these changes in shallow water habitat and demography have implications for the lobster fishery and stock assessments, it also illustrates previously undescribed behavioral plasticity.

Estimating the fishing rate for maximum nutritional yield (FMNY) optimizes fish production for human health

Abstract Fisheries management is largely based on the principle of achieving the maximum sustainable yield (MSY) with little regard for nutritional value. Management strategies maximizing nutrients rather than yield, however, may provide a smarter contribution to global food and nutrition security. Here, we present a novel fisheries management strategy: fishing at maximum nutritional yield (FMNY), the exploitation rate at which essential nutrients are maximized. Combining top-down population modelling approaches with bottom-up nutrient compositional analysis, we compared nutrient yields across seasons for Europe’s most valuable fishery (Atlantic mackerel, Scomber scombrus). FMNY estimates differed between nutrients, but were equal to, or lower than, FMSY. An autumn fishery provided higher amounts of lipids, omega-3 fatty acids, and protein, whereas vitamin D3, and calcium were maximized in winter. Aligning national fisheries policies and nutrition objectives is paramount to realising the potential of seafood in building healthier food systems. Developing novel fisheries management strategies, such as FMNY, where fisheries are optimised for human nutrition will, therefore, contribute to nutrient sustainability and help improve human health and diets.

Forecasting the Total Output Value of Agriculture, Forestry, Animal Husbandry, and Fishery in Various Provinces of China via NPP-VIIRS Nighttime Light Data

Forecasting the Total Output Value of Agriculture, Forestry, Animal Husbandry, and Fishery in Various Provinces of China via NPP-VIIRS Nighttime Light Data

Quantile Regression Illuminates the Heterogeneous Effect of Water Quality on Phytoplankton in Lake Taihu, China

Lake Taihu, a subtropical shallow lake in the Yangtze River Basin, is the third-largest freshwater lake in China. It serves not only as a crucial source of drinking water and an ecological resource but also holds significant economic, tourism, and fisheries value. Phytoplankton, a vital component of aquatic ecosystems, plays a critical role in nutrient cycling and maintaining water structure. Its community composition and concentration reflect changes in the aquatic environment, making it an important biological indicator for monitoring ecological conditions. Understanding the impact of water quality on phytoplankton is essential for maintaining ecological balance and ensuring the sustainable use of water resources. This paper focuses on Lake Taihu, with water samples collected in February, May, August, and November from 2011 to 2019. Using quantile regression, a robust statistical analysis tool, the study investigates the heterogeneous effects of water quality on phytoplankton and seasonal variations. The results indicate significant seasonal differences in water quality in Lake Taihu, which substantially influence phytoplankton, showing weakly alkaline characteristics. When phytoplankton concentrations are low, pondus hydrogenii (pH), chemical oxygen demand (COD), total phosphorus (TP), total nitrogen (TN), water temperature (WT), and conductivity significantly affect them. At medium concentrations, COD, TP, TN, and WT have significant effects. At high concentrations, transparency and dissolved oxygen (DO) significantly impact phytoplankton, while TP no longer has a significant effect. These findings provide valuable insights for policymakers and environmental managers, supporting the prevention and control of harmful algal blooms in Lake Taihu and similar aquatic systems.

Estimation of hydrochemical profile and trophic status of a coastal Ramsar site in south west coast of India

Coastal lakes are confronting a spectrum of threats arising from both natural processes and human activities. This study presents an investigation into the nutrient and trophic status of the Ramsar-designated (Ramsar site No. 1204) Ashtamudi Lake (ASL; area= 56 km2), situated along the southwest coast of India. To establish a comprehensive hydrochemical profile, 50 representative water samples comprising lake, surface and bottom layers were systematically collected from 25 distinct sites during the non-monsoon and monsoon seasons of 2017. Physcio-chemical characteristics were evaluated using standard protocols and procedures. The salinity observations consistently position the majority of the lake's area within the 'polyhaline' condition (18–30 PSU) throughout the year. The evaluation of nutrient ratios (DIN/DIP, DSi/DIN, and DSi/DIP) during the respective seasons highlights a prevalent phosphorus (P) and silicon (Si) limited scenario during non-monsoon period. This condition is marked by elevated dissolved inorganic nitrogen (DIN) concentrations juxtaposed with lower levels of dissolved inorganic phosphorus (DIP) and dissolved silicon (DSi). The computed Trophic Index (TRIX) unequivocally denotes a 'hypertrophic' state within the lake during the non-monsoon season. This characterization is upheld by TRIX values of 7.73±0.61 and 8.06±0.62 for surface and bottom water during non-monsoon. Further insight into the TRIX findings is derived from the supplementary Efficiency Coefficient (EF) index, which accentuates ASL's limited nutrient assimilation in conjunction with a substantial input of DIN. Overall, the sustained condition of occurrence of low dissolved oxygen and elevated DIN/DIP ratios exacerbates the hypertrophic state. This complex interplay heightens ecological strain, thereby imperiling aquatic organisms, particularly valuable fishery resources. Unfortunately, this situation invariably curtails the essential ecosystem services furnished by ASL. Therefore, the adoption of strategic interventions aimed at ameliorating nutrient influx and restoring a balanced trophic equilibrium stands imperative to mitigate ecological degradation and uphold the lake's pivotal contributions to its surrounding environment.

Ontogenetic, Sexual, and Monthly Niche Segregation of Sepia esculenta in the Northern East China Sea Revealed by Stable Carbon and Nitrogen Isotopes.

Golden cuttlefish play a significant role in the food web of the East and Yellow Seas and are a valuable fishery resource in Chinese coastal waters. Samples of golden cuttlefish were obtained from the northern East China Sea between September 2021 and March 2022, and stable isotope methods were utilized in this study to examine the variations in the forage ecology of golden cuttlefish. Our findings reveal dynamic shifts in carbon and nitrogen stable isotopes (δ13C and δ15N), highlighting intricate foraging strategies tailored to growth and environmental changes. A notable trend emerges: an initial growth-linked rise in δ13C and δ15N enrichment, followed by seasonal fluctuations mirroring seasonal food availability. The ontogenetic niche evolution displays striking habitat shifts and trophic level escalation in small mantle length stages, transitioning to niche overlap and subtle trophic shifts later on. Sex-specific differences emerge, with females occupying higher trophic levels than males in most samples. This comprehensive study underscores the complexity and adaptability of golden cuttlefish feeding ecology, inviting further inquiry into their intricate relationships within the marine ecosystem.

Time series modeling of coastal fishery landings on the Southwestern Atlantic shelf: Influence of environmental drivers

AbstractTime‐series modeling of fisheries provides insights into stock tendencies and enables short‐term forecasting of landings, aiding decision makers in establishing management priorities. The Rio de la Plata Estuary and its maritime front sustain valuable fisheries for Argentina and Uruguay, with striped weakfish (Cynoscion guatucupa), whitemouth croaker (Micropogonias furnieri), and Argentine hake (Merluccius hubbsi) historically representing highest catches. However, their landings have declined in recent decades. To support resource management, we investigated the effectiveness of Autoregressive Integrated Moving Average (ARIMA) models in capturing fishery landing dynamics and providing reliable short‐term predictions. The best models exhibited a good fit and accurately captured the overall trends of landings. Residual variability unaccounted for by the model was analyzed in relation to time‐lagged environmental conditions. A wavelet coherence analysis was employed to examine the effect of the most significant variables on landings. Results revealed that environmental conditions affect differentially landings of each species as a result of their particular ecological traits. Turbidity and salinity affected mainly M. furnieri, which inhabits the innermost part of the estuary. Additionally, C. guatucupa, inhabiting the outer estuary and coastal region, exhibited a stronger association with river runoff compared to M. hubbsi, which inhabits the continental shelf. This study provides the first evidence of ARIMA models' reliability in representing the temporal evolution of catch in these fisheries, offering valuable tools for short‐term landings forecasting and facilitating sustainable management. Wavelet analysis findings will also contribute to enhancing our comprehension of trends in the correlation between environmental conditions and commercial landings.

Post-harvest losses in marine fisheries of Bangladesh

Existing literature highlights significant income loss due to Post-Harvest Loss (PHL) across the fisheries value chain in developing countries like Bangladesh. This is attributed to inappropriate fishing tools, poor infrastructure, inadequate storage facilities, and inefficient transportation. This study estimated PHL and its determinants in Bangladesh's marine fisheries using the Questionnaire Loss Assessment Method (QLAM) based on data collected from 1132 respondents, including fishermen and traders, from October 2019 to March 2021. The results reveal that physical, market, and monetary PHL in marine fisheries are 0.82 %, 6.41 %, and $228.52 per ton, respectively. Annually, the country loses approximately $151 million due to PHL in marine fisheries, with the highest market losses in Snapper, Pomfret, and Hilsa fish. The main reasons for PHL include the duration of fish remain in the net after being caught, insufficient ice, lack of insulated containers and storage facilities, delayed marketing, and oversupply. The study suggests adopting modern harvesting technology, enforcing regulations for scientific gear, and increasing storage capacity at landing and selling points to reduce PHL in marine fisheries.

Distribution of lobster larvae, Homarus americanus, and zooplankton prey in the gulf of maine and georges bank stock area

The American lobster, Homarus americanus H. Milne-Edwards, 1837 supports a valuable fishery subject to rapid warming of the Gulf of Maine (GOM) and Georges Bank (GBK). Comprehensive information related to large-scale larval distribution is lacking due to the logistical challenge of sampling their hyper-dispersed larvae. In 2021, we established seasonal abundance patterns of larvae and their prey in the GOM on an unprecedented spatial scale with a season-long survey at transects spanning approximately 300 km of coastline. We compared the current distribution of larvae with historical surveys with respect to differences between inshore and offshore (5 versus 40 km), and between eastern and western hydrographic regions. We also examined spatial and temporal patterns in the abundance of zooplankton prey. The distribution of recently hatched stage I larvae extended offshore at the transect off Rye, NH and was consistent with the reported movement of ovigerous lobsters offshore to hatch their eggs. By contrast, stage I larvae were most abundant nearshore and rare offshore at other transects along the coast. Our results confirmed historical patterns of high abundance of competent stage IV larvae in the western Gulf of Maine and low abundance in the east. We also identified the potential for a temporal mismatch between the abundance of larvae and the biovolume of copepods at transects in Milbridge, ME and Rye, NH with peak copepod abundance occurring either well before or after the peak abundance of lobster larvae. The data collected fill a gap in our understanding of larval distributions and seasonal progression in the Gulf of Maine, establish a baseline for future studies, and provide an opportunity to validate established biophysical models of larval transport. Yet a longer time series of broad-scale surveys is needed to better understand intricacies of factors influencing larval abundance and distribution. The project was an industry-led collaboration with government and academic scientists providing proof of concept for future collaborative research.

Role of Mangroves as Fishery Resource: A Systematic Review

Mangroves are valuable for their fishery resources, coastline stabilization abilities, water quality and clarity benefits, provision of habitat to economically profitable and ecologically important species, carbon sequestration services, and climate regulation capabilities. For centuries, mangroves have contributed significantly to the socioeconomic lives of coastal dwellers; especially in coastal fishery by providing nursery grounds for finfishes. Fishery resource services provided by mangrove ecosystem play an important role as the habitat, nursery ground, feeding ground, and spawning ground for various marine fish species. Despite their enormous socio-economic value and ecological significance, mangrove ecosystems are under severe threat such as large scale clearing, small scale harvesting and grazing, and industrial threats. The productivity of mangrove ecosystems has been linked to the well-being of valuable fisheries because of the role mangroves play as nursery habitat for a variety of marine and estuarine species. Many species of mangrove-related fish and crab have served the coastal communities as a natural, cheap and balanced nutritional source. Mangroves provide vital ecosystem services to coastal fishing communities through the enhancement of fisheries production. Due to their economic and ecologic significance, it is important to look to the future of these systems in the face of ‘fishery resource’ so that policy makers may act quickly to preserve and protect these ecosystems. Present review provides recent information on role of mangroves as fishery resource by studying the updated published literature and the threats faced by the mangroves. It is suggested that strategies should be prepared and rigorously implemented for the conservation and restoration of mangrove ecosystem.

Proximate Compositions and Fatty Acid Profiles of Raw and Processed Holothuria polii and Holothuria tubulosa from the Aegean Sea

Sea cucumbers have become a highly valuable fishery product, and therefore the determination of their proximate compositions and fatty acid profiles are useful indicators of their physiological status and nutritional value. Thus, various raw and processed products, such as raw, dried, frozen, boiled, and salted Holothuria polii and Holothuria tubulosa that were collected from the Aegean Sea were analyzed. Although there were some notable differences in the proximate and fatty acid profiles between the two species and among the various processing forms, both H. polii and H. tubulosa had a high nutritional value. They were rich in proteins (up to 68.5% in the dried form), and although their lipid fraction was low (0.3–3.9%), it was characterized by very high levels of arachidonic acid (19.1–30.9% of total fatty acids) and eicosapentaenoic acid (8.5–15.7) that play vital roles in human growth, development, and health. In addition, their n-3/n-6 fatty acid ratios were within the recommended ranges, while their low Atherogenic and Thrombogenic indices and high Hypocholesterolemic index denote their high protective role against coronary artery disease. The provided information sheds light on the high nutritional value of this important marine fishery resource and provides valuable information for its preservation and processing. This information could also help policy makers, stakeholders, and the public to recognize the importance of this valuable fishery resource for human nutrition and to adopt preventative measures toward its sustainable exploitation.

Assessing the combined effects of catchment land use and runoff on estuarine fish assemblages

Connectivity between land and sea through the movement of species, energy and nutrients means that land-based impacts can affect the structure and functioning of nearby coastal ecosystems. As the interface between land and sea, estuaries are often faced with increasing pressures from catchment modifications (e.g. the removal of terrestrial vegetation) which can alter the overall health of estuaries (e.g. the degradation of coastal water quality due to an increase in terrestrial runoff) and change the value of habitat for many marine species. These landscape-scale impacts can, however, be mediated through variations in the context and connectivity of seascapes (e.g. greater extent of vegetated ecosystems help to filter nutrients). We surveyed fish across five estuaries over four years using underwater videography and sought correlations between fish biodiversity and abundance with variables indexing catchment land use, seascape connectivity, and coastal water quality. Fish assemblages were more abundant and diverse at sites which had lower chlorophyll-a concentrations and were nearer to the estuary mouth, in conjunction with catchments containing higher percent of natural land and heterogenous seascapes. Sites with lower concentrations of chlorophyll-a supported indicator species from more diverse functional groups that had greater fisheries values, in comparison to indicator species from sites with high concentrations of chlorophyll-a. This research can help direct coastal management to better prioritise management in coastal ecosystems, thereby enhancing fish richness and abundance, functional group richness and fisheries value.