Agriculture In Japan Research Articles

Career Support and Its Effectiveness in Technical Intern Training Program for Farm Work Contracts: A Case Study of Japan Agricultural Cooperatives in Kagoshima Prefecture

Career Support and Its Effectiveness in Technical Intern Training Program for Farm Work Contracts: A Case Study of Japan Agricultural Cooperatives in Kagoshima Prefecture

Identification of multiple inter- and intra-genotype reassortment mammalian orthoreoviruses from Japanese black cattle in a beef cattle farm

Mammalian orthoreoviruses (MRVs), belonging to the genus Orthoreovirus in the family Spinareoviridae, possess a double-stranded RNA segmented genome. Due to the segmented nature of their genome, MRVs are prone to gene reassortment, which allows for evolutionary diversification. Recently, a genotyping system for each MRV gene segment was proposed based on nucleotide differences. In the present study, MRVs were isolated from the fecal samples of Japanese Black cattle kept on a farm in Japan. Complete genome sequencing and analysis of 41 MRV isolates revealed that these MRVs shared almost identical sequences in the L1, L2, L3, S3, and S4 gene segments, while two different sequences were found in the S1, M1, M2, M3, and S2 gene segments. By plaque cloning, at least six genetic constellation patterns were identified, indicating the occurrence of multiple inter- (S1 and M2) and intra- (M1, M3, and S2) reassortment events. This paper represents the first report describing multiple reassortant MRVs on a single cattle farm. These MRV gene segments exhibited sequence similarity to those of MRVs isolated from cattle in the U.S. and China, rather than to MRVs previously isolated in Japan. Genotypes consisting solely of bovine MRVs were observed in the L1, M1, and M2 segments, suggesting that they might have evolved within the cattle population.

Quantification of wildlife visits to pig farms via camera traps in Japan

Infectious diseases in livestock not only cause significant economic losses but also affect food security. Although wildlife may be involved in these infectious diseases by serving as reservoirs, research has primarily focused on livestock and related species. Moreover, while these species represent a potential threat in wildlife-borne infectious diseases, comprehensive surveys of the presence of various species are limited. In this study, we aimed to quantitatively investigate the occurrence of various mammals and birds at three pig farms in Japan. We conducted camera trap surveys from October 15, 2020, to March 24, 2022, and determined the relative abundance index inside and outside the sanitary control zone. Wild boar (Sus scrofa), sika deer (Cervus nippon), and Japanese serow (Capricornis crispus) were photographed only outside the sanitary control zone. In contrast, small and medium-sized mammals, such as feral cats (Felis catus), raccoons (Procyon lotor), and rodent species (Muridae), and birds, such as the rufous oriental turtle dove (Streptopelia orientalis) and crows of the genus Corvus, were photographed both inside and outside the sanitary control zone. This comprehensive quantitative evidence suggests that various mammals and birds may be in indirect contact with livestock, highlighting the need to improve biosecurity at livestock farms. Moreover, while fences are effective against large mammals, they are inefficient against small to medium-sized mammals and birds. Therefore, the results of this study provide important insights into enhancing biosecurity on livestock farms by strengthening physical fencing, disinfecting clothing and equipment, and complying with standards of hygiene management.

The Influence of Automated Harvest Robots in Japan on the Interest of TRPL IPB University Students in Improving the Welfare of Agriculture

This study investigates the impact of Automated Harvesting Robots on agriculture in Japan, examines the potential influence of TRPL IPB students' interest in these technologies on agricultural innovation in Indonesia, and explores the reactions of these students to the functionality of the robots. Automated Harvesting Robots have significantly transformed Japanese agriculture by improving efficiency, reducing labor costs, and addressing labor shortages. The interest of TRPL IPB students in these advanced tools indicates a promising avenue for fostering agricultural innovation in Indonesia, leveraging technological advancements to enhance local practices. Furthermore, the responses of these students to the functionality of Automated Harvesting Robots provide valuable insights into their perceptions and readiness to adopt such technologies. This study highlights the critical role of technological exchange and student engagement in advancing agricultural practices and innovation across regions.

Phytoseiid mites benefited from organic fertilization by increasing the population of Tyrophagus mites in apple orchards

This study explores sustainable agricultural practices by examining the role of organic materials in enhancing native predatory mites for controlling spider mites in apple orchards. Developing techniques to conserve indigenous natural enemies is vital for sustainable agricultural production. Phytoseiid mites can control spider mites, which are among the most significant pests in apple production. To conserve phytoseiid mite populations, it is important to identify alternative prey and to determine their role in phytoseiid mite proliferation. We demonstrated that the concurrent use of specific organic fertilizers and coconut husks can increase prey Tyrophagus mites, thereby enhancing phytoseiid mite density. Our research was conducted using sticky traps at the Miyagi Prefectural Agriculture and Horticulture Research Center in Japan. The occurrence of Tyrophagus mites was significantly correlated with the occurrence of phytoseiid mites in 2 years. In laboratory experiments, the use of organic fertilizers increased the density of Tyrophagus mites by 83 × within 4 weeks. Several species of phytoseiid mites were able to lay between 0.25 and 1.03 eggs per day per female by preying on Tyrophagus larvae. A 2-year field survey revealed that the use of organic fertilizers more than doubled the density of phytoseiid mites on apple leaves, likely through promoting Tyrophagus mite proliferation on the ground. These results highlight the potential of organic fertilizers not only to enhance soil nutrients, but also to boost phytoseiid mite populations, thereby contributing to more sustainable apple production.

Effect of low vacuum medium temperature drying on reduction of residual stress and correction of warp of Japanese cedar timber

Cryptomeria japonica (Japanese cedar) in Japan plantations are aging, and the main supply of timber in the market is shifting from small- and medium-diameter to large-diameter logs. The effective utilization of these logs has become an important issue in the timber industry. When producing timber-without-pith from large-diameter logs, an unavoidable warp occurs because of the release of residual stress within the logs. Utilizing high-temperature drying with a load on these timbers has achieved significant drying effects, and the residual stress-induced warp was corrected. However, high-temperature drying has drawbacks, such as high energy consumption and the potential for thermal degradation. We applied low-vacuum-medium-temperature drying (LVMT-drying, 10 days, 40 kPa, 80/55 °C (DB/WB)—90/65 °C (DB/WB)) with load (650 kgf/m2) to the stacked timber sawn from large-diameter logs to address these questions. When LVMT-drying was successful, residual stresses in timber-with-pith were reduced to nearly zero, and warps in timber-without-pith were reduced to less than 8 mm, i.e., below the Japan Agriculture Standard "Level 1" for 4000 mm timber, and the acceptance rate for "Level 1" increased from 45% (green timber) to 85% (treated timber) in the most successful sample. LVMT-drying is a practical drying method for timber from large-diameter logs because it is effective in reducing residual stress and correcting warps while shortening the treatment period and avoiding thermal degradation.

Development of a Discriminating Method for Pathogenic Bacteria that Cause Lactococcal Infections in Marine Fish Farms in Japan

Development of a Discriminating Method for Pathogenic Bacteria that Cause Lactococcal Infections in Marine Fish Farms in Japan

Culinary continuity in central Japan across the transition to agriculture

Rice and millet arrived in Western Japan from Korea around 3,000 years ago and spread eastwards across the archipelago in the next 700 years. However, the extent to which agriculture transformed traditional Jōmon hunter-gatherer-fisher communities is debated. Central Japan is a key area of study as remodelling of radiocarbon dates shows a slowdown in the dispersal rate of rice agriculture in this area. Here, we examine and compare the use of pottery by Final Jōmon and Early to Middle Yayoi communities in the Tōkai and the Central Highland regions of central Japan, using lipid residue analysis. Although the identification of specific biomarkers for rice remains elusive, an increase in the ratio of E/H C18 APAAs with the arrival of rice and millet indicates a potential change in plant processing and consumption. We were also able to identify biomarkers for broomcorn millet (miliacin) in both Final Jōmon and Yayoi pottery. However, evidence for millet consumption is sparse and in all cases was likely mixed with wild hunted and foraged foods. We conclude therefore that, despite the introduction of rice and millet agriculture in central Japan, pre-existing diets and culinary habits of Jōmon hunter-gatherers remain important.

Analysis of gut microbiota with cryptosporidiosis based on fecal condition in neonatal dairy calves on a farm in Japan

Cryptosporidiosis is a major cause of diarrhea and is associated with high morbidity in calves. Changes in the gut microbiota exacerbate diarrhea caused by Cryptosporidium parvum (C. parvum) infection in neonatal and weaned calves. However, information on the gut microbiota of neonatal calves with C. parvum infection is scarce, and research into the microbiome of calves is essential for developing preventive and therapeutic interventions. This study aimed to elucidate the gut microbiota of neonatal calves with cryptosporidiosis. We collected 31 fecal samples from 31 neonatal calves on a dairy farm with or without C. parvum antigen [CP(+) or CP(-)] using a kit and analyzed the differences in the microbiota between diarrheal (D) and normal (N) fecal samples with C. parvum infection based on the fecal score. The analyses revealed the α diversity indexes of fecal microbiota in CP(+)-N samples were higher than that in CP(+)-D samples. Megasophaera spp. and other rumen microbes were identified, and significantly associated with CP(+)-N samples compared with CP(+)-D samples by LEfSe analysis. We conclude that the specific gut microbiota could characterize fecal microbiota in calves with neonatal cryptosporidiosis without clinical symptoms.

Measurement of proviral load associated with the development of lymphocytosis in bovine leukaemia virus‐infected Holstein cattle at a dairy farm in Japan

AbstractWe monitored the bovine leukaemia virus (BLV) proviral load (PVL) in peripheral blood lymphocytes (PBLs) and the PBL counts in BLV‐infected cattle on a dairy farm in Japan to determine the changes in PVL with the progression of lymphocytosis. A total of 25 BLV‐infected Holstein cattle at a dairy farm were followed up from May 2015 (0 month) to April 2016 (11 months). PBL counts and PVL were measured three times in 25 cattle. Based on their PBL counts, five cattle with normal PBL (≤7500 cells/µL) at 0 month but high PBL (>7500 cells/µL) at 11 months were classified as the increased group. All cattle in the increased group showed increased PVL compared to asymptomatic aleukaemic carriers at 11 months. This study revealed increases in PVL with the progression of lymphocytosis, suggesting that cattle with progression of lymphocytosis should be segregated from BLV‐negative cattle as soon as possible.

Geographic Information System-Based Analysis of Reclaimable Idle Cropland for Agrivoltaics in Kansai, Japan: Enhancing Energy and Food Security

Decarbonization and idle cropland reclaiming pose critical policy challenges. Agrivoltaic systems (AVSs), which merge agriculture and photovoltaics, offer a promising solution by reducing land use conflicts between agriculture and energy production. This study develops a GIS-based methodology to identify reclaimable idle croplands and assess the AVS’s contribution to agriculture and photovoltaic energy in Japan’s Kansai region. Using official geographic data and excluding high-risk areas, this study employs GIS for quantitative analysis. Our method detected more reclaimable idle cropland than previous studies. Focusing on food security while limiting AVS installations to reclaimable idle croplands could still generate up to 4564.08 GWh of electricity (0.8% of regional consumption) and 930.82 tons of soybeans (6.2% of regional yield). Under a more stringent scenario that excludes areas less suitable for solar power, 5 of 227 municipalities could achieve 15% electricity self-sufficiency through AVS. This research uncovers the existence of reclaimable idle croplands that could not be detected by existing methods and a decentralized power source available alongside food security maintenance. These insights will inform decarbonization and agricultural policy and guide the development of supportive and regulatory AVS frameworks.

Outbreaks of bovine mastitis caused by specific Mycoplasma bovis strains recurring at multi-year intervals.

Mycoplasma bovis is a major cause of bovine mastitis. Intermittent shedding of the organism for many months is a feature of cows with intramammary infection. A dairy farm in Japan experienced a mastitis outbreak caused by M. bovis in 2016, as well as 2 additional outbreaks and 1 case in 2020-2021. The causative strains in the 3 outbreaks shared a common and identical genetic feature, the insertion of a transposase gene at the same site within the phosphate acetyltransferase-2 gene. Additionally, all isolates were genotyped to closely related sequence types (ST21 and ST141) by multilocus sequence typing, and had similar pulsopatterns by pulsed-field gel electrophoresis. Our results indicate that infection with the same causative strain remained in this herd and environment for 4 y. Treatment with fluoroquinolones, guided by antimicrobial susceptibility test results, eliminated M. bovis from 16 of 20 M. bovis-infected cows, as confirmed by culture and somatic cell counts. However, mastitis caused by other bacteria occurred in 9 M. bovis-free cows within 2 mo of the last treatment.

Coexistence of roof rats and carnivores in barns on a livestock farm in Japan.

Brown rats (Rattus norvegicus), roof rats (Rattus rattus), and house mice (Mus musculus) are considered to be important pests on livestock farms. Although the diel activity patterns of rodents are key to their control, information on this aspect of their ecology is limited. Furthermore, the effect of carnivores on rodent activity patterns as well as the carnivore species present on livestock farms is unclear. Here, we set camera traps in an open-type cow barn and in an enclosed pig barn on the same livestock farm in Japan from August through October 2021. The only rodents observed in both barns were roof rats, and the carnivore species observed were dogs (Canis familiaris), cats (Felis catus), and Japanese weasels (Mustela itatsi). Roof rats showed different patterns of activity and behavior between the barns. However, because the pattern in both barns was nocturnal, the activity patterns of roof rats and carnivores showed a moderate to high degree of overlap. Therefore, roof rats did not appear to shift their activity patterns to avoid nocturnal carnivores. Taken together, the present study provides valuable information for rodent control on livestock farms in Japan.

Sustainability in Japan’s Agriculture: An Analysis of Current Approaches

Sustainable agriculture has gained prominence as a response to global concerns, such as climate change, population growth, and improving the quality of life. In this context, Japan presents specific characteristics regarding land, economy, and population; however, studies related to sustainable agricultural practices and government measures remain insufficient. To evaluate the state of Japan’s sustainable agriculture, this paper presents a comprehensive literature review. In this paper, a bibliographic review was carried out, including articles, books, and governmental data, to contextualize the current state of agriculture in Japan and demonstrate that sustainable agriculture is being applied and encouraged in Japan. According to the research, in general, agriculture in Japan has been suffering over the years due to population decline and an aging population, and fewer young people are interested in agriculture. However, when it comes to sustainability, the country, government, and farmers have adopted several measures to improve aspects such as decreasing herbicide and pesticide use, payment for environmentally friendly farmers, and promoting education about good agricultural practices. This study illuminates the importance of Japan’s efforts to advance sustainable agriculture, potentially offering insights that could contribute to the broader global discourse on sustainable food production. Although Japan presents distinct characteristics, certain patterns observed in its approach may have relevance in similar contexts in other countries. The policies implemented in Japan provide data for comparative studies that aim to assess their adaptability and effectiveness in different global contexts.

A case-control study of the infection risk of H5N8 highly pathogenic avian influenza in Japan during the winter of 2020–2021

In Japan, outbreaks of H5N8 highly pathogenic avian influenza (HPAI) were reported between November 2020 and March 2021 in 52 poultry farms. Understanding HPAI epidemiology would help poultry industries improve their awareness of the disease and enhance the immediate implementation of biosecurity measures. This study was a simulation-based matched case-control study to elucidate the risk factors associated with HPAI outbreaks in chicken farms in Japan. Data were collected from 42 HPAI-affected farms and 463 control farms that were within a 5-km radius of each case farm but remained uninfected. When infected farms were detected as clusters, one farm was randomly selected from each cluster, considering the possibility that the cluster was formed by farm-to-farm transmission within an epidemic area. For each case farm, up to three control farms were selected within a 5-km radius. Overall, 26 case farms (16 layer and 10 broiler farms) and 75 control farms (45 layer and 30 broiler farms) were resampled 1000 times for the conditional logistic regression model with explanatory variables comprising geographical factors and farm flock size. A larger flock size and shorter distance to water bodies from the farm were found to increase infection risk in layer farms. Similarly, in broiler farms, a shorter distance to water bodies increased infection risk. On larger farms, frequent access of farm staff and instrument carriages to premises could lead to increased infection risk. Waterfowl visiting water bodies around farms may also be associated with infection risk.

Association of toxin-producing Clostridioides difficile with piglet diarrhea and potential transmission to humans.

The pathogenicity of Clostridioides difficile in piglets remains controversial. It is unknown whether C. difficile control helps protect piglet health. To clarify the association between C. difficile presence and piglet diarrhea, isolates were obtained from piglets with and without diarrhea. In addition, to determine the genetic relationship of C. difficile from pigs and humans, we performed whole-genome sequencing (WGS) of C. difficile isolates. Diarrheal and non-diarrheal stool samples were collected from neonatal piglets from five farms in Japan in 2021. To clarify the relationship between C. difficile derived from pigs and those from human clinical cases, WGS of C. difficile isolates was performed. Toxin-positive C. difficile were significantly more prevalent in piglets with diarrhea, although the overall frequency of C. difficile did not differ between piglets with and without diarrhea. This observation indicates an association between toxin-positive C. difficile and diarrhea in piglets. However, further studies are needed to establish a direct causal relationship and to explore other contributing factors to diarrhea in piglets. WGS results showed that C. difficile sequence type (ST) 11 including the hypervirulent PCR ribotype 078 isolates derived from Japanese pigs were closely related to ST11 of overseas strains (human clinical and animal-derived) and a Japanese human clinical strain. Toxin-positive C. difficile may cause diarrhea in piglets and hypervirulent C. difficile are spreading among pigs and human populations worldwide.

Effects of parity, calving season, and previous lactation's milk yield on fertility of dairy cows on a commercial farm.

This study investigated the effects of parity, season, and the previous lactation's milk yield on fertility in dairy cows. A total of 5,514 calving records for Holstein cows that calved between 2016 and 2018 on a single large dairy farm in Japan were used for analysis. The proportion of cows that get pregnant by 360 days after calving was defined as the percentage of all cows eligible for breeding that became pregnant. In the all-cow model, pregnancy probability associated with both parity and calving season (p < 0.05). Pregnancy probability decreased with an increase in parity, with hazard ratios (HRs) of 1.75 (1.58-1.94) for parity 1, 1.25 (1.13-1.39) for parity 2, 1.15 (1.04-1.29) for parity 3, and 1.13 (1.00-1.27) for parity 4, relative to parity ≥5. In terms of calving season, the lowest pregnancy probability was found in spring, and the HRs relative to spring were 1.16 (1.07-1.26) for summer, 1.35 (1.24-1.47) for autumn, and 1.17 (1.07-1.27) for winter. In the multiparous-cow model, pregnancy probability associated with the previous lactation's milk yield (p < 0.05), but not with parity or calving season. Cows with high and middle previous milk yields had lower pregnancy probabilities than those with low milk yields.

Identifying Effective Biosecurity Measures for Preventing the Introduction of Classical Swine Fever in Pig Farms in Japan: Under the Condition of Absence/Presence of Observable Infected Wild Boar

The outbreak of infectious diseases in swine, such as classical swine fever (CSF), has become a significant concern in the pig‐farming industry. In Japan, after the re‐emergence of CSF in 2018, farms are now exposed to the risk of transmission from infected wild boar and CSF‐contaminated farms. This study aimed to identify biosecurity measures that were effective for the prevention of CSF introduction into farms during the period from the beginning of the CSF epidemic to the implementation of a vaccination campaign for domestic pigs at risk. The probability of virus introduction was assumed to be increased by the elevated risk from CSF‐infected wild boar and infected farms around the farm. The risk from infected wild boar was represented by the prevalence of CSF in wild boar or the occupancy of 1‐km grid cells with infected wild boar within 10‐km radii from a pig farm and the occurrence of CSF outbreaks on neighboring farms. Conversely, the probability of virus introduction was assumed to decrease in response to on‐farm biosecurity measures being implemented on each farm. The implementation of biosecurity measures on the farms and farm attributes were obtained through a questionnaire survey. Analyses were performed on each farm under the weekly situations where infected wild boar were both absent and present in the vicinity using a binomial generalized linear model. On farms where infected wild boar were not present around farms, daily washing and disinfecting of work clothing in pig houses was identified as the main measure to reduce the risk of CSF introduction into farms. On farms with infected wild boar in the vicinity, the absence of public roads on the farm and preventing wildlife intrusion into the areas where pig carcasses were stored were demonstrated to be effective in preventing CSF introduction. Based on the assumption that strict and comprehensive biosecurity measures are required to prevent CSF introduction, the implementation of these potentially effective measures is worth being prioritized.

Association between highly pathogenic avian influenza outbreaks and weather conditions in Japan.

Highly pathogenic avian influenza (HPAI) poses a significant threat to animal and public health, with outbreaks occurring globally. HPAI poses significant challenges due to its high mortality rate and public health concerns, with outbreaks spreading globally since the emergence of the H5N1 virus in 2003. In Japan, HPAI outbreaks have been particularly prevalent during autumn and winter seasons, with the 2022-2023 winter experiencing the most severe outbreak to date. However, limited research has directly examined the association between HPAI outbreaks and weather conditions in Japan. Here we show that specific weather conditions are associated with an increased risk of HPAI outbreaks on poultry farms in Japan. By analyzing databases of HPAI cases and meteorological data from 2020-2023, we found that higher average air temperatures two to three weeks prior, lower average wind speeds four weeks prior, and longer sunlight hours two and four weeks prior to outbreaks were significantly associated with increased risk of HPAI outbreaks in Japan. These results suggest that weather may influence environmental survival and transmission of the virus, as well as patterns of wild bird movement that could seed new outbreaks. These findings enhance our understanding of the factors influencing HPAI transmission dynamics and highlight the importance of integrating weather forecasts into disease surveillance and prevention strategies.

Consensus building with fishermen on offshore wind farms in Japan: Current status and policy recommendations

This study explores the current situation of consensus building with fishermen regarding offshore wind farms in Japan and proposes improvements to the current institutional scheme. Interviews were conducted with fishermen and preceding operators in Akita Prefecture, Japan, where offshore wind projects are ongoing ahead of other regions. The results revealed that uncertainty remains in preceding operators’ financial commitments to fishermen because there is no guarantee that the operators will be selected, which is an issue with the current institutional scheme. To address this issue, this study proposes improvements to the current institutional scheme from three perspectives. First, the Government should establish unified standards for operators’ financial commitments to fishermen. Second, it should disclose the details of the commitments proposed by preceding operators engaged in consensus building. Third, it should mandate the fulfilment of the commitments by the appointed operator, regardless of whether the preceding operators were selected. These improvements can facilitate the future horizontal deployment of offshore wind farms in Japan within the existing legislative framework.