First Forms Of Life Research Articles

The Moon-Forming Impact and the Autotrophic Origin of Life.

The Moon-forming impact vaporized part of Earth's mantle, and turned the rest into a magma ocean, from which carbon dioxide degassed into the atmosphere, where it stayed until water rained out to form the oceans. The rain dissolved CO2 and made it available to react with transition metal catalysts in the Earth's crust so as to ultimately generate the organic compounds that form the backbone of microbial metabolism. The Moon-forming impact was key in building a planet with the capacity to generate life in that it converted carbon on Earth into a homogeneous and accessible substrate for organic synthesis. Today all ecosystems, without exception, depend upon primary producers, organisms that fix CO2 . According to theories of autotrophic origin, it has always been that way, because autotrophic theories posit that the first forms of life generated all the molecules needed to build a cell from CO2 , forging a direct line of continuity between Earth's initial CO2 -rich atmosphere and the first microorganisms. By modern accounts these were chemolithoautotrophic archaea and bacteria that initially colonized the crust and still inhabit that environment today.

Influence of Abiotic Factors in the Chemical Origin of Life: Biomorphs as a Study Model.

Since the formation of the Earth, minerals have been the key to understanding how life originated. It is suggested that life arose from minerals; they are considered to favor the formation and replication of biomolecules. In conjunction with minerals, the abiotic factors of the Precambrian era enabled the origin, development, and maintenance of life. To explain and understand the chemical origin of life, theories have been postulated for decades, and some of them have gone from mere postulates to evidence that have contributed to science in this direction. Several research groups have developed study models elucidating which could have been the first forms of life; in this sense, calcium, barium, or strontium silica carbonates have been synthesized in vitro to emulate morphologies of organisms. Aimed at understanding better the influence of abiotic factors in the formation of different chemical structures, the importance of the different types of physical and chemical abiotic factors in the origin of life are reviewed, as well as their influence on the morphology of biomorphs.

The evolution of working memory

To be able to maintain sensory information long enough to make decisions is a characteristic of all living things, including single cells, plants, and animals. The maintenance of sensory information despite interference is also a generic definition of working memory, and thus, its evolution began with the very first forms of life. In contrast to this basic definition of working memory, Baddeley and Hitch (1974) proposed a multicomponent theory of working memory and hypothesized that attention to and completion of a task required four specific cognitive components:1) a central executive, which selects the appropriate stimuli to attend to,2) a visuospatial sketchpad, which views the external world,3) phonological storage, which temporarily stores and processes sounds, and4) an episodic buffer, which is a temporary memory area that integrates information from the visuospatial sketchpad and phonological storage until the central executive acts upon that information.The present chapter traces the evolution of these components and the basic principles of learning and memory that guided them from the first forms of life to modern Homo sapiens.

Hydrothermal Chemistry and the Origin of Cellular Life.

Two processes required for life's origin are condensation reactions that produce essential biopolymers by a nonenzymatic reaction, and self-assembly of membranous compartments that encapsulate the polymers into populations of protocells. Because life today thrives not just in the temperate ocean and lakes but also in extreme conditions of temperature, salinity, and pH, there is a general assumption that any form of liquid water would be sufficient to support the origin of life as long as there are sources of chemical energy and simple organic compounds. We argue here that the first forms of life would be physically and chemically fragile and would be strongly affected by ionic solutes and pH. A hypothesis emerges from this statement that hot springs associated with volcanic land masses have an ionic composition more conducive to self-assembly and polymerization than seawater. Here we have compared the ionic solutes of seawater with those of terrestrial hot springs. We then describe preliminary experimental results that show how the hypothesis can be tested in a prebiotic analog environment.

Exploration of biological phenomena of below-background natural radiation

Worldwide, humans are exposed to a mean background radiation dose of about 2.4 mSv per year. Natural background radiation is a constant and ubiquitous environmental factor affecting all living things on this planet, and organisms have evolved in the presence of the natural radiation since the first forms of life appeared on Earth. However, its role in biology is still not completely understood. Here, we summarize the interesting biological responses in organism at below-background radiation and highlight recent development of the studies with molecular based analyses. To date, deprivation of natural background radiation has been carried out with shielding chambers or by conducting experiments in underground laboratories. In recent decades some research groups have reported changes to growth-related biological endpoints in microorganisms and mammalian cells under low-background radiation conditions. Moreover, new technologies, such as DNA microarray and next-generation sequencing, have begun to shed fresh light on the molecular mechanisms of these biological phenomena. Although there is no consistent explanation for the mechanisms so far, such studies might provide clues toward an understanding of the biological responses to natural background radiation.

Transcriptome analysis reveals a stress response of Shewanella oneidensis deprived of background levels of ionizing radiation.

Natural ionizing background radiation has exerted a constant pressure on organisms since the first forms of life appeared on Earth, so that cells have developed molecular mechanisms to avoid or repair damages caused directly by radiation or indirectly by radiation-induced reactive oxygen species (ROS). In the present study, we investigated the transcriptional effect of depriving Shewanella oneidensis cultures of background levels of radiation by growing the cells in a mine 655 m underground, thus reducing the dose rate from 72.1 to 0.9 nGy h-1 from control to treatment, respectively. RNASeq transcriptome analysis showed the differential expression of 4.6 and 7.6% of the S. oneidensis genome during early- and late-exponential phases of growth, respectively. The greatest change observed in the treatment was the downregulation of ribosomal proteins (21% of all annotated ribosomal protein genes during early- and 14% during late-exponential) and tRNA genes (14% of all annotated tRNA genes in early-exponential), indicating a marked decrease in protein translation. Other significant changes were the upregulation of membrane transporters, implying an increase in the traffic of substrates across the cell membrane, as well as the up and downregulation of genes related to respiration, which could be interpreted as a response to insufficient oxidants in the cells. In other reports, there is evidence in multiple species that some ROS not just lead to oxidative stress, but act as signaling molecules to control cellular metabolism at the transcriptional level. Consistent with these reports, several genes involved in the metabolism of carbon and biosynthesis of amino acids were also regulated, lending support to the idea of a wide metabolic response. Our results indicate that S. oneidensis is sensitive to the withdrawal of background levels of ionizing radiation and suggest that a transcriptional response is required to maintain homeostasis and retain normal growth.

Origins of Life

Charles Darwin in 1871 suggested that microbial life originated in some 'warm little pond' full of 'ammonia, phosphoric salts, heat and electricity'. In light of recent discoveries on the origin of life, Charles Darwin's theory appears prescient. In the first half of the 20th century, Alexander Oparin established the 'metabolism first' hypothesis to explain the origin of life. Aligning with this hypothesis, most scientists believe that the first forms of life evolved in the warm vents of ancient seas.

Chemistry Constraints on the Origin of Life

AbstractThis analysis starts from the view that prebiotic chemical evolution, leading to the first forms of life on earth, was based on a series of sequential steps, each determined by its own contingent initial conditions. This view is opposed to the more established one, which sees the origin of life as a series of preordered series of events, where each one is deterministically caused by the previous one and causally determines the next one. Some of the main constraints of chemistry that affect such prebiotic chemical evolution are examined. The notion of contingency is seen as a very important organizing process subjected to chemistry, whereby contingency also responds to a certain degree of determinism. Kinetic control, as another determinant and constraint of the prebiotic evolutionary process, can be critically important and, at a certain point of the chemical evolutionary process, kinetic control in the form of catalysis will become essential. Simple peptides can be considered as the first catalysts, at least for the condensation of peptide bonds. The concentration threshold for prebiotic reactions is often not taken into account in the literature, particularly in the field of the prebiotic RNA world. In addition, this shortcoming can make the entire prebiotic RNA world construction shaky and unreliable, including the “myth” of the perennial self‐replication of an RNA macromolecule. The general question of self‐replication and the problem of homochirality are also briefly discussed. Although these chemical constraints may hinder the reconstruction of life as it is now in the laboratory, their understanding can be useful and even essential for devising a synthetic alternative route to functional macromolecules and to their metabolic interactions.

Multiplication of microbes below 0.690 water activity: implications for terrestrial and extraterrestrial life.

Since a key requirement of known life forms is available water (water activity; aw ), recent searches for signatures of past life in terrestrial and extraterrestrial environments have targeted places known to have contained significant quantities of biologically available water. However, early life on Earth inhabited high-salt environments, suggesting an ability to withstand low water-activity. The lower limit of water activity that enables cell division appears to be ∼ 0.605 which, until now, was only known to be exhibited by a single eukaryote, the sugar-tolerant, fungal xerophile Xeromyces bisporus. The first forms of life on Earth were, though, prokaryotic. Recent evidence now indicates that some halophilic Archaea and Bacteria have water-activity limits more or less equal to those of X. bisporus. We discuss water activity in relation to the limits of Earth's present-day biosphere; the possibility of microbial multiplication by utilizing water from thin, aqueous films or non-liquid sources; whether prokaryotes were the first organisms able to multiply close to the 0.605-aw limit; and whether extraterrestrial aqueous milieux of ≥ 0.605 aw can resemble fertile microbial habitats found on Earth.

Chemical composition of the primary aqueous phase of the earth and origin of life

Prokaryotes and cytoplasm of eukaryotes are dominated by K+, whereas the extracellular fluid of most species of multicellular organisms is dominated by Na+. It was substantiated that the K+/Na+ ratio in the salt constituent of the cells of modern organisms qualitatively reflects the proportions between these elements in the aqueous phase, in which the first forms of life and the protocell originated. The same conclusion is done by Armen Y. Mulkidjanian et al. (PNAS 13, 2012, E821-830). The chemical composition of primary aqueous phase of the Earth was reconstructed using thermodynamic numerical simulation of the equilibrium composition of the “carbonaceous chondrite material-water”, “primitive mantle material-water”, “ultramafic rock-water”, “mafic rocks-water” systems that are open with respect to CO2 and CH4.

A Theory of Circular Organization and Negative Feedback: Defining Life in a Cybernetic Context

All life today incorporates a variety of systems controlled by negative feedback loops and sometimes amplified by positive feedback loops. The first forms of life necessarily also required primitive versions of feedback, yet surprisingly little emphasis has been given to the question of how feedback emerged out of primarily chemical systems. One chemical system has been established that spontaneously develops autocatalytic feedback, the Belousov-Zhabotinsky (BZ) reaction. In this essay, I discuss the BZ reaction as a possible model for similar reactions that could have occurred under prebiotic Earth conditions. The main point is that the metabolism of contemporary life evolved from primitive homeostatic networks regulated by negative feedback. Because life could not exist in their absence, feedback loops should be included in definitions of life.

Why Is the Definition of Life So Elusive? Epistemological Considerations

A central question of astrobiology concerns the origin and distribution of life in the Universe. For this reason, astrobiology can be considered to fall within the science called transitional biology. If we accept that life originated by a process of prebiotic chemical evolution, the next question concerns the nature of the transitional pathway from inanimate chemical systems to the first forms of life on Earth. These possible transitional states are the subject matter of transitional biology as a discipline. A related question concerns attempts to synthesize living systems in the laboratory. In contrast to traditional biology, the definition of life has an important methodological role in transitional biology, yet we still do not have a generally accepted definition despite the immense accumulation of empirical data in the life sciences. This review analyzes three approaches to defining life and concludes that all three are problematic in that they attempt to define life with undefined terms, confuse a description with a definition, or define life arbitrarily in terms of minimal living systems.

The physiological evolution of animals: Sodium is the clue to resolving contradictions

The origin and evolution of life and the role of inorganic environmental factors in its rise and development remain key problems of natural science. The assumption that the first forms of life—protocells—appeared not in the “sodium” sea, as has been always believed, but in “potassic” water basins is substantiated in the article below. Later, protocells with the potassic cytoplasm adapted to the sodium water environment. The role of sodium in animal evolution is the core subject of the article.

Intrinsic asymmetries of amino acid enantiomers and their peptides: A possible role in the origin of biochirality

L-amino acids and D-carbohydrates were incorporated into the first forms of life over 3.5 billion years ago, presumably from racemic mixtures of organic solutes produced by abiotic synthetic pathways. The process by which this choice occurred has not been established, but a consensus view is that it was a chance event, such that life could equally well have used D-amino acids and L sugars. In this review we will explore a second, less plausible alternative that minute differences in the physical properties of certain enantiomers made it more likely that L-amino acids and D-carbohydrates would be incorporated into early life. By all classical criteria, chiral isomers are perfect mirror image structures and, therefore, are expected to be identical in their macroscopic properties. However, scattered reports in the literature suggest that there may be slight differences in the physical properties of L- and D-amino acids and their polymers, which could lead to a preferred incorporation of L-amino acids into primitive forms of life. Here we present a literature survey of this issue and discuss its possible role in the origin of biochirality.

The Emergence Principle in Biological Hierarchies

Emergent properties have been described by Mill, Lewes, Broad, Morgan and others, as novel, nonadditive, nonpredictable and nondeducible within a hierarchical context. I have developed a more definitive concept of a hierarchy that can be used to inspect the phenomenon of emergence in a new and detailed manner. A hierarchy is held together by descending constraints and new features can arise when an upper level entity restrains its components in new combinations that are not expected when viewing these components alone. Examples of emergent features are (i) matching anticodons and amino acids by aminoacetyl-tRNA synthetase enzymes appearing early among the first forms of life, (ii) negative feedback in end-product inhibition first occurring in microbes, (iii) memory in animals and (iv) apical cells in plants. Until recently, life was considered only in terms of physics and chemistry, but now it is known to have a third aspect of information that along with the descendant constraints in its hierarchical organization makes emergentism possible within a reductionist’s framework.

The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life.

Of the three domains of life (Eukarya, Bacteria, and Archaea), the least understood is Archaea and its associated viruses. Many Archaea are extremophiles, with species that are capable of growth at some of the highest temperatures and extremes of pH of all known organisms. Phylogenetic rRNA-encoding DNA analysis places many of the hyperthermophilic Archaea (species with an optimum growth > or = 80 degrees C) at the base of the universal tree of life, suggesting that thermophiles were among the first forms of life on earth. Very few viruses have been identified from Archaea as compared to Bacteria and Eukarya. We report here the structure of a hyperthermophilic virus isolated from an archaeal host found in hot springs in Yellowstone National Park. The sequence of the circular double-stranded DNA viral genome shows that it shares little similarity to other known genes in viruses or other organisms. By comparing the tertiary and quaternary structures of the coat protein of this virus with those of a bacterial and an animal virus, we find conformational relationships among all three, suggesting that some viruses may have a common ancestor that precedes the division into three domains of life >3 billion years ago.

From organic molecules in space to the origins of life and back

Delivery of organic molecules much simpler than building blocks of biological structures may have been sufficient to initiate the process of chemical evolution leading to the first forms of life. By defining the simplest protocellular systems, it is possible to deduce what organic molecules were likely to be necessary for this process. Some of these molecules were building blocks of protocellular structures which self-assembed from amphiphilic compounds into vesicles and other structures, such as micelles and multilayers. There must also have been relatively simple mechanisms by which amino acids or their precursors were incorporated into simple peptides. At some point this process became compartmented in vesicles, which would require the emergence of cellular transport and metabolism. Energy required for these processes may have been provided by the coupling of the transmembrane proton gradient to the synthesis of high energy compounds, such as thioesters, or by carbon disproportionation reactions, starting with sugars. If these conjectures are correct, it follows that the first forms of life emerged as self-contained molecular systems, rather than as macromolecules that somehow incorporated the basic properties associated with the living state.

Carbonaceous meteorites as a source of sugar-related organic compounds for the early Earth.

The much-studied Murchison meteorite is generally used as the standard reference for organic compounds in extraterrestrial material. Amino acids and other organic compounds important in contemporary biochemistry are thought to have been delivered to the early Earth by asteroids and comets, where they may have played a role in the origin of life. Polyhydroxylated compounds (polyols) such as sugars, sugar alcohols and sugar acids are vital to all known lifeforms-they are components of nucleic acids (RNA, DNA), cell membranes and also act as energy sources. But there has hitherto been no conclusive evidence for the existence of polyols in meteorites, leaving a gap in our understanding of the origins of biologically important organic compounds on Earth. Here we report that a variety of polyols are present in, and indigenous to, the Murchison and Murray meteorites in amounts comparable to amino acids. Analyses of water extracts indicate that extraterrestrial processes including photolysis and formaldehyde chemistry could account for the observed compounds. We conclude from this that polyols were present on the early Earth and therefore at least available for incorporation into the first forms of life.

Recent advances in chemical evolution and the origins of life

This paper discusses the already 60 year old ideas of Oparin and Haldane, who suggested that the first forms of life were anaerobic, heterotrophic bacteria coming from chemical abiotic synthesis of organic compounds.

Bacterial viruses, prophages, and plasmids, reconsidered.

Prophages and plasmids offer to the bacterial cells generalized access to each other's genes. The result is an extremely rich, available gene bank. It has successfully supported the original bacterial life since its beginnings and therefore it has conditioned all bacterial cells. Thus, most of the basic mechanisms for the living world, the richest variety of new genes, and particularly the improved ways of using DNA as an extremely adaptable genetic material happened in bacteria with the help of prophages and plasmids. This fact has profoundly marked all the biosphere. The ancestor of the nucleus probably started as an accumulation of prophages and plasmids integrated in the growing "chromosome" of the outer symbiont of the first eukaryotes. Many bacterial vestiges were probably retained in eukaryotes, mostly those related to the dominant and lasting role of small replicons in all their bacterial precursors. These vestiges may, for example, serve as an endogenic source for some DNA viruses in eukaryotes. The other animal and plant viruses seem to derive directly or indirectly from prophages or plasmids. In the case of RNA viruses they may have originated from probable RNA small replicons present in the first forms of life on earth. Some confusion arose in biology, as viruses were discovered first and therefore their most probable ancestors, the plasmids and the prophages which were discovered later, were thought to be viruslike, or viruses, as is the case with prophages.