Extracellular Organic Substances Research Articles

Plankton Genes and Extracellular Organic Substances in the Ocean

Dissolved organic matter (DOM) in the ocean represents about 662 billion tons of C, 200 times more than the living biomass. It is produced mainly by microbial primary production. The largest fraction of this DOM is old (>weeks to months) and both chemically and biologically recalcitrant. The remainder is young (seconds to weeks), more labile and surface active. Part of the latter fraction changes the rheological properties in the bulk phase of the water and at interfaces including the sea surface microlayer (SML). In order of abundance, this DOM consists of sugars, amino acids, fatty acids and nucleic acids, often incorporated into complex polymers. The DOM molecules are produced by microbial genes, and are further modified by enzymes themselves produced by genes. The properties of ocean water and its interfaces as well as biogeochemical fluxes may thus be modified by ocean plankton genes. These fluxes influence ocean and atmospheric climate, which in return acts on the biota. Viral infection may furthermore modify prokaryotic and eukaryotic genes and their expression. Therefore, the ocean plankton genomes and the fluxes and climates they influence may be subject to Darwinian-type selection. Research programs need to integrate ocean ecology, rheology, biogeochemistry and genomics, to find the associations among them.

The effect of repeated energy inputs on the release profiles of extracellular organic substances in sewage sludge

Organic matter (OM) recovery from sewage sludge is critical for sustainable development. Extracellular organic substances (EOS) are the main organic components of sludge, and the release of EOS from sludge is usually the rate-limiting step for OM recovery. However, a poor understanding of the intrinsic characteristics of binding strength (BS) of EOS usually restricts the release of OM from sludge. To reveal the underlying mechanism that how the intrinsic characteristics of EOS limit its release, in this study, the BS of EOS in sludge was quantitatively characterised by 10 rounds of energy input (Ein) with the same magnitude per round; the corresponding changes in the main components, floc structures and rheological properties of sludge after different numbers of Ein were also explored. Results showed that relationships between the release of EOS and the main multivalent metals, median diameters, fractal dimensions, elastic modulus and viscous modulus in the linear viscoelastic region of sludge versus the number of Ein, highlighted that the power-law distribution of BS in EOS was responsible for the occurrence state of organic molecules, stability of floc structures and maintenance of rheological properties. The result of hierarchical cluster analysis (HCA) further revealed three BS levels of the EOS in sludge, indicating that the release or recovery of OM from sludge occurred in three stages. To the best of our knowledge, this is the first study that explores the release profiles of EOS in sludge by repeated Ein for assessing the BS. Our findings may provide an important theoretical basis for the development target methods about the release and recovery of OM from sludge.

Deciphering the underlying mechanism of MOF-808-based abiotic catalysis enhancing biodegradability of waste activated sludge: Insights from the effects on bioconversion of extracellular organic substances into methane

Extracellular organic substances (EOSs) usually control sludge biodegradability. Metal−organic framework-808 (MOF-808), a catalyst with a high ability of catalytic hydrolysis and proton transfer, has great potential to enhance biodegradability of EOSs. In this study, the underlying mechanism of MOF-808 enhancing the biodegradability of EOSs via abiotic catalysis was investigated. Experimental results showed that protein–like and humic acid–like substances were the main organic components in EOSs, and the MOF-808 enhanced the disintegration of protein-like substances rather than humic acid–like substances. Analyses of the changes in the functional group, the secondary structure of protein-like substances, and the electron transfer of catalytically degraded EOS samples revealed that the MOF-808 enhanced the hydrolysis of EOSs protein-like substances, loosened their secondary structure, and improved the electron transfer in EOSs. Further analyses of the MOF-808 before and after the catalysis reaction revealed that the coordination of Zr sites with protein-like substance-specific active sites (such as ZrN) in the MOF-808 substantially contributed to the high-efficiency catalysis. Biochemical methane potential assays confirmed that MOF-808–based abiotic catalysis promoted the generation efficiency of methane from the EOSs. These findings can elucidate the abiotic catalytic effect of MOF-808 on sludge biodegradability during the anaerobic digestion process.

Order-of-magnitude enhancement in photocurrent generation of Synechocystis sp. PCC 6803 by outer membrane deprivation

Biophotovoltaics (BPV) generates electricity from reducing equivalent(s) produced by photosynthetic organisms by exploiting a phenomenon called extracellular electron transfer (EET), where reducing equivalent(s) is transferred to external electron acceptors. Although cyanobacteria have been extensively studied for BPV because of their high photosynthetic activity and ease of handling, their low EET activity poses a limitation. Here, we show an order-of-magnitude enhancement in photocurrent generation of the cyanobacterium Synechocystis sp. PCC 6803 by deprivation of the outer membrane, where electrons are suggested to stem from pathway(s) downstream of photosystem I. A marked enhancement of EET activity itself is verified by rapid reduction of exogenous electron acceptor, ferricyanide. The extracellular organic substances, including reducing equivalent(s), produced by this cyanobacterium serve as respiratory substrates for other heterotrophic bacteria. These findings demonstrate that the outer membrane is a barrier that limits EET. Therefore, depriving this membrane is an effective approach to exploit the cyanobacterial reducing equivalent(s).

Contributions of MOF-808 to methane production from anaerobic digestion of waste activated sludge

The bioconversion of waste activated sludge (WAS) into methane is usually limited by the poor hydrolysis of sludge and/or poor syntrophic methanogenesis during anaerobic digestion (AD). In this study, the underlying mechanism of MOF-808 enhancing hydrolysis and syntrophic methanogenesis during AD process of WAS was investigated. Experimentally, with the effects of MOF-808 (150 mg MOF-808/g Volatile Solid (VS)), the methane production and the proportion of methane in biogas increased by approximately 26.7% and 15.6%, respectively, and the lag phase of methanogenesis decreased by 50.8%, which indicate that MOF-808 enhanced the generation efficiency of methane. The changes in activities of main hydrolytic enzymes with and without MOF-808 (150 mg MOF-808/g VS) during AD process revealed that MOF-808 improved the enzymatic hydrolysis of sludge, and the abiotic hydrolysis of sludge extracellular organic substances by MOF-808 shows that the maximum proportion and the initial increasing rate of low-molecular weight fractions increased by 60% and 583.7%, respectively, indicating that MOF-808 can greatly enhance the hydrolysis degree and rate of sludge via abiotic effect. These demonstrate that MOF-808 enhanced both biological and abiotic hydrolysis of sludge during AD. In addition, changes in the concentrations of acetate kinase and volatile fatty acids (VFAs) with and without MOF-808 (150 mg MOF-808/g VS) during AD process showed that MOF-808 accelerated the bioconversion of VFAs to methane, suggesting MOF-808 has a positive effect on syntrophic metabolism for methanogenesis. Moreover, further analyses of the microbial community structure of sludge samples with and without MOF-808 (150 mg MOF-808/g VS) showed that MOF-808 enriched hydrogen-producing bacteria and mixotrophic methanogens (i.e. Methanosarcina), and changed the methanogenic pathway via accelerating proton transfer between syntrophic anaerobes, especially improving the reduction of CO2 to methane, and resulting in highly efficient syntrophic methanogenesis. These findings, however, may provide an important reference for enhancing AD efficiency of WAS based on MOF-like materials.

Zararlı Alg Patlaması ve Marmara Denizindeki Müsilaj Problemi İlişkisi

Harmful phytoplankton species become dominant by increasing with the change of trophic conditions in aquatic environments that are under the pressure of many environmental problems such as pollution, overfishing, invasive species, and climate change. The overgrowth of these harmful phytoplankton species is often referred to as harmful algae growth or algal bloom, and as a result; a high amount of extracellular polymeric organic matter is secreted from the large number of living cells newly formed. These extracellular organic substances called mucilage; it is mostly produced by diatoms and dinoflagellates. This article provides basic information for describing the phytoplankton and the understanding of eutrophication and the mucilage problem caused by phytoplankton.

Effects of humic matter on the anaerobic digestion of sewage sludge: New insights from sludge structure.

A sludge structure perspective of the effects of humic matter (HM) on the anaerobic digestion (AD) of sewage sludge was proposed and investigated in this study. It was observed that the net cumulative methane production of sludge was significantly lower in the presence of HM. The fractal dimension values of sludge samples were increased by the addition of HM, whilst their total surface energy values were decreased, indicating that HM reinforced the stability of the sludge structure. Analyses of the physicochemical properties of different sludge samples revealed that HM enhanced the structural stability of sludge organic substances and restricted its organic solubility by interacting with the biopolymers to form a dense granular aggregate, thereby reducing the random-coil degree of extracellular organic substances and its active sites for enzymes, which suggested that HM could inhibit AD by changing the sludge structure. It was further confirmed by the biochemical methane potential (BMP) assay process. The BMP tests and corresponding kinetic analyses revealed that HM can restrict the potentials of sludge organic solubilisation, hydrolysis and acidification processes, but not necessarily the rates of these processes by enhancing the structural stability of high molecular weight readily biodegradable organic matter (RBOM) and restricting the mobility of low molecular weight RBOM (i.e., hydrolysis products). These findings can enrich understanding of the AD of sludge and may thus aid in the development of more effective methods to improve sludge treatment.

A study on the relationship between metabolism of Cyanobacteria and chemical oxygen demand in Dianchi Lake, China.

Recent increases in concentrations of chemical oxygen demand (COD-Cr) in Dianchi Lake, China, is an important factor affecting its water quality. Large volumes of cyanobacteria algae have also been recorded in this lake; its growth, distribution and metabolism are believed to directly or indirectly affect water quality. The relationship between metabolism of cyanobacteria and COD-Cr in Dianchi Lake, and the causes of this relationship, are examined in this study. Results show that the increase of COD-Cr concentration is closely related to the metabolism of algae, and that organic substances containing nitrogen and sugars, produced by metabolism, contribute to an increase of COD-Cr to a certain extent. The characteristics of fluorescence spectra of dissolved organic matter (DOM) in the Waihai area of Dianchi Lake are similar to those of algae culture water, and their dominant substances are protein-like substances. Algae release organic substances into water during its growth cycle and extracellular organic substances are mainly released during its normal growth and metabolism stages. Once algae cells enter the decline stage, internal organic matter is released during the dying and decomposition stages, resulting in a distinct increase of COD-Cr. A high concentration of organic matter is present in Dianchi Lake sediments, dominated by native organic matter predominantly derived from aquatic plants and plankton. This finding indicates a potential long-term risk of organic pollutants being released from dead algae cells into the lake. PRACTITIONER POINTS: There is a distinct positive correlation between COD-Cr and Chl-a concentration in Dianchi Lake. Organic substances containing nitrogen and sugars produced by algae metabolism contributed to COD-Cr. The cells die and decompose organic matter content in the water substantially increases, resulting in a distinct increase ofCOD-Cr. Weight >20kDa are mainly released into the water body during the decomposition of algae cells after mortality. Organic matter content in the water substantially increases, resulting in a distinct increase ofCOD-Cr.

Enhanced coagulation by high-frequency ultrasound in Microcystis aeruginosa-laden water: Strategies and mechanisms

Ultrasonic treatment has attracted much attention because of its physical and chemical effects that are distinct from those of chemical agents. In particularly, high-frequency ultrasound is known as an effective method because the theoretical resonance frequency of the gas vesicles in Microcystis aeruginosa is in the high frequency range (>100 kHz), which causes gas vesicles collapse and changes the settleability of the algal cells. In this work, the effects of the ultrasonic frequency, acoustic power density and duration on enhancing coagulation to remove turbidity in algae-laden water were studied. In order to explain the mechanism, the morphology of algae cells, the changes in extracellular organic substances, the zeta potential and the formation of hydroxyl radicals were analyzed systematically. Finally, Zeta potentials and flocs morphology after adding PAC were investigated to verify the mechanism. The results showed that the frequency exhibited fewer effects than power and duration on coagulation. SEM images showed that there were more severe cellular damages at 430 and 740 kHz than other frequencies. Sonication could cause the collapse of gas vesicle inside the cell, which was due to the instantaneous high pressure generated by the ultrasonic cavitation instead of the resonance. Furthermore, sonication would result in an increase in proteins in extracellular organic matter (EOM) with continuous ultrasonic irradiation, indicating that a small amount of proteins could promote coagulation and that the accumulation of proteins would inhibit coagulation. Free radical content testing showed that the production of excessive free radicals was often accompanied by a deterioration of the coagulation. The proper mechanical effects were the main mechanism of ultrasonic enhanced coagulation. Thus, it was recommended that the appropriate ultrasonic condition was the one that resulted in a small amount of protein leakage and little generation of free radicals, which occurred at 740 kHz and 0.02 W/mL in approximately 5 min, and would significantly enhance the turbidity removal rate in algae-containing water from approximately 80–90%.

Spatial Configuration of Extracellular Organic Substances Responsible for the Biogas Conversion of Sewage Sludge

The influence of the key structural features of sludge that are responsible for the low anaerobic conversion efficiency of sludge is poorly understood. In this study, sludge organic substances are reclassified into extracellular organic substances (EOSs) and cell biomass on the basis of sludge structure. The roles of EOSs in the biogas conversion of both sewage sludge (SS) and model sludge (MS) were investigated. It is observed that with increasing EOS content the net cumulative methane production (NCMP) of the sludge decreased by 36.4%, implying the crucial roles of EOSs in anaerobic sludge digestion. The experimental results showed that with increasing EOS content in sludge, the extracted EOS content decreased, indicating that the structural stability of EOSs in sludge was reinforced. Considering that the biodegradation of EOSs typically depends on structural stability, spatial configuration of EOSs has been hypothesized to account for the low anaerobic digestion efficiency. Further analyses of the spatial configuration of EOSs from the MS and SS revealed that the random-coil shape with extended chains in MS is more readily biodegradable than the dense globule shape with cross-linked chains in SS. These findings shed light on the underlying mechanism responsible for the low biogas conversion of sludge.

Nanoscale Identification of Extracellular Organic Substances at the Microbe–Mineral Interface by Scanning Transmission X-ray Microscopy

Abstract In the present study, we applied a scanning transmission X-ray microscopy (STXM) technique to investigate the spatial distribution of biomolecules at the microbe–mineral boundary during bioleaching process of pyrite (FeS2). STXM-based carbon and oxygen near-edge X-ray absorption fine structure (NEXAFS) directly showed that polysaccharides were localized within 150 nm of the bacteria–pyrite boundary and that sessile bioleaching bacteria produced polysaccharides-abundant extracellular biomolecules on the pyrite grain. The STXM-based NEXAFS technique has multiple advantages: (i) a high spatial resolution less than 50 nm, (ii) a nondestructive analytical technique with a high element of specificity, (iii) X-ray spectroscopic chemical speciation useful for the analysis of hydrated biomolecules. Thus, the STXM-based NEXAFS technique is a powerful tool to investigate the mechanism of biological process occurring at the microbe–mineral interface.

Nickel partitioning in biogenic and abiogenic ferrihydrite: The influence of silica and implications for ancient environments

Fe(III) (oxyhydr)oxides are ubiquitous in modern soils and sediments, and their large surface area leads to scavenging of trace elements. Experimental trace element partitioning between Fe(III) (oxyhydr)oxides and aqueous solutions have been used to elucidate the geochemical composition of the Precambrian oceans based on the trace element concentrations in Precambrian banded iron formations (BIFs). However, previous partitioning experiments did not consider the potential influence of microbially-derived organic material, even though it is widely believed that bacterial phytoplankton was involved in Fe(II) oxidation and the deposition of BIF primary minerals. Therefore, the present study focuses on sorption of Ni to, and co-precipitation of Ni with, both biogenic ferrihydrite precipitated by the freshwater photoferrotroph Rhodobacter ferrooxidans SW2 and the marine photoferrotroph Rhodovulum iodosum, as well as chemically synthesized ferrihydrite. We considered the influence of cellular organic material, medium composition and the availability of dissolved silica. Our results show a preferential association of Ni with ferrihydrite, and not with the microbial cells or extracellular organic substances. We found that the addition of silica (2mM) did not influence Ni partitioning but led to the encrustation of some cells with ferrihydrite and amorphous silica. The two- to threefold lower Ni/Fe ratio in biogenic as compared to abiogenic ferrihydrite is probably due to a competition between Ni and organic matter for sorption sites on the mineral surface. Additionally, the competition of ions present at high concentrations in marine medium for sorption sites led to decreased Ni sorption or co-precipitation. Based on our data we conclude that, if the Fe(III) minerals deposited in BIFs were – at least to some extent – biological, then the Ni concentrations in the early ocean would have been higher than previously suggested. This study shows the importance of considering the presence of microbial biomass and seawater ions in paleomarine reconstructions.

BIOLOGICAL STRATEGIES IN CONTROLLING OR MITIGATING MARINE HARMFUL ALGAL BLOOMS (HABS)

This paper provides a review of some biological control or mitigation strategies for HABs, a problem worldwide in coastal waters. Bacteria, viruses and parasites are abundant in marine ecosystems and their abilities for rapid replication and host-specificity make them attractive HAB controlling agents; however, potential ecological impacts need to be taken into account. Species interactions between bloom microalgae and other algae play essential roles in affecting the phytoplankton sequence either by competing for the available nutrient supply or by secreting extracellular organic substances (allelopathy) into the environmental medium. This control strategy is not well understood due to a lack of experimental data, especially under natural conditions. Grazing of phytoplankton by zooplankton and suspension-feeding benthos is also considered a promising control agent, but this approach has many logistical problems and is a long way from the application stage. Collectively, some of the biological strategies discussed are decades from possible implementation, but others are further developed and thus worth considering in the immediate future.

Biological coating of EPDM-membranes of fine bubble diffusers

Biological coatings on EPDM-membranes are a problem on many large wastewater treatment plants, as the oxygen supply of the micro-organisms is no longer guaranteed. Investigations prove that the pressure loss and the Shore A-hardness of the EPDM-membranes increase while on the other hand their softener content decreases accordingly. The detected coatings on the membrane surfaces and in the slits or holes of the membranes show extra-cellular organic substances (EPS), which, compared with fibrillar/filamented EPS usually found on surfaces in wastewater treatment plants, are viscous to a much greater extent. As, besides primary organic parts (carbon), the coatings on the membranes as well as in the slits or holes also consist of inorganic constituents (magnesium, silicon, and others), the authors assume that, the separating agent (and also inactive filler) talcum (magnesium silicate), used when producing the membranes, supports at least a first beginning of the coating. Superfine dust constituents and fibres, input via the compressed air, will build up inside the coating and consequently lead to a gradual clogging of the holes or slits. Besides chemical cleaning measures, the exchange of the EPDM-membranes against membranes of silicone would also be a possible measure to solve this problem. The market will decide, if, in the future, a cleaning or an exchange of the EPDM-membranes against membranes of silicone will be applied, but it has to be considered that the loss of softener is irreversible.

Stress Factors Enhancing Production of Algal Exudates: a Potential Self-Protective Mechanism?

Algae are known to produce extracellular organic substances under optimum conditions and increase their production under stress. The changes in amount and composition of extracellular carbohydrates and proteins of three green algae Scenedesmus quadricauda, Chlorella kessleri and Raphidocelis subcapitata (known as Selenastrum capricornutum) were studied after a 5-days’ cultivation under the influence of different types of stress factors (osmotic, organic, and heavy metal stressors). NaCl enhanced the quantity of carbohydrates more than proteins. A higher increase of proteins than carbohydrates was observed after addition of 3,5-dichlorophenol, glyphosate and cadmium chloride to algal cultures. The production of dissolved organic matter differs from species to species, with the age of a culture and the type of stressor

Bone Resorption in Human Cholesteatoma: Morphological Study with Scanning Electron Microscopy

The detailed mechanism of bone resorption in cholesteatoma was investigated by means of eroded ossicles obtained during middle ear surgery for cholesteatoma. In the light microscopic study, multinucleate osteoclasts with ruffled borders were found in contact with the eroded bone, which appeared to be osteoclastic lacunae. Scanning electron microscopy revealed the lacunae to be many absorption bays, 30 to 100 microns in diameter, clustered on the surface of eroded areas. Numerous cone-shaped stubs of digested collagen fiber bundles, consisting of scores of collagen fibrils and degenerated extracellular organic substances, were visible at higher magnification on the bottom of the absorption bay. The pattern of fusion and twining of the disarranged collagen fibrils at the top of the partly digested fiber bundles was clearly rendered by the alkali-water maceration method for scanning electron microscopy. We infer from the morphological evidence that osteoclastic resorption may be one of the major mechanisms of bone destruction in cholesteatoma, and that demineralization and degeneration of extracellular organic substances precede disruption of collagen fibrils at the front of bone resorption.

Sulfate deficiency stimulates release of dissolved organic matter in synchronous cultures of Scenedesmus obliquus

In synchronous cultures of the green alga Scenedesmus 276–3a suboptmal sulfate supply increases the concentration of dissolved organics considerably. The highest level of extracellular organic substances occurs at sulfate dosages which reduce growth by 50‐70% as compared to control cultures growing under standard conditions. Sulfate deficiency causes increased synthesis of carbohydrate and reduces the production of crude protein and chlorophyll almost simultaneously at incipient sulfur deficiency. Since the concentration of extracellular organic substance rises at the same time, this symptom of partial sulfur deficiency is interpreted as resulting from an imbalance between the production and utilization of photosynthetic products. Part of the excess carbohydrate is retained in the cells.