Feces Of Farm Animals Research Articles

Virulence and Antimicrobial Resistance Profiles of Shiga Toxin-Producing Escherichia coli from River Water and Farm Animal Feces near an Agricultural Region in Northwestern Mexico

Shiga toxin-producing Escherichia coli (STEC) are zoonotic enteric pathogens linked to human gastroenteritis worldwide. To aid the development of pathogen control efforts, the present study characterized the genotypic diversity and pathogenic potential of STEC recovered from sources near agricultural fields in Northwest Mexico. Samples were collected from irrigation river water and domestic animal feces in farms proximal to agricultural fields and were subjected to enrichment followed by immunomagnetic separation and plating on selective media for the recovery of the STEC isolates. Comparative genomic analyses indicated that the recovered STEC with the clinically relevant serotypes O157:H7, O8:H19, and O113:H21 had virulence genes repertoires associated with host cell adherence, iron uptake and effector protein secretion. Subsequent phenotypic characterization revealed multidrug resistance against aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, penicillin, phenicol, and tetracycline, highlighting the need for improved surveillance on the use of antimicrobials. The present study indicated for the first time that river water in the agricultural Culiacan Valley in Mexico is a relevant key route of transmission for STEC O157 and non-O157 with a virulence potential. In addition, feces from domestic farm animals near surface waterways can act as potential point sources of contamination and transport of diverse STEC with clinically relevant genotypes.

Listeria monocytogenes in Irrigation Water: An Assessment of Outbreaks, Sources, Prevalence, and Persistence.

As more fresh fruits and vegetables are needed to meet the demands of a growing population, growers may need to start depending on more varied sources of water, including environmental, recycled, and reclaimed waters. Some of these sources might be susceptible to contamination with microbial pathogens, such as Listeria monocytogenes. Surveys have found this pathogen in water, soil, vegetation, and farm animal feces around the world. The frequency at which this pathogen is present in water sources is dependent on multiple factors, including the season, surrounding land use, presence of animals, and physicochemical water parameters. Understanding the survival duration of L. monocytogenes in specific water sources is important, but studies are limited concerning this environment and the impact of these highly variable factors. Understanding the pathogen’s ability to remain infectious is key to understanding how L. monocytogenes impacts produce outbreaks and, ultimately, consumers’ health.

Multiresistant Bacteria Isolated from Intestinal Faeces of Farm Animals in Austria.

In recent years, antibiotic-resistant bacteria with an impact on human health, such as extended spectrum β-lactamase (ESBL)-containing Enterobacteriaceae, methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant Enterococci (VRE), have become more common in food. This is due to the use of antibiotics in animal husbandry, which leads to the promotion of antibiotic resistance and thus also makes food a source of such resistant bacteria. Most studies dealing with this issue usually focus on the animals or processed food products to examine the antibiotic resistant bacteria. This study investigated the intestine as another main habitat besides the skin for multiresistant bacteria. For this purpose, faeces samples were taken directly from the intestines of swine (n = 71) and broiler (n = 100) during the slaughter process and analysed. All samples were from animals fed in Austria and slaughtered in Austrian slaughterhouses for food production. The samples were examined for the presence of ESBL-producing Enterobacteriaceae, MRSA, MRCoNS and VRE. The resistance genes of the isolated bacteria were detected and sequenced by PCR. Phenotypic ESBL-producing Escherichia coli could be isolated in 10% of broiler casings (10 out of 100) and 43.6% of swine casings (31 out of 71). In line with previous studies, the results of this study showed that CTX-M-1 was the dominant ESBL produced by E. coli from swine (n = 25, 83.3%) and SHV-12 from broilers (n = 13, 81.3%). Overall, the frequency of positive samples with multidrug-resistant bacteria was lower than in most comparable studies focusing on meat products.

A One Health approach to assessing occupational exposure to antimicrobial resistance in Thailand: The FarmResist project.

This Southeast Asia-Europe research project will use a One Health approach to identify the major parameters responsible for the presence of animal-associated antimicrobial resistant bacteria in animal production facilities in Thailand and the risk of their transmission from animals to humans. We will focus on traditional, small, extensive pig and poultry farms where information on antibiotic use is scarce and animals live in close contact with humans. This cross-sectional study will be based on the epidemiological analysis of the antimicrobial resistance (AMR) present in fecal samples from animals and humans. Extended spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) and Enterobacteriaceae resistant to colistin will be actively searched in the feces of farm animals (pigs and poultry), small wild rodents and farmers. Phenotypic (selective plating) and genotypic (multilocus seuquence typing and sequencing) methods will be used for the detection of AMR, the identification of antibiotic resistance genes (ARGs) and the characterization of strains carrying resistance genes. Questionnaires will be administered to investigate the effects of antibiotic use, farm characteristics and biosecurity measures on the occurrence of AMR in animals. Subsequently, the fecal carriage of AMR and ARGs in farmers will be compared to a control population with no occupational contacts with animals, thus enabling an estimation of the risk of transmission of AMR/ARGs from animals to farmers.

Isolation and characterization of Clostridium difficile in farm animals from slaughterhouse to retail stage in Isfahan, Iran.

To determine the prevalence of Clostridium difficile in farm animals from slaughterhouse through to retail stage, a total of 750 samples of feces, posteviscerated and washed carcass were collected from cattle, camels, goats, and sheep in Isfahan, Iran. The overall prevalence of C. difficile in feces, posteviscerated and washed carcass were 20 (13.3%), 23 (15.3%), and 11 (7.3%), respectively; while C. difficile was isolated from 79 (26.3%) retail samples. Twenty-nine (3.8%) isolates were toxigenic, with most toxigenic isolates (n = 17, 5.6%) identified from the retail stage. All toxigenic isolates harbored tcdA and tcdB; however, all were negative for cdtB. The 29 isolates were classified into 21 different ribotypes. This study revealed evidence of existence of toxigenic C. difficile in farm animal feces and meat in Iran.

Winter diet of Yellowhammers Emberiza citrinella on contemporary farmland: the different contribution of forbs, wild grasses and cereals in semi-natural and agricultural habitats

Capsule Composition of Yellowhammer diet differed significantly between two major habitat categories: semi-natural (fallow lands, abandoned grassland and road verges) and agricultural habitats (managed fields, stubble fields and manure heaps). Semi-natural habitats and winter stubble fields were important sources of non-cereal plant food and plant parts of cereals were the staple diet in fallow lands, managed fields and manure heaps.Aims To determine the composition of the winter diet and food niche of Yellowhammers feeding on various farmland habitat types characteristic of lowland agricultural areas in Central Europe.Methods Diet was determined on the basis of faecal sample analysis. Multivariate analysis of variance, principal component analysis and two measures of diversity (Shannon Diversity Index and Berger–Parker Index of Dominance) were used to assess the variation in contribution of various plant parts of dicotyledons (henceforth referred to as forbs), wild grasses and cereals in the diet.Results Dietary composition differed significantly between six types of farmland habitats, as well as between these habitats pooled into two major habitat categories: semi-natural and agricultural ones. Plant parts of cereals (grain fragments and husks) were the staple diet in fallow lands, managed fields and manure heaps and were the sole items consumed in crop fields. Plant parts of dicotyledon weeds were eaten almost exclusively in semi-natural habitats. The contribution of wild grasses was highest in stubble fields. The most diverse diet was in fallow lands (road verges > manure heaps > abandoned grasslands > stubble fields) and the most simple in managed fields. Overall diet diversity was positively correlated with the proportion of parts of forbs (dicotyledonous weeds) and negatively correlated with the proportion of pooled fragments of wild grasses and cereals.Conclusion Semi-natural habitats and winter stubble fields are important sources of non-cereal plant food for Yellowhammers. In particular, unpaved roads and fallow land support dicotyledonous weed seeds (Polygonum spp.), and manure heaps contain cereal plant food (probably both husks and seeds from the faeces of farm animals and straw used as litter in their bedding). Contemporary changes in weed communities as a consequence of intensification of agriculture that has reduced this flora to certain abundant nitrophilous species (e.g. Polygonum spp., Chenopodium album, Echinochloa crus-galli and Setaria spp.), the seeds of which are often consumed by Yellowhammers, can therefore increase the food resources of granivorous birds. A mosaic landscape with crop-free plots and microhabitats (with patches of permanent vegetation like road verges), stubble fields (with natural regeneration of annual weeds) and manure heaps enables Yellowhammers to find local feeding grounds, especially during periods of thick snow cover, when feeding sites or resources in open farmland are inaccessible.

Quantification of E. coli O157 and STEC in feces of farm animals using direct multiplex real time PCR (qPCR) and a modified most probable number assay comprised of immunomagnetic bead separation and qPCR detection

To better understand Escherichia coli O157:H7 on-farm transmission dynamics requires sensitive methods for quantification of a broad range of concentrations of target organisms. For this purpose, a multiplex real time PCR (qPCR) assay was developed for quantification of O157 E. coli from 1g fecal samples of cattle and other animal species, targeting the Shiga toxin genes (stx1 and stx2) and the O157 somatic antigen gene, per. The multiplex qPCR assay provided specific detection across a broad range of bacterial concentrations with a lower limit of detection (LOD) of 101 genome copies which is equivalent to 101 bacteria. However, the LOD, when direct qPCR was applied to quantification of the targets in the feces of dairy cattle, was 103 genome copies per gram of feces. Enumeration below the threshold for direct qPCR was performed using a modified most probable number (mMPN) method whereby E. coli O157 in enriched samples was isolated using immunomagnetic bead separation (IMS) and detected using qPCR, thus reducing the time and logistic constraints of biochemical/serological/gel analysis. Application of the mMPN (IMS/qPCR) assay to samples that were negative when tested using direct qPCR alone permitted quantification of low levels of E. coli O157 below levels detectable with direct qPCR. The direct qPCR and mMPN (IMS/qPCR) assays were applied to fecal samples from dairy, beef, swine and poultry feces. This approach can be employed to gain a better understanding of the patterns of infection in animals for analysis of on-farm transmission dynamics, for evaluating the effects of on-farm control strategies and for risk assessment in public health.

Prevalence of antibiotic resistance genes in faecal samples from cattle, pigs and poultry

Antibiotic resistant bacteria can be easily isolated from the faeces of cattle, pigs or poultry. However, whether the production of different farm animals is associated with a higher or lower prevalence of antibiotic resistance is not clear. In this study we therefore used real time PCR for the quantification of antibiotic gene prevalence in the DNA purified from the faeces of farm animals. First we showed that experimental streptomycin therapy of 12-week-old chickens and 46-week-old hens significantly increased the relative prevalence of strA and sul2 genes though this did not necessarily indicate an absolute increase of strA-encoding bacteria. Next we quantified antibiotic gene prevalence in the DNA purified from the faeces of cattle, pigs and laying hens. The lowest prevalence of strA, aadA, sul1, sul2, tet(A), tet(B), tet(G) and cat genes was recorded in the intestinal contents of laying hens. In cattle and pig faecal samples, an intermediate prevalence of antibiotic resistance genes was observed with strA and sul2 dominating by two logs over the remaining six tested genes. The differences in strA and sul2 prevalence between cattle and pig microbiota were not significant whilst the prevalence of strA and sul2 in laying hen microbiota was significantly lower than in the other two species. Cattle and pig production systems may therefore represent a more important reservoir of antibiotic resistant bacteria than laying hens.  

First Detection of the Antiseptic Resistance GeneqacA/B inEnterococcus faecalis

Resistance to disinfectants is well investigated in staphylococci and pseudomonads but nearly unexplored in bacteria of the genus Enterococcus, despite their rising significance as nosocomial pathogens. In this study, Enterococcus faecalis (n=585) from blood (n=42) and stool (n=109) of hospitalized humans, from faeces of farm animals (n=226), and from food (milk and dairy products, n=96; meat and meat products, n=112) were screened for the presence of qac-genes (qacA, qacB, qacC, smr [qacC+qacD], qacEΔ1, qacG, qacH, qacJ) via PCR. The isolates' susceptibility to a quaternary ammonium compound (didecyldimethylammoniumchloride, DDAC) and antibiotics was assessed by microdilution. Four E. faecalis strains were positive for qac-genes: qacA/B was found in one isolate from cattle and one isolate from human blood; smr (qacC+qacD) was detected in one isolate from human stool and in one isolate from cheese ("Camembert"). The sequences of the qacA/B-amplicons differed in two basepairs. DDAC had an elevated minimum inhibitory concentration (MIC) of 2.45-3.5 mg/L in one qacA/B-positive strain from human blood, whereas the other qac-gene carriers had wild-type MIC-values for DDAC (1.05 mg/L). This is the first detection of qacA/B in the genus Enterococcus.

Geographical and Temporal Dissemination of Salmonellae Isolated from Domestic Animal Hosts in the Culiacan Valley, Mexico

The prevalence and diversity of salmonellae from domestic animal hosts were investigated in the Culiacan Valley, Mexico. A total of 240 farm animal feces (cows, chicken, and sheep) were evaluated for Salmonella spp. presence from July 2008 to June 2009. Salmonella enterica subsp. enterica strains were isolated from 76 samples (31.7%), and 20 serotypes were identified being Salmonella Oranienburg (25%), Salmonella Give (14%), Salmonella Saintpaul (12%), and Salmonella Minnesota (11%) the most frequent isolates. Twenty-four percent (18/76) of the isolates were resistant to ampicillin. Salmonella Oranienburg, Salmonella Minnesota, Salmonella Give, Salmonella Agona, Salmonella Weltevreden, and Salmonella Newport serotypes showed multiple pulsed-field electrophoresis patterns. Salmonella Oranienburg was the dominant serotype in the Culiacan Valley; however, no specific distribution patterns were detected in animal sources or sampling sites. The genetic diversity of salmonellae could be an evidence of the continuous animal exposition to the bacteria. Also, Salmonella adaptation in asymptomatic animals could be justified by the development of natural host immunity. This study provides novel information about Salmonella population distribution in domestic animals living at tropical areas. The presence of asymptomatic carriers may be critical to understand the routes of transmission of Salmonella in areas of high disease prevalence.

The potential for the control of Escherichia coli O157 in farm animals.

The presence of Escherichia coli O157 in the faeces of farm animals appears to provide a primary route for human infection, either through physical contact or by contamination of the food chain. Controlling the survival and proliferation of this pathogen in the ruminant gut could offer a measure of protection in the short term, and ultimately complement alternative biotechnological based solutions. Normally, E. coli is greatly outnumbered in the ruminant gut by anaerobic bacteria, producers of weak acids inhibitory to the growth of this species. Withdrawal of feed prior to animal slaughter reduces the concentration of these acids in the gut and may be accompanied by the proliferation of E. coli. There are conflicting reports concerning the effects of changes in the ruminant diet upon faecal shedding of E. coli O157. It is contended that it is important to identify animal husbandry methods or feed additives that may be accompanied by an increased risk of proliferation of this pathogen. Greater understanding of the mechanisms involved in bacterial survival in the presence of weak acids, in the interactions between E. coli and other gut bacteria, and of the effects of some antibacterial plant secondary plant compounds on E. coli, could lead to the development of novel control methods.

Viral pollution in the environment and in shellfish: human adenovirus detection by PCR as an index of human viruses.

A study of the presence of human viruses (adenoviruses, enteroviruses, and hepatitis A viruses [HAVs]) in environmental and shellfish samples was carried out by applying DNA and cDNA amplification techniques by PCR. The detection of human adenoviruses by PCR was also examined as a potential molecular test to monitor viral pollution. The samples studied were urban and slaughterhouse sewage, river water, seawater, and shellfish. Enteroviruses were quantified by PFU in Buffalo green monkey kidney cells and fecal coliforms and phages of Bacteroides fragilis HSP40 were also evaluated in some of the samples. The amplification of viral DNA and cDNA has shown a high prevalence of human viruses that would not be detected by the use of classical techniques, such as the quantification of PFU in cell lines. The results of the analysis of slaughterhouse sewage samples together with the test of farm animal feces indicate that the adenoviruses and the HAVs detected in the environment are mostly of human origin. A significative correlation between the detection of human viruses by PCR and the values of bacteriophages of B. fragilis HSP40 in urban raw sewage was observed. Human adenoviruses were the viruses most frequently detected throughout the year, and all the samples that were positive for enteroviruses or HAVs were also positive for human adenoviruses. The results suggest that the detection of adenoviruses by PCR could be used as an index of the presence of human viruses in the environment where a molecular index is acceptable.

Some physiological properties of microorganisms capable of deodorizing farm animal feces

Some physiological properties of deodorant microorganisms from the seed culture which had been used for the treatment of the feces of farm animals were studied. One hundred and forty isolates were obtained, of which 122 isolates could actively deodorize the feces. These strains were divided into three groups (I, II, and III) based on the utilization of carbon sources. Group I and II isolates which preferentially utilized VFA were found to be dominant in the seed culture, whereas Group III isolates preferred sugars to the acids as the carbon source. The three typical strains from each group were identified tentatively as Rhodococcus, Bacillus and Staphylococcus spp. The presence of glucose repressed growth on n-valeric acid by about 20 and 80% for Bacillus and Rhodococcus, respectively. Both strains did not utilize glucose. Staphylococcus sp. utilized more sugars than acids.

Occurrence of Rhodococcus coprophilus and associated actinomycetes in feces, sewage, and freshwater.

Freshwater, sewage, and fecal samples from various sources were examined for Rhodococcus coprophilus, associated actinomycetes, Escherichia coli, and fecal streptococci. Rhodococcus coprophilus was isolated consistently from feces of farm animals, poultry reared in proximity to farm animals, freshwater, and wastewater polluted with animal fecal wastes. It was not isolated from samples of human feces. The ratio of R. coprophilus total actinomycetes was higher in feces from cattle, sheep, ducks, and geese than in specimens from pigs, horses, and fowl. In samples from two freshwater streams polluted by fecal material from farm animals, the ratios of R. copropilus to total actinomycetes were similar to those found in fecal specimens from cattle and sheep. Ratios of fecal coliform to fecal streptococci could not distinguish between fresh human and animal fecal samples and, furthermore, were not reflected in the stream waters polluted by animal fecal material. R. coprophilus has potential in water and dairy bacteriology as a specific indicator organism of fecal pollution due to farm animal wastes.

A Selective Medium for the Enumeration of Streptococcus bovis by Membrane Filtration

A new selective medium (membrane‐bovis agar) for the detection and enumeration of Streptococcus bovis is described. It has been successfully used to quantify this organism in polluted waters, sewage and faeces of humans and farm animals. This medium is based on the ability of Strep. bovis to utilize ammonium sulphate as its sole source of nitrogen. Streptococcus faecalis, Strep. faecium, Strep. equinus, Strep. salivarius. Strep. mitis and other bacteria commonly found in water, sewage and faeces are completely inhibited.Streptococcus bovis appear to be the predominant faecal streptococci in the faeces of farm animals and absent in the faeces of humans. A total of 541 characteristic colonies (on m‐BA), isolated from various sources were identified to species level. Over 97% proved to be Strep. bovis. Therefore, routine confirmatory tests on colonies growing on this medium would appear to be unnecessary.

The Percentage and Viability of Weed Seeds Recovered in the Feces of Farm Animals and Their Longevity When Buried in Manure1

Agronomy JournalVolume 26, Issue 9 p. 762-767 Article The Percentage and Viability of Weed Seeds Recovered in the Feces of Farm Animals and Their Longevity When Buried in Manure1 George W. Harmon, George W. HarmonSearch for more papers by this authorF. D. Keim, F. D. Keim Graduate student and Agronomist, respectively. Credit should be given to N. F. Petersen of the Department of Agronomy and Elva Norris, State Seed Analyst, for their helpful suggestions on the germination of the seeds, and to J. C. Russel for his constructive criticism of the manuscript.Search for more papers by this author George W. Harmon, George W. HarmonSearch for more papers by this authorF. D. Keim, F. D. Keim Graduate student and Agronomist, respectively. Credit should be given to N. F. Petersen of the Department of Agronomy and Elva Norris, State Seed Analyst, for their helpful suggestions on the germination of the seeds, and to J. C. Russel for his constructive criticism of the manuscript.Search for more papers by this author First published: 01 September 1934 https://doi.org/10.2134/agronj1934.00021962002600090010xCitations: 49 1 Contribution from the Department of Agronomy, Nebraska Agricultural Experiment Station, Lincoln, Nebr. Published with approval of the Director as Paper No. 149, Journal Series, Nebraska Agricultural Experiment Station. AboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onFacebookTwitterLinkedInRedditWechat Citing Literature Volume26, Issue9September 1934Pages 762-767 RelatedInformation