Ferrichrome Analogs Research Articles

The Ferrichrome Uptake Pathway inPseudomonas aeruginosaInvolves an Iron Release Mechanism with Acylation of the Siderophore and Recycling of the Modified Desferrichrome

The uptake of iron into Pseudomonas aeruginosa is mediated by two major siderophores produced by the bacterium, pyoverdine and pyochelin. The bacterium is also able of utilize several heterologous siderophores of bacterial or fungal origin. In this work, we have investigated the iron uptake in P. aeruginosa PAO1 by the heterologous ferrichrome siderophore. (55)Fe uptake assays showed that ferrichrome is transported across the outer membrane primarily (80%) by the FiuA receptor and to a lesser extent (20%) by a secondary transporter. Moreover, we demonstrate that like in the uptake of ferripyoverdine and ferripyochelin, the energy required for both pathways of ferrichrome uptake is provided by the inner membrane protein TonB1. Desferrichrome-(55)Fe uptake in P. aeruginosa was also dependent on the expression of the permease FiuB, suggesting that this protein is the inner membrane transporter of the ferrisiderophore. A biomimetic fluorescent analogue of ferrichrome, RL1194, was used in vivo to monitor the kinetics of iron release from ferrichrome in P. aeruginosa in real time. This dissociation involves acylation of ferrichrome and its biomimetic analogue RL1194 and recycling of both modified siderophores into the extracellular medium. FiuC, an N-acetyltransferase, is certainly involved in this mechanism of iron release, since its mutation abolished desferrichrome-(55)Fe uptake. The acetylated derivative reacts with iron in the extracellular medium and is able to be taken up again by the cells. All these observations are discussed in light of the current knowledge concerning ferrichrome uptake in P. aeruginosa and in Escherichia coli.

Iron Chelation Equilibria, Redox, and Siderophore Activity of a Saccharide Platform Ferrichrome Analogue

A complete characterization of the aqueous solution Fe(III) and Fe(II) coordination chemistry of a saccharide-based ferrichrome analogue, 1-O-methyl-2,3,6-tris-O-[4-(N-hydroxy-N-ethylcarbamoyl)-n-butyryl]-alpha-D-glucopyranoside (H3LN236), is reported including relevant thermodynamic parameters and growth promotion activity with respect to both Gram-negative and Gram-positive bacterial strains. The saccharide platform is an attractive backbone for the design and synthesis of ferrichrome analogues because of its improved water solubility and hydrogen-bonding capabilities, which can potentially provide favorable receptor recognition and biological activity. The ligand deprotonation constants (pKa values), iron complex (FeIII(LN236) and FeII(LN236)1-) protonation constants (KFeHxL-236-N), overall Fe(III) and Fe(II) chelation constants (beta110), and aqueous solution speciation were determined by spectrophotometric and potentiometric titrations, EDTA competition equilibria, and cyclic voltammetry. Log betaIII110 = 31.16 and pFe = 26.1 for FeIII(LN236) suggests a high affinity for Fe(III), which is comparable to or greater than ferrichrome and other ferrichrome analogues. The E1/2 for the FeIII(LN236)/FeII(LN236)1- couple was determined to be -454 mV (vs NHE) from quasi-reversible cyclic voltammograms at pH 9. Below pH 6.5, the E1/2 shifts to more positive values and the pH-dependent E1/2 profile was used to determine the FeII(LN236)1- protonation constants and overall stability constant log betaII110 = 11.1. A comparative analysis of similar data for an Fe(III) complex of a structural isomer of this exocyclic saccharide chelator (H3LR234), including strain energy calculations, allows us to analyze the relative effects of the pendant arm position and hydroxamate moiety orientation (normal vs retro) on overall complex stability. A correlation between siderophore activity and iron coordination chemistry of these saccharide-hydroxamate chelators is made.

Fe(III) coordination properties of a new saccharide-based exocyclic trihydroxamate analogue of ferrichrome.

The coordination chemistry of a saccharide-based ferrichrome analogue, 1-O-methyl-2,3,4-tris-O-[4-(N-hydroxy-N-methylcarbamoyl)-n-butyrate]-alpha-d-glucopyranoside (H(3)L), is reported, along with its pK(a) values, Fe(III) and Fe(II) chelation constants, and aqueous-solution speciation as determined by spectrophotometric and potentiometric titration techniques. The use of a saccharide platform to synthesize a hexadentate trihydroxamic acid chelator provides some advantages over other approaches to ferrichrome models, including significant water solubility and hydrogen-bonding capability of the backbone that can potentially provide favorable receptor recognition and biological activity. The pK(a) values for the hydroxamate moieties were found to be similar to those of other trihydroxamates. Proton-dependent Fe(III)-H(3)L and Fe(II)-H(3)L equilibrium constants were determined using a model involving the sequential protonation of the iron(III)- and iron(II)-ligand complexes. These results were used to calculate the formation constants, log beta(110) = 31.86 for Fe(III)L and 12.1 for Fe(II)L(-). The calculated pFe value of 27.1 indicates that H(3)L possesses an Fe(III) affinity comparable to or greater than those of ferrichrome and other ferrichrome analogues and is thermodynamically capable of removing Fe(III) from transferrin. E(1/2) for the Fe(III)L/Fe(II)L(-) couple was determined to be -436 mV from quasi-reversible cyclic voltammograms at pH = 9, and the pH-dependent E(1/2) profile was used to determine the Fe(II)L(-) protonation constants.

Synthesis and evaluation of iron chelators with masked hydrophilic moieties.

Synthetic iron chelators based on the natural siderophore ferrichrome have previously been shown to bind Fe(III) with high affinity (pKf > 27) and have shown no toxicity to mammalian cell cultures in vitro. A new class of lipophilic ferrichrome analogues carrying acetoxymethyl ester moieties has been synthesized. We have shown that these molecules penetrate rapidly through cell membranes and turn highly hydrophilic while inside the cells, upon esterase mediated hydrolysis of the lipophilic termini. The intracellular retention was visualized by labeling these analogues with a fluorescent naphthalic diimide probe. The prohydrophilic iron chelators have been shown to inhibit the metal-catalyzed intracellular formation of reactive oxygen species with high effectivity, and preliminary results suggest these molecules to be potent antimalarial agents.

Practical Synthesis of Hydroxamate-Derived Siderophore Components by an Indirect Oxidation Method and Syntheses of a DIG−Siderophore Conjugate and a Biotin−Siderophore Conjugate

A practical large-scale synthesis of hydroxamate-derived siderophore components (30 and 40) that utilizes an efficient indirect oxidation method is described and applied to the syntheses of nonradioactive labeled siderophores. Oxidation of imines derived from l-ornithine (17) and its tripeptide (19) afforded oxaziridines that were isomerized to stable nitrones (16 and 18). Acid-catalyzed hydrolysis of nitrones provided hydroxylamines that were converted to the desired hydroxamic acids (30 and 40) suitable for constructing siderophore−drug conjugates (2). The entire synthetic sequence required no chromatographic separation. DIG- and biotin-labeled ferrichrome analogues designed to detect and isolate ferrichrome receptors in various microbes were also synthesized.

Iron uptake in Ustilago maydis: studies with fluorescent ferrichrome analogues

Iron uptake by the phytopathogenic fungus Ustilago maydis was studied using synthetic biomimetic ferrichrome analogues and their fluorescently labelled derivatives as structural and dynamic probes, respectively. The use of structurally distinct analogues enabled determination of the structural requirements for recognition by the fungal iron-uptake system. The application of fluorescently labelled derivatives which convert from a non-fluorescent to a fluorescent state upon iron (III) release enabled monitoring of iron uptake in real time both fluorimetrically and microscopically. Different rates of 55Fe uptake were found for two structurally distinct synthetic analogues, B9 and B5, which differ in their amino acid building blocks. B9 mediated uptake of 55Fe at a higher rate than B5. The behaviour of the fluorescent derivatives B9-Ant (anthracene-labelled B9) and B5-Ant (anthracene-labelled B5) paralleled that of their non-labelled precursors. Exposure of fungal cells to B9-Ant led to a higher increase of fluorescence in the medium than exposure to B5-Ant, indicating a more effective iron uptake from B9-Ant. By using fluorescence microscopy it was possible to trace the label of B9-Ant. Fluorescence was localized in regularly shaped vesicles in the treated cells. The rate of fluorescence appearance within the cells lagged behind the rate of iron uptake, suggesting use of the siderophores for iron storage.

Fluorescently-Labeled Ferrichrome Analogs as Probes for Receptor-Mediated, Microbial Iron Uptake

Biomimetic analogs 1 of the microbial siderophore (iron carrier) ferrichrome were labeled with a fluorescent marker at a site which does not interfere with iron binding or receptor recognition to provide iron(III) carriers 5 and 10 (Figure 1). These carriers were built from a tetrahedral carbon as an anchor which was symmetrically extended by three converging iron-binding chains and a single, exogenous anthracenyl residue. Carriers 5 varied in the nature of the amino acids (G = glycyl, A = alanyl and L = leucyl) linking the anchor with the iron-binding hydroxamate groups, while the alanyl derivative 10A differed from 5A in the spacer between the anthracenyl label and the anchor. Examination of these binders by 1H NMR confirmed that their conformations were analogous to those of the nonlabeled parent compounds. Titration experiments using UV/vis and fluorescence spectroscopy demonstrated the quenching of these compounds' fluorescence upon iron(III) loading and its recovery upon iron(III)'s release to a competing chelator. The quenching process fits the Perrin model for static quenching and was more efficient in derivatives 5, where the label could approach the iron-binding domain, than in derivative 10A, where the label's approach was prohibited. These data are in compliance with an intramolecular quenching process. In vivo examination of the labeled derivatives 5 with Pseudomonas putida as the indicator organism established that their behavior parallels that of the nonlabeled analogs 1, with the added benefit of signaling microbial activity by fluorescence emission. Thus incubation of P. putida with iron(III)-loaded (and therefore nonfluorescent) 5G caused buildup of the label's fluorescence in the culture medium. These observations provide direct evidence for a shuttle-mechanism of iron delivery where the fluorescent, iron-unloaded carrier is released to the medium. Inhibition of both phenomena by natural ferrichrome or NaN3 demonstrates the involvement of the microbial ferrichrome receptor and transport systems, respectively. On the other hand, 5A induced only modest iron(III) uptake by P. putida and failed to generate fluorescence in the culture medium, concurring with its action as an inhibitor. The fact that two strains of different Pseudomonas species did not respond to the ferrichrome analog 5G illustrates the specificity of these compounds. The performance of these carriers as structural and functional probes, paired with their high species specificity, encourage their consideration as diagnostic tools for the detection and identification of pathogenic bacteria and fungi.

Siderophore‐Mediated microbial iron(III) uptake: An exercise in chiral recognition

AbstractMolecular recognition by microbial receptors for siderophores [natural iron(III) carriers] is examined with synthetic iron(III) carriers as structural probes. The iron(III) carriers have been designed to reproduce the two essential features of the natural siderophores: the capability to form octahedral iron(III) binding cavities and to fit specific membrane receptors. Specifically, analogs of tripodal ferrichrome and linear ferrioxamines have been prepared and examined. The ferrichrome analogs rely on C3‐symmetric binders that are assembled from triscarboxylates as anchors, amino acids as bridges, and terminal hydroxamate groups as binding sites. The ferrioxamine analogs are based on linear assemblies of three identical monomers, each derived from a chiral amino acid. The deliberate use of animo acid residues as variable building blocks enables us to systematically modify the molecules' envelopes and the preferred absolute configuration of the iron(III) complexes until optimal performance is reached. Examination of the synthetic analogs in Pseudomonas putida demonstrates that the domains around the iron(III) center and their chiral sense dictate the extent of recognition by the membrane receptors. It is also shown that the synthetic siderophore analogs may be designed to either exert a broader, or a more narrow range of microbial activity than the natural siderophores. The implications of these findings are discussed in relation to the possible design of species‐specific antimicrobial agents. © 1993 Wiley‐Liss, Inc.

Enhanced iron (Fe) uptake by synthetic sidero‐phores in corn root

Abstract The objective of this study was to investigate whether a specific siderophore‐mediated iron uptake (possibly preceded by a reduction step) occurs in corn roots at a specific recognition site. The activity of ferrichrome analogs and ferrioxamine B, as iron carriers into corn roots, was studied. Stereo‐specific recognition of Fe‐ferrichrome analogs was observed during Fe uptake by corn roots. All ferrichrome analogs forming Fe(III) complexes of the same absolute configuration as does natural ferrichrome (cis), enhance Fe uptake, while their enantiomers lack biological activity. Gallium (III) failed to be taken up under analogous conditions, indicating that synthetic ferrichrome analogs mediate the Fe uptake via a specific reduction step. Within certain limits, binding energy of the chelator did not play a role in enhancing iron uptake. It is suggested that the iron uptake mechanism in corn roots involves binding to a specific chiral receptor in conjunction with a reductive process.

Multiple weak forces in ion-binding molecules

Abstract

Iron uptake and molecular recognition in Pseudomonas putida: receptor mapping with ferrichrome and its biomimetic analogs.

The presence of an Fe(3+)-ferrichrome uptake system in fluorescent Pseudomonas spp. was demonstrated, and its structural requirements were mapped in Pseudomonas putida with the help of biomimetic ferrichrome analogs. Growth tests, 55Fe3+ uptake, and competition experiments demonstrated that the synthetic L-alanine derivative B5 inhibits the action of ferrichrome but does not facilitate Fe3+ transport, while the enantiomeric D-Ala derivative B6 fails to compete with ferrichrome. Contraction of the molecule's envelope by replacing L-Ala by glycine provided a synthetic carrier, B9, which fully simulates ferrichrome as a growth promoter. Sodium azide inhibited 55Fe3+ uptake of the Gly derivative B9, suggesting an active transport process. These data demonstrate the chiral discrimination of the ferrichrome receptor and its sensitivity to subtle structural changes. They further confirm that receptor binding is a necessary but not sufficient condition for Fe3+ uptake to occur and suggest that binding to the receptor and transport proteins might rely on different recognition patterns.

Synthetic siderophores as biological probes

Synthetic molecules that mimic the properties of the natural siderophores promise to become powerful tools in the exploration of microbial iron(III)-uptake phenomena. Such molecules can serve as probes to (i) establish the essential structural requirements for biological action, (ii) trace alternative reaction pathways and (iii) compare receptors of different biological origins. In this article a series of synthetic ferrichrome analogs will be described. The strategy adopted for the design and synthesis of these compounds will be outlined and their properties in vitro and in vivo examined. The growth promotion activity of these compounds inArthrobacter flavescens is used to map the ferrichrome receptor surface. Their activities towardsZea mays allow us to trace the plants' reductive iron(III) uptake routes. Potential applications of modified ferrichrome analogs for the isolation of ferrichrome receptors, the generation of fluorescent probes and ultimately new families of antibiotic or antifungal agents, will also be indicated.

Synthetic ferrichrome analogues with growth promotion activity for Arthrobacterflavescens

Two families of trihydroxamic acid analogues of ferrichrome were chemically synthesized and tested for biological activity with Arthrobacter flavescens. Compounds using a tertiary amine as anchor showed little activity. Several compounds using tetrahedral carbon as anchor showed activity approaching or equalling that of the natural siderophore, ferrichrome. The biological activity is discussed in relation to physical and chemical properties of the analogues.

Retrohydroxamate ferrichrome, a biomimetic analogue of ferrichrome

A new synthetic analogue of ferrichrome, retrohydroxamate ferrichrome, has been examined for biological activity. Although spectroscopic evidence indicates that the analogue is a weaker Fe(III) chelator than ferrichrome, retrohydroxamate ferrichrome is indistinguishable from ferrichrome in its growth factor activity for Arthrobacter flavescens, and in its potency in antagonizing the antibiotic activity of albomyhcin against Bacillus subtilis. It is as active as ferrichrome as a siderophore for the fungus, Ustaligo sphaerogena. In contrast, desmethylretrohydroxamate ferrichrome shows no significant biological activity.

Nitrogen-15 nuclear magnetic resonance spectrum of alumichrome. Detection by a double resonance Fourier transform technique.

Alumichrome, the Al/sup 3 +/ analogue of ferrichrome, a ferric cyclohexapeptide, was enriched in /sup 15/N by growing the fungus Ustilago sphaerogena in a medium containing 99.5% /sup 15/N-ammonium acetate as the sole nitrogen source. The magnitude of the amide proton--nitrogen scalar coupling constant, obtained directly from the /sup 1/H NMR spectrum is correlated with the angular deviation from planarity at the peptide bond. The /sup 15/N amide resonanceees were measured indirectly by heteronuclear double resonance methods. The amide /sup 1/H NMR spectrum was obtained by Fourier transform at 220 MHz while the /sup 15/N resonances were irradiated selectively with low power near 22.3 MHz. The chemical shifts of the amide /sup 15/N resonances are sensitive to conformation and the responses to temperature and solvent changes provide excellent criteria for determining the spatial configuration of each -NH--CO-group within the peptide structure. An extension of the Fourier transform double resonance method, Fourier internuclear difference spectroscopy (FINDS), was tested successfully on the amide region of the unenriched peptide thus permitting detection of /sup 15/N resonances at natural abundance. The results suggest a large potential for the method.

Functional organization of the outer membrane of escherichia coli: phage and colicin receptors as components of iron uptake systems.

The functional interaction of outer membrane proteins of E. coli can be studied using phage and colicin receptors which are essential components of penetration systems. The uptake of ferric iron in the form of the ferrichrome complex requires the ton A and ton B functions in the outer membrane of E. coli. The ton A gene product is the receptor protein for phage T5 and is required together with the ton B function by the phages T1 and ø80 to infect cells and by colicin M and the antibiotic albomycin, a structural analogue of ferrichrome, to kill cells. The ton B function is necessary for the uptake of ferric iron complexed by citrate. Iron complexed by enterochelin is only transported in the presence of the ton B and feu functions. Cells which have lost the feu function are resistant to the colicins B, I or V while ton B mutants are resistant to all 3 colicins. The interaction of the ton A, ton B, and feu functions apparently permits quite different "substrates" to overcome the permeability barrier of the outer membrane. It was shown for ferrichrome dependent iron uptake that the complexing agent was not altered and could be used repeatedly. Only very low amounts of 3H-labeled ferrichrome were found in the cell. It is possible that the iron is mobilized in the membrane and that desferri-ferrichrome is released into the medium without having entered the cytoplasm. Growth on ferrichrome as the sole iron source was used to select revertants of T5 resistant ton A mutants. All revertants exhibited wild-type properties with the exception of partial revertants. In these 4 strains, as in the ton A mutants, the ton A protein was not detectable by SDS polyacrylamide gel electrophoreses of outer membranes. Albomycin resistant mutants were selected and shown to fall into 5 categories: 1) ton A; 2) ton B mutants; 3) mutants with no iron transport defects and normal ton A/ton B functions, which might be target site mutants; 4) mutants which were deficient in ferrichrome-mediated iron uptake but had normal ton A/ton B functions. We tentatively consider that the defect might be located in the active transport system of the cytoplasmic membrane; 5) a variety of mutants with the following general properties: most of them were resistant to colicin M, transported iron poorly, and, like ton B mutants, contained additional proteins in the outer membrane. The outer membrane protein patterns of wild-type and ton B mutant strains were compared by slab gel electrophoresis in an attempt to identify a ton B protein. It was observed that under most growth conditions, ton B mutants overproduced 3 proteins of molecular weights 74,000-83,000. In extracted, iron-deficient medium, both the wild-type and ton B mutant strains had similar large amounts of these proteins in their outer membranes. The appearance of these proteins was suppressed by excess iron in both wild-type and mutant. From this evidence it is apparent that the proteins appear as a response to low intracellular iron rather than being controlled by the ton B gene...

Evidence for common binding sites for ferrichrome compounds and bacteriophage phi 80 in the cell envelope of Escherichia coli

Mutants ton A and ton B of Escherichia coli K12, known to be resistant to bacteriophage phi80, were found to be insensitive as well to albomycin, an analogue of the specific siderochrome ferrichrome. Ferrichrome at micromolar concentrations strongly inhibited plaque production by phi80. Preincubation with ferrichrome did not inactivate the phage. At a concentration at which ferrichrome allowed 90% inhibition of plaque formation, the chromium analogue of ferrichrome showed no detectable activity. Similarly, ethylenediaminetetraacetic acid, ferrichrome A, and certain siderochromes structurally distinct from ferrichrome, such as ferrioxamine B, schizokinen, citrate, and enterobactin, did not show detectable inhibitory activity. However, rhodotorulic acid showed moderate activity. A host range mutant of phi80, phi80h, was also inhibited by ferrichrome, as was a hybrid of phage lambda possessing the host range of phi80. However, phage lambdacI- and a hybrid of phi80 possessing the host range of lambda were not affected by ferrichrome. Finally, ferrichrome and chromic deferriferrichrome were shown to inhibit adsorption of phi80 to sensitive cells, ferrichrome giving 50% inhibition of adsorption at a minimal concentration of 8 nM. It is suggested that a component of the ferrichrome uptake system may reside in the outer membrane of E. coli K12 and may also function as a component of the receptor site for bacteriophage phi80, and that ferrichrome inhibition of the phage represents a competition for this common site.

The Solution Conformation of the Ferrichromes: IV. pH DEPENDENCE OF THE INDIVIDUAL SLOW AMIDE HYDROGEN-DEUTERIUM EXCHANGE IN ALUMICHROME

Abstract The kinetics of hydrogen-deuterium exchange for the four individual protected amides of alumichrome, the Al3+ analogue of ferrichrome, have been studied by proton magnetic resonance. In the range 3 l pD l 7 the exchange rates are relatively invariant. A tighter binding to the metal as the pD is raised results in a conformational stability gain, which compensates for the known base catalysis of the intrinsic amide hydrogen exchange within this pD range. The analysis of the exchange kinetic data versus temperature within the framework of the absolute reaction rate theory yields the enthalpy (ΔH†) and entropy (ΔS†) contributions to the free energy of activation (ΔF†). Depending on the particular amide, ΔH† and ΔS† appear to vary over wider ranges than does ΔF†. On the average it is found that raising the pD from ∼3 to ∼7 increases ΔH† while decreasing ΔS†. It is proposed that while conformational fluctuations are of importance at low pD, at neutrality the exchange of certain amides might proceed through a higher energy barrier without significant exposure to the solvent.

The Solution Conformation of the Ferrichromes: V. THE HYDROGEN EXCHANGE KINETICS OF FERRICHROME ANALOGUES; THE CONFORMATIONAL STATE OF THE PEPTIDES

Abstract The slow amide hydrogen-deuterium exchanges were studied in the ferrichrome analogues gallichrome, alumicrocin, alumichrysin, and alumichrome A at pD 5.14. Substitution of Ga3+ for Al3+ increased the exchange rates, presumably because of a diminished binding affinity of the peptide for the heavier metal ion. An opposite kinetic effect was found upon successive l-seryl-for-glycyl substitutions in the series alumichrome, alumicrocin, and alumichrysin. It is suggested that seryl side chain steric and solvation pressures result in pronounced effects on the peptide backbone conformational stability. Introduction of negative charge, as in alumichrome A, increased the exchange rates, presumably by shifting the parabolic rate-pD curve towards higher pD. ΔH† and ΔS† contributions to the activation free energy were calculated from Eyring plots. The magnitude of the kinetic parameters allows an estimate of the relative contributions of steric shielding and hydrogen bonding to the stability of each slow amide in the different analogues. Since these peptides have essentially identical solution conformations, this study clearly shows that it is insufficient to describe the solution conformation of a peptide without referring, at the same time, to its stability in such a conformation. The concept of conformational state is thus emphasized.