Fe-NO Bond Research Articles

In situ injectable hydrogel encapsulating Mn/NO-based immune nano-activator for prevention of postoperative tumor recurrence

Postoperative tumor recurrence remains a predominant cause of treatment failure. In this study, we developed an in situ injectable hydrogel, termed MPB-NO@DOX + ATRA gel, which was locally formed within the tumor resection cavity. The MPB-NO@DOX + ATRA gel was fabricated by mixing a thrombin solution, a fibrinogen solution containing all-trans retinoic acid (ATRA), and a Mn/NO-based immune nano-activator termed MPB-NO@DOX. ATRA promoted the differentiation of cancer stem cells, inhibited cancer cell migration, and affected the polarization of tumor-associated macrophages. The outer MnO2 shell disintegrated due to its reaction with glutathione and hydrogen peroxide in the cytoplasm to release Mn2+ and produce O2, resulting in the release of doxorubicin (DOX). The released DOX entered the nucleus and destroyed DNA, and the fragmented DNA cooperated with Mn2+ to activate the cGAS-STING pathway and stimulate an anti-tumor immune response. In addition, when MPB-NO@DOX was exposed to 808 nm laser irradiation, the Fe-NO bond was broken to release NO, which downregulated the expression of PD-L1 on the surface of tumor cells and reversed the immunosuppressive tumor microenvironment. In conclusion, the MPB-NO@DOX + ATRA gel exhibited excellent anti-tumor efficacy. The results of this study demonstrated the great potential of in situ injectable hydrogels in preventing postoperative tumor recurrence.

Role of distal arginine residue in the mechanism of heme nitrite reductases.

Heme nitrite reductases reduce NO2- by 1e-/2H+ to NO or by 6e-/8H+ to NH4+ which are key steps in the global nitrogen cycle. Second-sphere residues, such as arginine (with a guanidine head group), are proposed to play a key role in the reaction by assisting substrate binding and hydrogen bonding and by providing protons to the active site for the reaction. The reactivity of an iron porphyrin with a NO2- covalently attached to a guanidinium arm in its 2nd sphere was investigated to understand the role of arginine residues in the 2nd sphere of heme nitrite reductases. The presence of the guanidinium residue allows the synthetic ferrous porphyrin to reduce NO2- and produce a ferrous nitrosyl species ({FeNO}7), where the required protons are provided by the guanidinium group in the 2nd sphere. However, in the presence of additional proton sources in solution, the reaction of ferrous porphyrin with NO2- results in the formation of ferric porphyrin and the release of NO. Spectroscopic and kinetic data indicated that re-protonation of the guanidine group in the 2nd sphere by an external proton source causes NO to dissociate from a ferric nitrosyl species ({FeNO}6) at rates similar to those observed for enzymatic sites. This re-protonation of the guanidine group mimics the proton recharge mechanism in the active site of NiR. DFT calculations indicated that the lability of the Fe-NO bond in the {FeNO}6 species is derived from the greater binding affinity of anions (e.g. NO2-) to the ferric center relative to neutral NO due to hydrogen bonding and electrostatic interaction of these bound anions with the protonated guanidium group in the 2nd sphere. The reduced {FeNO}7 species, once formed, is not affected significantly by the re-protonation of the guanidine residue. These results provide direct insight into the role of the 2nd sphere arginine residue present in the active sites of heme-based NiRs in determining the fate of NO2- reduction. Specifically, the findings using the synthetic model suggest that rapid re-protonation of these arginine residues may trigger the dissociation of NO from the {FeNO}6, which may also be the case in the protein active site.

Exploring the Limits of Dative Boratrane Bonding: Iron as a Strong Lewis Base in Low-Valent Non-Heme Iron-Nitrosyl Complexes.

We previously reported the synthesis and preliminary characterization of a unique series of low-spin (ls) {FeNO}8-10 complexes supported by an ambiphilic trisphosphineborane ligand, [Fe(TPB)(NO)]+/0/-. Herein, we use advanced spectroscopic techniques and density functional theory (DFT) calculations to extract detailed information as to how the bonding changes across the redox series. We find that, in spite of the highly reduced nature of these complexes, they feature an NO+ ligand throughout with strong Fe-NO π-backbonding and essentially closed-shell electronic structures of their FeNO units. This is enabled by an Fe-B interaction that is present throughout the series. In particular, the most reduced [Fe(TPB)(NO)]- complex, an example of a ls-{FeNO}10 species, features a true reverse dative Fe → B bond where the Fe center acts as a strong Lewis-base. Hence, this complex is in fact electronically similar to the ls-{FeNO}8 system, with two additional electrons "stored" on site in an Fe-B single bond. The outlier in this series is the ls-{FeNO}9 complex, due to spin polarization (quantified by pulse EPR spectroscopy), which weakens the Fe-NO bond. These data are further contextualized by comparison with a related N2 complex, [Fe(TPB)(N2)]-, which is a key intermediate in Fe(TPB)-catalyzed N2 fixation. Our present study finds that the Fe → B interaction is key for storing the electrons needed to achieve a highly reduced state in these systems, and highlights the pitfalls associated with using geometric parameters to try to evaluate reverse dative interactions, a finding with broader implications to the study of transition metal complexes with boratrane and related ligands.

Electronic Structure of Neutral and Anionic Iron-Nitrosyl Corrole. A Multiconfigurational and Density Matrix Renormalization Group Investigation.

An elaborate study with multireference second-order perturbation theory has been performed to elucidate the electronic structure and relative energy of three relevant states of FeNO corroles, namely the S = 0 ground state, the lowest S = 1 state, and the anion S = 1/2 state. On the basis of CASSCF and DMRG calculations with an active space including up to 37 orbitals, the electronic structure of the ground state was analyzed, with special emphasis on the diradical nature of the Fe-corrole and Fe-NO bonds. The results essentially confirm an earlier suggestion from B3LYP of a non-innocent corrole•2- bound to an {FeNO}7 unit, although the contribution of diradical character to the iron-corrole bond is found to be limited to 35%. This limited diradical character explains the high relative energy (16.5 kcal/mol) of the corresponding triplet state, where the corrole•2- is ferromagnetically coupled to the S = 1/2 {FeNO}7 unit. Consistent with experimental findings, reduction is found to take place at the corrole ligand, with a calculated electron affinity of 52.5 kcal/mol. The results obtained from the correlated calculations were also compared to DFT with a broad range of functionals.

Structure and reactivity of chlorite dismutase nitrosyls

Ferric nitrosyl ({FeNO}6) and ferrous nitrosyl ({FeNO}7) complexes of the chlorite dismutases (Cld) from Klebsiella pneumoniae and Dechloromonas aromatica have been characterized using UV–visible absorbance and Soret-excited resonance Raman spectroscopy. Both of these Clds form kinetically stable {FeNO}6 complexes and they occupy a unique region of ν(Fe–NO)/ν(N–O) correlation space for proximal histidine liganded heme proteins, characteristic of weak Fe–NO and N–O bonds. This location is attributed to admixed FeIII–NO character of the {FeNO}6 ground state. Cld {FeNO}6 complexes undergo slow reductive nitrosylation to yield {FeNO}7 complexes. The effects of proximal and distal environment on reductive nitroylsation rates for these dimeric and pentameric Clds are reported. The ν(Fe–NO) and ν(N–O) frequencies for Cld {FeNO}7 complexes reveal both six-coordinate (6c) and five-coordinate (5c) nitrosyl hemes. These 6c and 5c forms are in a pH dependent equilibrium. The 6c and 5c {FeNO}7 Cld frequencies provided positions of both Clds on their respective ν(Fe–NO) vs ν(N–O) correlation lines. The 6c {FeNO}7 complexes fall below (along the ν(Fe–NO) axis) the correlation line that reports hydrogen-bond donation to NNO, which is consistent with a relatively weak Fe–NO bond. Kinetic and spectroscopic evidence is consistent with the 5c {FeNO}7 Clds having NO coordinated on the proximal side of the heme, analogous to 5c {FeNO}7 hemes in proteins known to have NO sensing functions.

Stable Ferrous Mononitroxyl {FeNO}8 Complex with a Hindered Hydrotris(pyrazolyl)borate Coligand: Structure, Spectroscopic Characterization, and Reactivity Toward NO and O2.

The iron(II)-nitroxyl complex [Fe(NO)(L3)] (1) (with L3- = a hindered hydrotris(pyrazolyl)borate ligand), a high-spin (hs)-{FeNO}8 complex in the Enemark-Feltham notation, is surprisingly stable and is the first of its kind that could be structurally characterized. We further studied this compound using a variety of spectroscopic methods. These results indicate a hs iron(II) center with a bound 3NO- ligand where the spins are antiferromagnetic coupled ( St = 1). Vibrational data show that this complex has a very strong Fe-NO bond. DFT calculations support this result and link it to very strong π-donation from the 3NO- ligand to the iron(II) center. Furthermore, a very unusual equilibrium between the hs-{FeNO}8 complex and a dinitrosyl iron complex (DNIC) of {Fe(NO)2}9 type is observed. The O2 reactivity of the complex is finally reported.

Insight into chalcogenolate-bound {Fe(NO)2}9 dinitrosyl iron complexes (DNICs): covalent character versus ionic character.

The synthesis, characterization and transformation of the thermally unstable {Fe(NO)2}9 dinitrosyl iron complex (DNIC) [(OMe)2Fe(NO)2]- (2) were investigated. The {Fe(NO)2}9 DNIC 2 characterized by single-crystal X-ray diffraction is exclusively stabilized by the weak intermolecular [Fe(OMe)2(K+)] interactions (O(3)K(1) and O(4)K(1) distances of 2.818(3) and 2.810(3) Å, respectively). The binding affinity of chalcogenolate-containing ligands toward the {Fe(NO)2}9 motif follows the series [SEt]- > [SPh]- > [OPh]- > [OMe]-, which is dictated by the synergistic cooperation of the electron-donating order ([SEt]- > [SPh]- > [OPh]-) and the soft-hard order (from soft to hard, [SEt]- ∼ [SPh]- > [OPh]- > [OMe]-). In comparison with the XAS Fe K-edge pre-edge energy of {Fe(NO)2}9 [(RS)2Fe(NO)2]- (R = Ph (4), Et (5)) and [(PhO)2Fe(NO)2]- (6) DNICs falling within the reported range of 7113.4-7113.9 eV, the distinctive pre-edge energy of 7114.2 eV exhibited by complex 2 suggests that the electronic structure of {Fe(NO)2}9 DNIC 2 may be qualitatively described as a {FeIII(NO-)2}9 electronic structure induced by the dominant ionic character of Fe-OMe bonds, instead of the resonance hybrids of {FeII(NO-)(˙NO)}9 and {FeIII(NO-)2}9 electronic structures induced by the dominant metal-ligand covalency of {Fe(NO)2}9 DNICs 4-6. As shown in TD-DFT computation, the increased population of NO ligands in MO 125β (45.1% NO) attenuating the OMe-induced polarization imposed on the Fe center through the delocalized covalent nature of Fe-NO bonds supports the lower/synergistic NO/OMe → Fe charge transfer energy (1216 nm) observed in the solid-state UV-vis spectrum of complex 2 compared to those (1140 nm) of complexes 4-6.

Unusual Synthetic Pathway for an {Fe(NO)2}(9) Dinitrosyl Iron Complex (DNIC) and Insight into DNIC Electronic Structure via Nuclear Resonance Vibrational Spectroscopy.

Dinitrosyl iron complexes (DNICs) are among the most abundant NO-derived cellular species. Monomeric DNICs can exist in the {Fe(NO)2}(9) or {Fe(NO)2}(10) oxidation state (in the Enemark-Feltham notation). However, experimental studies of analogous DNICs in both oxidation states are rare, which prevents a thorough understanding of the differences in the electronic structures of these species. Here, the {Fe(NO)2}(9) DNIC [Fe(dmp)(NO)2](OTf) (1; dmp = 2,9-dimethyl-1,10-phenanthroline) is synthesized from a ferrous precursor via an unusual pathway, involving disproportionation of an {FeNO}(7) complex to yield the {Fe(NO)2}(9) DNIC and a ferric species, which is subsequently reduced by NO gas to generate a ferrous complex that re-enters the reaction cycle. In contrast to most {Fe(NO)2}(9) DNICs with neutral N-donor ligands, 1 exhibits high solution stability and can be characterized structurally and spectroscopically. Reduction of 1 yields the corresponding {Fe(NO)2}(10) DNIC [Fe(dmp)(NO)2] (2). The Mössbauer isomer shift of 2 is 0.08 mm/s smaller than that of 1, which indicates that the iron center is slightly more oxidized in the reduced complex. The nuclear resonance vibrational spectra (NRVS) of 1 and 2 are distinct and provide direct experimental insight into differences in bonding in these complexes. In particular, the symmetric out-of-plane Fe-N-O bending mode is shifted to higher energy by 188 cm(-1) in 2 in comparison to 1. Using quantum chemistry centered normal coordinate analysis (QCC-NCA), this is shown to arise from an increase in Fe-NO bond order and a stiffening of the Fe(NO)2 unit upon reduction of 1 to 2. DFT calculations demonstrate that the changes in bonding arise from an iron-centered reduction which leads to a distinct increase in Fe-NO π-back-bonding in {Fe(NO)2}(10) DNICs in comparison to the corresponding {Fe(NO)2}(9) complexes, in agreement with all experimental findings. Finally, the implications of the electronic structure of DNICs for their reactivity are discussed, especially with respect to N-N bond formation in NO reductases.

Heme-nitrosyls: electronic structure implications for function in biology.

The question of why mammalian systems use nitric oxide (NO), a potentially hazardous and toxic diatomic, as a signaling molecule to mediate important functions such as vasodilation (blood pressure control) and nerve signal transduction initially perplexed researchers when this discovery was made in the 1980s. Through extensive research over the past two decades, it is now well rationalized why NO is used in vivo for these signaling functions, and that heme proteins play a dominant role in NO signaling in mammals. Key insight into the properties of heme-nitrosyl complexes that make heme proteins so well poised to take full advantage of the unique properties of NO has come from in-depth structural, spectroscopic, and theoretical studies on ferrous and ferric heme-nitrosyls. This Account highlights recent findings that have led to greater understanding of the electronic structures of heme-nitrosyls, and the contributions that model complex studies have made to elucidate Fe-NO bonding are highlighted. These results are then discussed in the context of the biological functions of heme-nitrosyls, in particular in soluble guanylate cyclase (sGC; NO signaling), nitrophorins (NO transport), and NO-producing enzymes. Central to this Account is the thermodynamic σ-trans effect of NO, and how this relates to the activation of the universal mammalian NO sensor sGC, which uses a ferrous heme as the high affinity "NO detection unit". It is shown via detailed spectroscopic and computational studies that the strong and very covalent Fe(II)-NO σ-bond is at the heart of the strong thermodynamic σ-trans effect of NO, which greatly weakens the proximal Fe-NHis (or Fe-SCys) bond in six-coordinate ferrous heme-nitrosyls. In sGC, this causes the dissociation of the proximally bound histidine ligand upon NO binding to the ferrous heme, inducing a significant conformational change that activates the sGC catalytic domain for the production of cGMP. This, in turn, leads to vasodilation and nerve signal transduction. Studies on ferrous heme-nitrosyl model complexes have allowed for a quantification of this thermodynamic σ-trans effect of NO, through the use of high-resolution crystal structures, binding constant studies, single-crystal vibrational spectroscopy and density functional theory (DFT) calculations. These studies have further identified the singly occupied molecular orbital (SOMO) of the NO complexes as the key MO that mediates the thermodynamic σ-trans effect of NO. In comparison to ferrous heme-nitrosyls, ferric heme-nitrosyls display thermodynamically much weaker Fe-NO bonds (from NO binding constants), but at the same time much stronger Fe-NO bonds in their ground states (from vibrational spectroscopy). Using spectroscopic investigations coupled to DFT calculations, this apparent contradiction has been rationalized with the involvement of at least three different electronic states in the binding/dissociation of NO to/from ferric hemes. This is of key significance for the release of NO from NO-producing enzymes like NOS, and further forms the basis for ferric hemes to serve as NO transporters in biological systems.

An exclusively organometallic {FeNO}(7) complex with tetracarbene ligation and a linear FeNO unit.

The iron(II) complex 1 of a macrocyclic tetracarbene binds NO to form a low-spin (S = (1)/2) {FeNO}(7) complex (2) with a linear FeNO unit and a short Fe-NO bond. IR, electron paramagnetic resonance, and Mössbauer spectroscopies as well as density functional theory calculations suggest some Fe(I)NO(+) character and reveal that the singly occupied molecular orbital of 2, resulting from the σ-antibonding interaction of Fe dz(2) and the NO lone pair, is largely iron-based. Reduction yields a quite stable {FeNO}(8) species (3); both 2 and 3 feature very low Mössbauer isomer shifts (∼0.0 mm·s(-1)).

Quantum-chemical study of the Fe(NO)2 fragment in the cation of mononuclear nitrosyl iron complex [Fe(SC(NH2)2)2(NO)2]Сl·H2O

Quantum-chemical study of the Fe(NO)2 fragment in the Fe(SC(NH2)2)2(NO)2+ cation of mononuclear nitrosyl iron complex has been performed using various approaches in the frame of density functional method. Both local (Bp86, PW91PW91, BLYP, TPSSTPSS), and hybrid (B3LYP, B3PW91, TPSSh) functionals were used in order to understand which of them are the most suitable for description of the electronic and molecular structures of cations of this type. Using NBO and AIM methods, main characteristics of the Fe(NO)2 fragment bonds were determined. In the Fe(NO)2 fragment of the complex π-interactions are strong, this being the reason of re-distribution of the electron density along Fe–N–O. However, the Fe–N bond in this complex differs from a common covalent bond because, according to some topological characteristics, it corresponds to the interaction with closed shells, while the ratio of contributions of kinetic and potential energy densities corresponds to covalent bonds. Local functionals overstate energy of the Fe–NO bond, this being due to the overestimation of the energy of orbital mixing of antibonding orbitals of the Fe–N and N–O bonds.

Synthesis, structure, NO-donor and redox activity of bis-(2-methylfuranethiolate)tetranitrosyl diiron

The new tetranitrosyl binuclear iron complex [Fe2(SС5H5O)2(NO)4] (I) has been synthesized by the reaction of aqueous solutions of anionic salts [Fе(S2O3)2(NO)2]3− and [SС5H5O]−. The latter one has been obtained by the reduction of methyl furfuryl disulfide by hydrazine hydrate in ethanol at T=25°C. The molecular and crystalline structure of I has been determined by X-ray method. The complex has binuclear structure of “μ-S” type with the distance between the iron atoms ∼2.70Å. In the crystalline structure shortened intermolecular contacts of the nitrosyl groups of the adjacent molecules are observed. The maximum amount of NO generated by I in 1% aqueous solution of dimethylsulfoxide (DMSO) is ∼5nM, and it reduces to zero in 8min after decomposition starts in anaerobic conditions at Т=25°С, pH 6.5. As follows from the method of natural bond orbital analysis (NBO analysis), complex I has rather strong FeNO bond, as compared to other NO donors. Using CVA method, the values of reduction potentials for I in an aprotic solvent have been determined, and the scheme for its reduction has been suggested.

Crystallographic characterization of the nitric oxide derivative of R-state human hemoglobin

Nitric oxide (NO) is a signaling agent that is biosynthesized in vivo. NO binds to the heme center in human hemoglobin (Hb) to form the HbNO adduct. This reaction of NO with Hb has been studied for many decades. Of continued interest has been the effect that the bound NO ligand has on the geometrical parameters of the resulting heme-NO active site. Although the crystal structure of a T-state human HbNO complex has been published previously, that of the high affinity R-state HbNO derivative has not been reported to date. We have crystallized and solved the three-dimensional X-ray structure of R-state human HbNO to 1.90Å resolution. The differences in the FeNO bond parameters and H-bonding patterns between the α and β subunits contribute to understanding of the observed enhanced stability of the α(FeNO) moieties relative to the β(FeNO) moieties in human R-state HbNO.

Heme versus Non-Heme Iron-Nitroxyl {FeN(H)O}8 Complexes: Electronic Structure and Biologically Relevant Reactivity

Researchers have completed extensive studies on heme and non-heme iron-nitrosyl complexes, which are labeled {FeNO}(7) in the Enemark-Feltham notation, but they have had very limited success in producing corresponding, one-electron reduced, {FeNO}(8) complexes where a nitroxyl anion (NO(-)) is formally bound to an iron(II) center. These complexes, and their protonated iron(II)-NHO analogues, are proposed key intermediates in nitrite (NO2(-)) and nitric oxide (NO) reducing enzymes in bacteria and fungi. In addition, HNO is known to have a variety of physiological effects, most notably in the cardiovascular system. HNO may also serve as a signaling molecule in mammals. For these functions, iron-containing proteins may mediate the production of HNO and serve as receptors for HNO in vivo. In this Account, we highlight recent key advances in the preparation, spectroscopic characterization, and reactivity of ferrous heme and non-heme nitroxyl (NO(-)/HNO) complexes that have greatly enhanced our understanding of the potential biological roles of these species. Low-spin (ls) heme {FeNO}(7) complexes (S = 1/2) can be reversibly reduced to the corresponding {FeNO}(8) species, which are stable, diamagnetic compounds. Because the reduction is ligand (NO) centered in these cases, it occurs at extremely negative redox potentials that are at the edge of the biologically feasible range. Interestingly, the electronic structures of ls-{FeNO}(7) and ls-{FeNO}(8) species are strongly correlated with very similar frontier molecular orbitals (FMOs) and thermodynamically strong Fe-NO bonds. In contrast, high-spin (hs) non-heme {FeNO}(7) complexes (S = 3/2) can be reduced at relatively mild redox potentials. Here, the reduction is metal-centered and leads to a paramagnetic (S = 1) {FeNO}(8) complex. The increased electron density at the iron center in these species significantly decreases the covalency of the Fe-NO bond, making the reduced complexes highly reactive. In the absence of steric bulk, monomeric high-spin {FeNO}(8) complexes decompose rapidly. Notably, in a recently prepared, dimeric [{FeNO}(7)]2 species, we observed that reduction leads to rapid N-N bond formation and N2O generation, which directly models the reactivity of flavodiiron NO reductases (FNORs). We have also made key progress in the preparation and stabilization of corresponding HNO complexes, {FeNHO}(8), using both heme and non-heme ligand sets. In both cases, we have taken advantage of sterically bulky coligands to stabilize these species. ls-{FeNO}(8) complexes are basic and easily form corresponding ls-{FeNHO}(8) species, which, however, decompose rapidly via disproportionation and H2 release. Importantly, we recently showed that we can suppress this reaction via steric protection of the bound HNO ligand. As a result, we have demonstrated that ls-{FeNHO}(8) model complexes are stable and amenable to spectroscopic characterization. Neither ls-{FeNO}(8) nor ls-{FeNHO}(8) model complexes are active for N-N coupling, and hence, seem unsuitable as reactive intermediates in nitric oxide reductases (NORs). Hs-{FeNO}(8) complexes are more basic than their hs-{FeNO}(7) precursors, but their electronic structure and reactivity is not as well characterized.

Quantum chemical approaches to the explanation of differences in NO-donor activity of iron-sulfur nitrosyl complexes

The geometries and electronic structures of iron-sulfur nitrosyl complexes with azaheterocyclic thiols with μ-SCN bridging ligands, [Fe2(SCN4Ph)2(NO)4] (1) and [Fe2(SCN4Me)2(NO)4] (2), were calculated within the framework of the density functional theory (DFT) with the BP86, TPSS, B3LYP, and OPBE functionals in order to explain differences in their NO-donor activities. Chemical bonding in the complexes was analyzed using the NBO approach, according to Mulliken, and using the Voronoi scheme. NBO analysis of complex 1 revealed a strong interaction between orbitals of the lone electron pairs of the Fe atom and the antibonding orbitals of the Fe-N bond which leads to strengthening of the Fe-NO bond. In complex 2, the Fe-NO bond is more polar than in complex 1.

Direct Observation of the Low-Spin Fe(III)–NO(radical) Intermediate State during Rebinding of NO to Photodeligated Ferric Cytochrome c

Nitrosylated ferric heme is autoreduced readily to the more stable Fe(II)-NO adduct, but it is stabilized in NO-carrier heme proteins where maintaining the Fe(III) oxidation state is crucial for efficient NO delivery. Density functional theory calculations by Lehnert and co-workers have shown that a NO-bound ferric model heme has a low-spin (LS) Fe(III)-NO(radical) state that might be critical for efficient NO transport by NO-carrier heme proteins. Recently, the elusive LS Fe(III)-NO(radical) state was observed as an electronic intermediate state during geminate rebinding (GR) of NO to ferric myoglobin (Mb(III)). Cytochrome c (Cytc), a ubiquitous heme protein, is useful for generalizing the presence of the LS Fe(III)-NO(radical) state. Photoexcitation dynamics of NO-bound ferric Cytc (Cytc(III)NO) was probed after excitation of Cytc(III)NO in D2O solution at 294 K with a 575 nm pulse using femtosecond vibrational spectroscopy. The time-resolved spectra displayed several weak absorption bands in the 1900-1800 cm(-1) range and a dominant bleach at 1917 cm(-1), the position of the absorption at equilibrium. Two absorptions, with 37 cm(-1) isotope shift of (15)NO, shifted toward higher energy and narrowed with an average time constant of 8 ps, indicating that they arose from thermally and/or vibrationally excited NO in the ground electronic state of Cytc(III)NO. Three absorption bands, showing 33 cm(-1) isotope shift of (15)NO and peaked at 1865, 1836, and 1807 cm(-1), were assigned to the deligated NO residing in the interior of the protein, to the rebound Cytc(III)NO in the LS Fe(III)-NO(radical) state, and to the vibrationally excited NO of Cytc(III)NO in the LS Fe(III)-NO(radical) state, respectively. The quantum yield for NO deligation of Cytc(III)NO by a 575 nm photon was 0.8 ± 0.1. Most of the deligated NO showed non-exponential GR, and the GR kinetics was described by exp(-(t/7 ps)(0.7)). Every rebound Cytc(III)NO formed the LS Fe(III)-NO(radical) state that relaxed into the ground state, with the relaxation kinetics described by exp(-(t/2.5 ps)(0.7)). The GR of NO to ferric Cytc was as fast as the thermal relaxation of hot heme, and the relaxation of the rebound Cytc(III)NO in the intermediate LS Fe(III)-NO(radical) state was faster than the thermal relaxation of hot heme, generating the rebound Cytc(III)NO in a thermally excited ground electronic state. For both Cytc(III)NO and Mb(III)NO, the relaxation rate of the LS Fe(III)-NO(radical) state was similar to the upper rate limit of the domed-to-planar heme transition observed in NO-rebound ferrous-heme proteins, suggesting that the change in the Fe-NO bond length is coupled to the doming motion of the heme Fe.

Effect of Solvent Polarity on the Vibrational Dephasing Dynamics of the Nitrosyl Stretch in an FeII Complex Revealed by 2D IR Spectroscopy

The vibrational dephasing dynamics of the nitrosyl stretching vibration (ν(NO)) in sodium nitroprusside (SNP, Na2[Fe(CN)5NO]·2H2O) are investigated using two-dimensional infrared (2D IR) spectroscopy. The ν(NO) in SNP acts as a model system for the nitrosyl ligand found in metalloproteins which play an important role in the transportation and detection of nitric oxide (NO) in biological systems. We perform a 2D IR line shape study of the ν(NO) in the following solvents: water, deuterium oxide, methanol, ethanol, ethylene glycol, formamide, and dimethyl sulfoxide. The frequency of the ν(NO) exhibits a large vibrational solvatochromic shift of 52 cm(-1), ranging from 1884 cm(-1) in dimethyl sulfoxide to 1936 cm(-1) in water. The vibrational anharmonicity of the ν(NO) varies from 21 to 28 cm(-1) in the solvents used in this study. The frequency-frequency correlation functions (FFCFs) of the ν(NO) in SNP in each of the seven solvents are obtained by fitting the experimentally obtained 2D IR spectra using nonlinear response theory. The fits to the 2D IR line shape reveal that the spectral diffusion time scale of the ν(NO) in SNP varies from 0.8 to 4 ps and is negatively correlated with the empirical solvent polarity scales. We compare our results with the experimentally determined FFCFs of other charged vibrational probes in polar solvents and in the active sites of heme proteins. Our results suggest that the vibrational dephasing dynamics of the ν(NO) in SNP reflect the fluctuations of the nonhomogeneous electric field created by the polar solvents around the nitrosyl and cyanide ligands. The solute solvent interactions occurring at the trans-CN ligand are sensed through the π-back-bonding network along the Fe-NO bond in SNP.

Structure and properties of bis(1-phenyl-1h-tetrazole-5-thiolate)diiron tetranitrosyl

New tetranitrosyl binuclear iron complex [Fe2(SС7H5N4)2(NO)4] (I) has been synthesized by interaction of aqueous solutions of anionic salts [Fе(S2O3)2(NO)2]3− and [SС7H5N4]−. The latter one was synthesized by reduction of bis-(1-phenyl-1H-tetrazole-5-yl) disulfide with hydrazine hydrate in ethanol at T=25°C. Molecular and crystalline structure of I was determined by X-ray analysis; the complex has binuclear structure of “μ-SCN” type with ∼4.02Å between the iron atoms. Shortened О⋯О contacts (2.81Å) between the NO groups of similar type are observed. Parameters of Mössbauer spectrum for I are: isomer shift δFe=0.311(1) mm/s, quadrupole splitting ΔEQ=1.044(1) mm/s, line width Γ=0.267(1) mm/s at 85K. From SQUID magnetometry data, the temperature and field dependences of the magnetic moment of I are well described in the frame of a simple model of binuclear iron complex with magnetic centers S1=S2=½. In solution, binuclear structure of the complex remains, though the NO groups are non-equivalent. For solutions of I five-line hyperfine structure of spectrum (HFS) is observed, g-factor=2.03. For polycrystals of I, no HFS was observed due to averaged exchange interaction between the electron spins of adjacent complexes. In polycrystals of I, the number of spins per one binuclear complex is <2, this being the evidence of antiferromagnetic exchange interaction of unpaired electrons of two iron atoms. The average number of spins in crystals (0.65) and solutions (0.55) are close. The maximum amount of NO generated by I in 1% dimethylsulfoxide (DMSO) aqueous solution is ∼13.8nM, it halves in 8min after decomposition starts, and reaches ∼3.8nM in anaerobic conditions at Т=25°С, pH 7.0. This is due, according to quantum-chemical calculations, to the presence of a more stable FeNO bond in I than in its isostructural analog – nitrosyl iron complex with 1-methyltetrazole-5-yl (II).

Selective X-ray-induced NO photodissociation in haemoglobin crystals: evidence from a Raman-assisted crystallographic study

Despite their high physiological relevance, haemoglobin crystal structures with NO bound to haem constitute less than 1% of the total ligated haemoglobins (Hbs) deposited in the Protein Data Bank. The major difficulty in obtaining NO-ligated Hbs is most likely to be related to the oxidative denitrosylation caused by the high reactivity of the nitrosylated species with O(2). Here, using Raman-assisted X-ray crystallography, it is shown that under X-ray exposure (at four different radiation doses) crystals of nitrosylated haemoglobin from Trematomus bernacchii undergo a transition, mainly in the β chains, that generates a pentacoordinate species owing to photodissociation of the Fe-NO bond. These data provide a physical explanation for the low number of nitrosylated Hb structures available in the literature.

Conformationally Distinct Five-Coordinate Heme–NO Complexes of Soluble Guanylate Cyclase Elucidated by Multifrequency Electron Paramagnetic Resonance (EPR)

Soluble guanylate cyclase (sGC) is a heme-containing enzyme that senses nitric oxide (NO). Formation of a heme Fe-NO complex is essential to sGC activation, and several spectroscopic techniques, including electron paramagnetic resonance (EPR) spectroscopy, have been aimed at elucidating the active enzyme conformation. Of these, only EPR spectra (X-band ~9.6 GHz) have shown differences between low- and high-activity Fe-NO states, and these states are modeled in two different heme domain truncations of sGC, β1(1-194) and β2(1-217), respectively (Derbyshire et al., Biochemistry 2008, 47, 3892-3899). The EPR signal of the low-activity sGC Fe-NO complex exhibits a broad lineshape that has been interpreted as resulting from site-to-site inhomogeneity, and simulated using g strain, a continuous distribution about the principal values of a given g tensor. This approach, however, fails to account for visible features in the X-band EPR spectra as well as the g anisotropy observed at higher microwave frequencies. Herein we analyze X-, Q-, and D-band EPR spectra and show that both the broad lineshape and the spectral structure of the sGC EPR signal at multiple microwave frequencies can be simulated successfully with a superposition of only two distinct g tensors. These tensors represent different populations that likely differ in Fe-NO bond angle, hydrogen bonding, or the geometry of the amino acid residues. One of these conformations can be linked to a form of the enzyme with higher activity.