The analysis of morphological variability of the initial stock within the breed type Sarboyan carp (Cyprinus carpio L.) by the principal component method is presented. The research was conducted in 2022, 2023 in the Novosibirsk region. The Sarboyan carp stock (males and females) from the fish breeding farm was studied according to eight valuation measurements: body weight, absolute body length, body length without tail fin, maximum height, width and girth. A comparative analysis of the body features of the Sarboyan carp belonging to four haplotypes (H1, H15, H16, H17) was carried out. The morphometric features of the Sarboyan carp were processed using principal component method. It was found that sexual dimorphism was noted on the basis of total size: females have larger sizes than males. In the fish stock under study, a trend towards the difference between H1 and H16 haplotypes was established. The individuals in the H1 haplotype are relatively thicker and shorter compared to H16. There is a group of fish with unknown haplotypes in the data structure, all of which show a shift towards the third component relative to H1, i.e. they have a higher back and smaller body thickness. No haplotypic differences were found in the component showing an apparent inverse relationship between head length trait, body length and absolute fish length. Multivariate analysis of morphological variability also showed that distribution of the individuals in the three-dimensional space PC2-PC3-PC4, free from size-age variability, allows pre-selection of fish with the required proportions of morphological features for further reproduction.