Abstract: The anaerobic treatability and methane generation potential of three altered cotton wastes namely, cotton stalks, cotton seed hull and cotton oil cake remained determined in batch reactors. In addition, the effects of nutrient and trace metal supplementation were similarly investigated. The conversion of organics of cotton stem into bioenergy could serve the dual part of renewable energy production and waste reduction. Composition analysis demonstrated that cotton stem is a suitable feedstock for both bioethanol and biogas production. Anaerobic digestion of cotton stem attained 40.35% total biogas with 12.76% increased net CH4 volume compared to co-digestion of cotton stem with buffalo dung. Chopped cotton waste was considered as prospected substrate for biogas production. Cotton stalk was used gradually to exchange gobar content as substrate. During the study of four months the digester performed well till 90% feeding of cotton waste substrate. The maximum biogas generation detected was 1.3 m3 ; this shows that chopped cotton wastehas the potential to generate biogas. However, the digester was choked repeatedly and the concern of repetitive chocking of digester needs to be addressed.