Expanding anthropogenic activities, globally and in Egypt, have increased concentrations of heavy metals in surface and ground waters. Contamination of drinking water may threaten public health. In the present study, the concentrations of 10 heavy metals were analyzed from natural springs (6) and drilled wells (10) in the Nubian Sandstone Aquifer of the El-Farafra Oasis and the White Desert National Park, Egypt. The average concentrations of heavy metals were in most cases below critical values of the WHO drinking water standard, except for Fe and Mn (average values were 495 and 107 µg·L−1, respectively). There is a surface circulation that develops within limestone (Post-Nubian Aquifer System—PNAS) and feeds the springs, while the water present in the wells (at least for the deeper ones) comes from the ferruginous sandstone (Nubian Sandstone Aquifer System—NSAS). This double circulation could account for the differences in the EC and TDS values (typical of a circulation in limestone-type aquifers for springs) and the Fe and Mn enrichment coming from the ferruginous sandstone of the NSAS. The average chronic daily intake (CDI) values for heavy metals in the study area are listed in decreasing order in the following: Fe > Mn > Zn > Co > Ni > Cr > As > Pb > Co > Cd. The total hazard quotient (HQtotal = HQoral + HQdermal) and Hazard Index (HI) values calculated for different heavy metals were well below the acceptable limit, indicating no significant non-carcinogenic health risks to the residents of both areas via oral and dermal absorption of drinking water. Furthermore, the results obtained for the total risk to human health showed that oral ingestion is the major pathway. Carcinogenic risk analysis indicated that the Incremental Lifetime Cancer Risk (ILCR) values for Pb, Cd, Ni, and Cr were well below the acceptable limits.
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