In-stream habitat enhancement is widely used to improve ecological conditions in rivers, often prioritizing key fish life stages such as spawning and juvenile development. However, no standard approaches exist to predict their effects on fish recruitment and populations. Here, we use a spatially-explicit population dynamics model that integrates functional habitat dynamics to assess the impact of two rehabilitation measures in a hydropower-impacted section of the Inn River (SE Germany) on the recruitment potential of four rheophilic and lithophilic fish species — grayling, nase, barbel, and chub. Rehabilitation measures implemented included the construction of a bypass channel and an island side-channel system to improve both longitudinal connectivity and habitat conditions. In addition, we analyzed two alternatives, which would enhance functional availability of nursery habitats from actual 33.2% to 66.8% and 95.3%, respectively. The results suggest that the improved habitat conditions will yield on average additional 14.9 individuals/ha (5.6 kg/ha) of the target species. However, the limited accessibility of usable nursery habitat constitutes a significant recruitment bottleneck for all species. In the alternative scenarios, the increase of functional connectivity will result in average densities of 17.9 and 25.8 individuals/ha, respectively. However, potential further improvements are species-specific, because of distinct population responses to spawning-to-nursery habitat ratios, with density changes varying between -11.7% for grayling and +172.6% for chub. This study not only demonstrates the applicability of the modeling approach for assessing and planning rehabilitation measures but also emphasizes the importance of considering habitat ratios and their functional connectivity to optimize recruitment potential.
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