Firefly Bioluminescence Research Articles

Tautomer-Selective Fluorescence Spectroscopy of Oxyluciferin Anions.

Bioluminescence in fireflies and related insects arises as emission from the fluorophore oxyluciferin, yet the color of the emission in these insects can range from red to green. The chromophore's microenvironment or multiple tautomeric forms may be responsible for the color tuning; however, these effects are difficult to separate in condensed phases. To investigate the role of oxyluciferin tautomerization in the color tuning mechanism, gas-phase spectroscopy eliminates solvent effects and allows us to study the fluorescence from individual tautomers. Using a home-built mass-spectrometry setup with a cylindrical ion trap cooled with liquid nitrogen, we measure fluorescence from the enol-locked form of oxyluciferin in the gas phase and characterize the photophysics of both keto and enol forms. At 100 K, the enol-locked form has an emission maximum of 564 ± 1 nm, coinciding with a previously reported assignment in oxyluciferin. We measure the absorption spectrum and find a maximum at 560.5 ± 0.5 nm, which implies a Stokes shift of 110 cm-1. The absorption spectrum is compared to Franck-Condon simulated spectra that identify one dominant vibrational mode in the transition. Additionally, we ultimately separated the emission by the enol and keto forms present in the trap by selectively exciting each form. We demonstrate that fluorescence measured close to the 0-0 transition limits the reheating of the ions, thereby providing the coldest ions and therefore the narrowest emission spectra. These experimental data are also crucial benchmarks for computational studies, offering actual emission spectra in the gas phase for both tautomeric forms. Thus, our findings serve as essential reference points for excited-state calculations aimed at understanding the color tuning mechanism of bioluminescence computationally.

A light in the dark: a mid-Cretaceous bioluminescent firefly with specialized antennal sensory organs.

The beetle superfamily Elateroidea comprises the most biodiverse bioluminescent insects among terrestrial light-producing animals. Recent exceptional fossils from the Mesozoic era and phylogenomic studies have provided valuable insights into the origin and evolution of bioluminescence in elateroids. However, due to the fragmentary nature of the fossil record, the early evolution of bioluminescence in fireflies (Lampyridae), one of the most charismatic lineages of insects, remains elusive. Here, we report the discovery of the second Mesozoic bioluminescent firefly, Flammarionella hehaikuni Cai, Ballantyne & Kundrata gen. et sp. nov., from the Albian/Cenomanian of northern Myanmar (ca 99 Ma). Based on the available set of diagnostic characters, we interpret the specimen as a female of stem-group Luciolinae. The fossil possesses deeply impressed oval pits on the apices of antennomeres 3-11, representing specialized sensory organs likely involved in olfaction. The light organ near the abdominal apex of Flammarionella resembles that found in extant light-producing lucioline fireflies. The growing fossil record of lampyrids provides direct evidence that the stunning light displays of fireflies were already established by the late Mesozoic.

SYNTHESIS OF LaAlO3:Dy3+:Bi3+ NANOMATERIALS TO OPTICALLY MIMIC THE BIOLUMINESCENCE OF PHOTINUS SCINTILLANS (FIREFLY) AND ANTIBACTERIAL APPLICATIONS

Photinus scintillans is one of the species of fireflies, emits yellowish-green light with a peak wavelength of 575 nm. LaAlO3:Dy3+:Bi3+ nanomaterials prepared through sono-chemical process can serve as material for photo luminescence. The wavelength of light emitted by Photinus scintillans can also be obtained by optically exciting the synthesized sample with 353 nm wavelength. Dipole transition 4F9/2→6H13/2 gives photon of wavelength 576 nm, which is exactly same as that emitted by Photinus scintillans. The color chromaticity shows the yellowish green emission region of nanoparticles. This material can be used for the preparation of LEDs to emit a wavelength of 576 nm. When LEDs are prepared from this material, they can mimic the bioluminescence of fireflies. Thus, prepared nanoparticles can mimic the bioluminescence of Photinus scintillans fireflies. Both Dy doped and Bi co-doped samples at higher concentrations showed zone of clearance for Gram positive bacteria. Bi co-doped at higher concentrations had substantial inhibition across gram positive and negative bacterial colonies.

Realization of firefly bioluminescence cycle in vitro and in cells

The quantum yield (Q) of the “cold light” of firefly bioluminescence (BL) is remarkably high due to its nonradiative decay is extremely minimized. Thus, an artificial firefly represents the new generation of biomimetic “cold light” source with highest energy utilization. However, to manufacture a firefly-biomimetic “cold light” in vitro, one has to overcome several challenges including realization of the firefly BL cycle by incorporating the two important enzymes (i.e., firefly luciferase (Fluc) and luciferin-regenerating enzyme (LRE)) in one system. Here in this work, using self-prepared Fluc, LRE, and the main substrates, we realized the firefly BL cycle both in vitro and in cells. Moreover, using combinational analyses of HPLC and nESI-CID-MS/MS, we identified the main chemicals in the metabolic pathways underlying the firefly BL cycle. Using theoretical simulations, we revealed an optimum chemical route which balances the reaction cycle to achieve the highest BL intensity with the least chemical supplies. We anticipate that this pioneering study of the firefly cycle would provide industry with the opportunity to design tunable, economical, biomimetic “cold light” device in near future.

Spectral tuning of bioluminescence and visual sensitivity in males of Brazilian firefly species inhabiting dim light environments (Coleoptera: Elateroidea: Lampyridae).

Bioluminescence in fireflies is essential for sexual communication, and each species has evolved a specific bioluminescence emission capable of being detected by its visual system. This spectral "tuning"between visual sensitivity and bioluminescent emission has been established in 14species of North American fireflies inhabiting diverse photoecological niches. Here we extend that research to three Brazilian species. Macrolampis omissa inhabits the Cerrado (savannas), while Photinus sp1 and Pyrogaster moestus are often sympatric species inhabiting borders of mesophyll rain forests and secondary growth. P. moestus particularly favors humid areas of the forest. M. omissa and Photinus sp1 are twilight-active fireflies emitting yellow bioluminescence. P. moestus is a "twi-night" species emitting green bioluminescence. It initiates flashing at the end of twilight and continues activity into the night. The visual spectral sensitivity of dark-adapted compound eyes in these three species is similar, showing a maximum in the yellow-green wavelengths and a secondary peak in the near-UV, suggesting the presence of two receptors. The bioluminescence emission spectrum in each species is tuned to its yellow-green visual sensitivity peak. Green chromatic adaptation experiments on Photinus sp1 and P. moestus suggest the presence of a blue receptor. The presence of near-UV, blue, and long-wavelength receptors in the compound eyes would enable a trichromatic color vision in Brazilian firefly species active in dim illumination.

(Digital Presentation) Wavelength Controllable Multi-Color Firefly Luciferin Analogues

I will show you the multi-color luciferin analogues, and in particular the usefulness of near-infrared(NIR) luciferin analogues.Firefly bioluminescent reaction requires luciferin, luciferase, Mg2+, ATP and O2, and emits light at 560 nm (green-yellow light). As the light emission efficiency of the firefly bioluminescence system is extremely high(ΦBL=41%), this system is attracting widespread attention as a bioimaging tool.We have studied the relationship between structure modification and the firefly luminescence wavelength, where the luciferase of Photinus pyralis (Ppy) was used. As a result, we are able to control the wavelength of the luciferin analogues to some extent. An analog having the thiazoline ring connected directly to p-(dimethylamino)phenyl group exhibited blue shifted luminescence maximum. Furthermore, replacement of the dimethylamino group into a hydroxyl group caused blue shift of luminescence wavelength. On the other hand, Introduction of a double bond between the thiazoline ring and the benzene ring caused large red shift of luminescence wavelength.Based on these structure-activity relationships, we have synthesized a number of luciferin analogs. The shortest emission wavelength of luciferin analogs is 430 nm, and the longest is 760 nm by using Ppy luciferase. Among them, near-infrared(NIR) light is expected to be applied to in vivo imaging because of its high living body permeability.Therefore, Thus, AkaLumine, a luciferin analogue that produces light at 675 nm wavelength, was developed. This compound was shown to yield useful results when applied to the in vivo imaging of mice. We have improved the characteristics of AkaLumine to optimize this compound for use in in vivo imaging, thus obtaining the compounds dubbed TokeOni and seMpai. In this way, bioluminescence imaging technology is undergoing constant innovation, and we continue to develop NIR luciferin analogues that can be used as imaging tools.In this conference, I will present the characteristics of recently developed multi-color luciferin analogues, include NIR luciferin analogues. Figure 1

Quantum yield enhancement of firefly bioluminescence with biomolecular condensates.

The enzymatic luminescence reactions of fireflies are accelerated in the presence of biomolecular condensates comprising a positively charged peptide and ATP. We revealed that this acceleration is caused by the enrichment of reaction elements, local pH changes, and promotion of inhibitory intermediate dissociation, improving the bioluminescence quantum yield by approximately 10%.

PH-Dependent absorption spectrum of oxyluciferin analogues in the active site of firefly luciferase.

In the quest for the identification of the light emitter(s) responsible for the firefly bioluminescence, the study of oxyluciferin analogues with controlled chemical and electronic structures is of particular importance. In this article, we report the results of our experimental and computational investigation of the pH-dependent absorption spectra characterizing three analogues bound into the luciferase cavity, together with adenosine-monophosphate (AMP). While the analogue microscopic pKa values do not differ much from their reference values, it turns out that the AMP protonation state is analogue-dependent and never doubly-deprotonated. A careful analysis of the interactions evidences the main role of E344 glutamic acid, as well as the flexibility of the cavity which can accommodate any oxyluciferin analogue. The consideration of the absorption spectra suggests that the oxyluciferin enolate form has to be excluded from the list of the bioluminescence reaction products.

Exploring the Possibility of Excited State Keto‐Enolate Transformation of the Oxyluciferin‐Luciferase Complex with QM/MM Free Energy Simulations

AbstractFirefly bioluminescence has been widely studied due to its high quantum yield and its broad range of color modulation, but debates on the origin of its color modulation and the exact chemical form of the emitter are still ongoing. Herein, the keto‐enolate transformation of the oxyluciferin–luciferase complex is investigated using quantum mechanics/molecular mechanics (QM/MM) free energy simulations. We find that the free energy profile of this transformation largely depends on the protonation state of the phenoxy oxygen in oxyluciferin. Although the keto‐enolate transformation can be facilitated by protonation of this oxygen atom, the overall transformation is still unlikely and only the keto form will predominantly exist along our hypothesized reaction path. Nevertheless, we show with additional calculations with a modestly modified protein electric field that the energetics of the transformation can be heavily modulated with the protein electrostatics. This suggests that carefully modeling the protein–ligand interaction is key to understanding the reaction mechanism of the firefly bioluminescence and that it is not yet appropriate to completely rule out the possibility of having enolate participation.

Effects of heavy metals on intensity and coefficient of inhibition of firefly bioluminescence

We have analyzed the effects of heavy metals on changes in intensity and the inhibition coefficients of the firefly bioluminescence. The heavy metal compound used is PbNO3 (Pb); ZnNO3 (Zn), CuNO3 (Cu) and FeNO3 (Fe). The concentration of heavy metals used is 0.5 mg / l, 1 mg / l and 2 mg / l, for each heavy metal. The results found that the coefficient of inhibition and bioluminescence intensity was influenced by the molecular weight of heavy metals. The results explain that the cations participate in the re-distribution of electron density in chemical reactions and in the formation of electron excitation states. This pattern explains that the inhibition of the bioluminescence intensity is observed in the presence of heavy metals with higher molecular weight of heavy metals.

Development of a novel selection/counter-selection system for chromosomal gene integrations and deletions in lactic acid bacteria

BackgroundThe underlying mechanisms by which probiotic lactic acid bacteria (LAB) enhance the health of the consumer have not been fully elucidated. Verification of probiotic modes of action can be achieved by using single- or multiple-gene knockout analyses of bacterial mutants in in vitro or in vivo models. We developed a novel system based on an inducible toxin counter-selection system, allowing for rapid and efficient isolation of LAB integration or deletion mutants. The Lactococcus lactis nisin A inducible promoter was used for expression of the Escherichia coli mazF toxin gene as counter-selectable marker.ResultsThe flippase (FLP)/flippase recognition target (FRT) recombination system and an antisense RNA transcript were used to create markerless chromosomal gene integrations/deletions in LAB. Expression of NisR and NisK signalling proteins generated stable DNA integrations and deletions. Large sequences could be inserted or deleted in a series of steps, as demonstrated by insertion of the firefly bioluminescence gene and erythromycin resistance marker into the bacteriocin operons or adhesion genes of Lactobacillus plantarum 423 and Enterococcus mundtii ST4SA.ConclusionsThe system was useful in the construction of L. plantarum 423 and E. mundtii ST4SA bacteriocin and adhesion gene mutants. This provides the unique opportunity to study the role of specific probiotic LAB genes in complex environments using reverse genetics analysis. Although this work focuses on two probiotic LAB strains, L. plantarum 423 and E. mundtii ST4SA, the system developed could be adapted to most, if not all, LAB species.

Comparative transcriptomic analysis provides insights into the response to the benzo(a)pyrene stress in aquatic firefly (Luciola leii)

Many studies have reported that behavior and bioluminescence of fireflies could be affected by changes in environment conditions. However, little is known about how the deterioration of the aquatic environment affects aquatic fireflies, particularly with respect to molecular responses following exposure to water pollutants, such as benzo(a)pyrene (BaP), which is a key indicator in environmental risk assessment because of the hazards it poses. Here, whole transcriptome sequencing and gene expression analysis were performed on freshwater fireflies (Luciola leii) exposed to BaP (concentration of 0.01 mg/L). Four transcriptomic libraries were constructed for the control and treatment groups, including two biological replicates. From the mixed pools (each pool contains 60 individuals from three time points), a total of 54,282 unigenes were assembled. Furthermore, 329,337 of Single-nucleotide Polymorphisms (SNPs) and 1324 of Simple Sequence Repeats (SSRs) were predicted using bioinformatics, which is useful for the future development of molecular markers. Subsequently, 2414 differently expressed genes (DEGs) were identified in response to BaP stress in comparison to the control, including 1350 up-regulated and 1064 down-regulated DEGs. Functional enrichment showed that these DEGs are primarily related to innate immunity; xenobiotic biodegradation and response, biomacromolecule metabolism, biosynthesis, and absorption. Eight key BaP-responsive DEGs were screened to survey the dynamic changes of expression in response to BaP stress at different time points, and to validate the RNA sequencing data using quantitative real-time PCR. The results indicate that the expression of genes encoding UGT, CYP3A, CYP9, CYP6AS5 and ADHP were induced, while those encoding UGT2B10L, PTGDS, and ALDH were reduced, to participate in response to the BaP exposure and potentially help counteract the adverse effects of BaP. This investigation provides insight into the toxicological response of fireflies to the occurrence of water deterioration.

PH-Dependent fluorescence from firefly oxyluciferin in agarose thin films

The emitter of the firefly bioluminescence, oxyluciferin, and its derivatives were incorporated in agarose matrix to obtain self-supporting, lightweight fluorescent acidochromic thin films. This study demonstrates an alternative approach to investigating environmental effects on bioluminescent molecules.

Firefly genomes illuminate parallel origins of bioluminescence in beetles.

Fireflies and their luminous courtships have inspired centuries of scientific study. Today firefly luciferase is widely used in biotechnology, but the evolutionary origin of bioluminescence within beetles remains unclear. To shed light on this long-standing question, we sequenced the genomes of two firefly species that diverged over 100 million-years-ago: the North American Photinus pyralis and Japanese Aquatica lateralis. To compare bioluminescent origins, we also sequenced the genome of a related click beetle, the Caribbean Ignelater luminosus, with bioluminescent biochemistry near-identical to fireflies, but anatomically unique light organs, suggesting the intriguing hypothesis of parallel gains of bioluminescence. Our analyses support independent gains of bioluminescence in fireflies and click beetles, and provide new insights into the genes, chemical defenses, and symbionts that evolved alongside their luminous lifestyle.

A near maximum likelihood performance modified firefly algorithm for large MIMO detection

Abstract To meet the ever-growing demand for high data rates, employing a large number of antennas at both the transmitter and receiver is a necessity for future advanced wireless systems. Multiple-input multiple-output (MIMO) systems, which are equipped with multiple antennas, provide high data rates with high spectral efficiency. However, the design of an efficient, robust and non-erroneous detection algorithm is a huge challenge in large MIMO systems. In this paper, a stochastic bio-inspired meta-heuristic algorithm is proposed for large MIMO detection. The proposed algorithm is motivated by the bioluminescence of fireflies and uses a probabilistic metric to update solutions in the search space. Robustness of the proposed algorithm is verified under channel estimation errors at the receiver. Simulation results reveal that the proposed algorithm outperforms unordered congestion control ant colony optimization, congestion control ant colony optimization, standard particle swarm optimization, binary particle swarm optimization, memetic particle swarm optimization, firefly algorithm, firefly algorithm with neighborhood attraction, minimum mean square error and successive interference cancellation based MIMO detection techniques in terms of bit error rate (BER) performance. The proposed algorithm achieves near maximum likelihood BER performance with lower computational complexity. This makes the proposed algorithm an appropriate candidate for reliable detection in future large MIMO systems.

Turning on Solid-State Fluorescence with Light.

A bioinspired fluorophore that is analogous to the substrate in the bioluminescence of fireflies was prepared and reacts when exposed to weak blue LED light. Upon excitation, this material is photodecarboxylated with a nearly 81-fold enhancement of the solid-state emission, the fluorescence quantum yield of the product in solution is approximately 90 %, and violent disintegrative effects occur as a result of the release of carbon dioxide. Crystallographic and computational results, together with global spectral analysis of the kinetics, confirmed that most of the emission observed in the decay-associated spectra is intrinsic to the product molecule, with only a minor contribution from an excimer through π-π stacking of the molecules in the crystal.

QM/MM Study of the Formation of the Dioxetanone Ring in Fireflies through a Superoxide Ion.

The bioluminescence emission from fireflies is an astounding tool to mark and view cells. However, the bioluminescent mechanism is not completely deciphered, limiting the comprehension of key processes. We use a theoretical approach to study for the first time the arrival of a dioxygen molecule inside the fireflies protein and one path of the formation of the dioxetanone ring, the high-energy intermediate precursor of the bioluminescence. To describe this reaction step, a joint approach combining classical molecular dynamics (MD) simulations and hybrid quantum mechanics/molecular mechanics (QM/MM) calculations is used. The formation of the dioxetanone ring has been studied for both singlet and triplet states with the help of MS-CASPT2 calculations. We also emphasize the role played by the proteinic environment in the formation of the dioxetanone ring. The results obtained shed some light on an important reaction step and give new insights concerning the bioluminescence in fireflies.

Theoretical S1 ← S0 Absorption Energies of the Anionic Forms of Oxyluciferin by Variational Monte Carlo and Many-Body Green's Function Theory.

The structures of three negatively charged forms (anionic keto-1 and enol-1 and dianionic enol-2) of oxyluciferin (OxyLuc), which are the most probable emitters responsible for the firefly bioluminescence, have been fully relaxed at the variational Monte Carlo (VMC) level. Absorption energies of the S1 ← S0 vertical transition have been computed using different levels of theory, such as TDDFT, CC2, and many-body Green's function theory (MBGFT). The use of MBGFT, by means of the Bethe-Salpeter (BS) formalism, on VMC structures provides results in excellent agreement with the value (2.26(8) eV) obtained by action spectroscopy experiments for the keto-1 form (2.32 eV). To unravel the role of the quality of the optimized ground-state geometry, BS excitation energies have also been computed on CASSCF geometries, inducing a non-negligible blue shift (0.08 and 0.07 eV for keto-1 and enol-1 forms, respectively) with respect to the VMC ones. Structural effects have been analyzed in terms of over- or undercorrelation along the conjugated bonds of OxyLuc by using different methods for the ground-state optimization. The relative stability of the S1 state for the keto-1 and enol-1 forms depends on the method chosen for the excited-state calculation, thus representing a fundamental caveat for any theoretical study on these systems. Finally, Kohn-Sham HOMO and LUMO orbitals of enol-2 are (nearly) bound only when the dianion is embedded into a solvent (water and toluene in the present work); excited-state calculations are therefore meaningful only in the presence of a dielectric medium which localizes the electronic density. The combination of VMC for the ground-state geometry and BS formalism for the absorption spectra clearly outperforms standard TDDFT and quantum chemistry approaches.

Biosynthesis-inspired deracemizative production of d-luciferin by combining luciferase and thioesterase

Due to the strict enantioselectivity of firefly luciferase, only d-luciferin can be used as a substrate for bioluminescence reactions. Unfortunately, luciferin racemizes easily and accumulation of nonluminous l-luciferin has negative influences on the light emitting reaction. Thus, maintaining the enantiopurity of luciferin in the reaction mixture is one of the most important demands in bioluminescence applications using firefly luciferase. In fireflies, however, l-luciferin is the biosynthetic precursor of d-luciferin, which is produced from the L-form undergoing deracemization. This deracemization consists of three successive reactions: l-enantioselective thioesterification by luciferase, in situ epimerization, and hydrolysis by thioesterase. In this work, we introduce a deracemizative luminescence system inspired by the biosynthetic pathway of d-luciferin using a combination of firefly luciferase from Luciola cruciata (LUC-G) and fatty acyl-CoA thioesterase II from Escherichia coli (TESB). The enzymatic reaction property analysis indicated the importance of the concentration balance between LUC-G and TESB for efficient d-luciferin production and light emission. Using this deracemizative luminescence system, a highly sensitive quantitative analysis method for l-cysteine was constructed. This LUC-G-TESB combination system can improve bioanalysis applications using the firefly bioluminescence reaction by efficient deracemization of D-luciferin.

Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae).

Bioluminescence, which living organisms such as fireflies emit light, has been studied extensively for over half a century. This intriguing reaction, having its origins in nature where glowing insects can signal things such as attraction or defense, is now widely used in biotechnology with applications of bioluminescence and chemiluminescence. Luciferase, a key enzyme in this reaction, has been well characterized; however, the enzymes involved in the biosynthetic pathway of its substrate, luciferin, remains unsolved at present. To elucidate the luciferin metabolism, we performed a de novo transcriptome analysis using larvae of the firefly species, Luciola aquatilis. Here, a comparative analysis is performed with the model coleopteran insect Tribolium casteneum to elucidate the metabolic pathways in L. aquatilis. Based on a template luciferin biosynthetic pathway, combined with a range of protein and pathway databases, and various prediction tools for functional annotation, the candidate genes, enzymes, and biochemical reactions involved in luciferin metabolism are proposed for L. aquatilis. The candidate gene expression is validated in the adult L. aquatilis using reverse transcription PCR (RT-PCR). This study provides useful information on the bio-production of luciferin in the firefly and will benefit to future applications of the valuable firefly bioluminescence system.