Acidogenic fermentation (AF) has been extensively explored. However, the impact of operational parameters on AF has led to inconsistent results. In this work, AF experiments were performed in a sequencing batch reactor (SBR) using simulated wastewaters solely containing soluble carbohydrates or proteins as carbon sources to independently assess the impact of the volumetric organic loading rate (OLRv) and of the specific organic loading rate (OLRs). When only carbohydrates were used, the main effluent components were acetic and butyric acids at OLRv of 6.0 g COD L−1 d−1, while changing OLRv over 11.0 g COD L−1 d−1 gave acetic acid and ethanol as main components. Conversely, if the carbon source consisted solely of proteins, increasing the OLRv or the OLRs had minimal impact on the AF performance and on the effluent composition. Also, in the case of carbohydrate experiments, increasing the OLRs from 2.3 to 3.8 g COD g−1 VSS d−1 promoted chain elongation reactions, as caproic acid formation was also observed. Besides, at the highest OLRv tested in this work for protein experiments (18.5 g COD L−1 d−1), it was obtained the maximum isocaproic acid concentration using mixed microbial cultures and without adding any external electron donor. The SBR configuration proved to be an adequate system, especially when proteins were used as carbon source, since it makes possible to keep low the OLRs and to reduce the hydrolysis limitations. Finally, the bacterial genera detected in the reactors notably changed between both substrates. Future work must be focused on identifying carboxylic acid producing-genera from proteins.
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