Greenhouse Experiment Research Articles

Evaluating corn, tall fescue and canola growth on sediments dredged from the Lorain Harbor

AbstractSoil degradation is a worldwide problem, causing the declining performance of many plant species. Recently, the application of sediments dredged from aquatic waterways has received attention for their potential as an organic amendment to revive degraded agricultural soils. In Ohio, dredged sediment research has largely focused on the success of corn (Zea mays) or soybean (Glycine max) following the application of dredged sediments from the Toledo Harbor, neglecting the potential for dredged sediments from the other eight harbors and waterways to change plant performance as well as failing to quantify benefits for other commonly grown crops in the region. In a greenhouse experiment, we applied dredged sediments from the Lorain Harbor to degraded agricultural soils across a variety of application ratios and quantified changes in germination, height over the growing season, final biomass, and yield for canola (Brassica napus), tall fescue KY 31 (Festuca arundinacea), and corn to better understand the potential for dredged sediments from this location to increase performance for a variety of regionally important plant species. Overall, plants grown on agricultural soils supplemented with dredged sediments from the Lorain Harbor consistently grew taller, faster, and were larger than the 100% dredged sediment treatments. Furthermore, both corn and tall fescue grown on agricultural soil supplemented with dredged sediments had greater yield compared to their counterparts grown on unamended agricultural soil. In whole, outcomes from this research contribute to a growing body of research that support the use of dredged sediments as a soil amendment for agricultural soils.

The Impact of Grafting with Different Rootstocks on Eggplant (Solanum melongena L.) Growth and Its Rhizosphere Soil Microecology

This study investigated the effects of grafting on eggplant growth, yield, and disease resistance, with a focus on microbial dynamics in the rhizosphere. Eggplant scions were grafted onto rootstocks of wild eggplant and tomato, with self-rooted eggplants serving as controls. Greenhouse experiments were conducted over an eight-month growing period, using standard field practices such as film mulching and integrated water–fertilizer management. High-throughput sequencing was used to analyze the biological properties and microbial community of the rhizosphere soil. Results showed that plants grafted onto ‘Huimei Zhenba’ and ‘Torvum’ rootstocks yielded up to 36.89% more than self-rooted controls, achieving yields of 4619.59 kg and 4399.73 kg per 667 m², respectively. The disease incidence of bacterial wilt was reduced to as low as 3.33% in the ‘Huimei Zhenba’ treatment, compared to 55.56% in non-grafted controls. Additionally, grafted plants exhibited increased stem diameter and chlorophyll content, with the TL/HM combination reaching 54.23 ± 3.17 SPAD units. The enhanced microbial biomass of carbon, nitrogen, and phosphorus, particularly in the TL/HM treatment (377.59 mg/kg, 28.31 mg/kg, and 36.30 mg/kg, respectively), supports a more nutrient-rich rhizosphere environment. Moreover, soil enzyme activities, such as β-glucosidase and phosphatase, were significantly higher in grafted plants, enhancing nutrient cycling and potentially increasing resistance to pathogens. Overall, grafted eggplants demonstrated enhanced soil microbial biomass, enzyme activity, and a more diverse microbial community, which are critical factors contributing to the improved yield and disease resistance observed in grafted crops.

Impact of Drying–Wetting Cycles on Nitrification Inhibitors (DMPP and DMPSA) in a Greenhouse Experiment with Two Contrasting Mediterranean Soils

Studies of the impact of nitrification inhibitors (NIs), specifically DMPP and DMPSA, on N2O emissions during “hot moments” have produced conflicting results regarding their effectiveness after rewetting. This study aimed to clarify the effectiveness of NIs in reducing N2O emissions by assessing residual DMP concentration and its influence on ammonia-oxidizing bacteria (AOB) in two pot experiments using calcareous (Soil C, Calcic Haploxerept) and acidic soils (Soil A, Dystric Xerochrepts). Fertilizer treatments included urea (U), DMPP, and DMPSA. The experiments were divided into Phase I (water application to dry period, 44 days) and Phase II (rewetting from days 101 to 121). In both phases for Soil C, total N2O emissions were reduced by 88% and 90% for DMPP and DMPSA, respectively, compared with U alone. While in Phase I, the efficacy of NIs was linked to the regulation of AOB populations, in Phase II this group was not affected by NIs, suggesting that nitrification may not be the predominant process after rewetting. In Soil A, higher concentrations of DMP from DMPP were maintained compared to Soil C at the end of each phase. Despite this, NIs had no significant effect due to low nitrification rates and limited amoA gene abundance, indicating unfavorable conditions for nitrifiers. The study highlights the need to optimize NIs to reduce N2O emissions and improve nitrogen efficiency, while understanding their interactions with the soil. This knowledge is necessary in order to design fertilization strategies that improve the sustainability of agriculture under climate change.

Effect of Grasses on Native Tree Seedling Establishment Along a Water Stress Gradient: Results of Forest and Greenhouse Experiments

ABSTRACTAnthropogenic activities such as cattle grazing and forest clearing have led to the establishment of early successional grass layers in some native forests, which may inhibit or entirely prevent native tree regeneration. We hypothesize that increased grass coverage reduces or eliminates the establishment of native tree seedlings by limiting water availability to seeds and seedlings. This study aims to evaluate the impact of grass cover on tree seedling survival under varying levels of soil water stress. We conducted a field experiment using 36 experimental exclosures in two northwest Patagonian valleys, representing a regional gradient in altitude, rainfall, and tree canopy openness. Additionally, a greenhouse experiment was performed with 36 pots, manipulating four levels of grass cover and three levels of water stress. Results from both experiments showed similarities: in the field, the likelihood of finding a live tree seedling was approximately 2.78 times higher in areas without grass compared with grass‐covered sites. In the greenhouse, the presence of grass reduced the final number of established seedlings by an average of 43% across all irrigation levels, indicating significant water competition. These findings suggest that management practices promoting grass invasion could severely hinder tree regeneration in forests not adapted to large herbivore intensive grazing. Such situation may be exacerbated in regions suffering water limitation in the growing season or where the climate change would intensify water stress.

GmSTOP1-3 Increases Soybean Manganese Accumulation Under Phosphorus Deficiency by Regulating GmMATE2/13 and GmZIP6/GmIREG3.

Mineral nutrient deficiencies and metal ion toxicities coexist on acid soils. Phosphorus (P) deficiency in plants is generally accompanied with significant levels of leaf manganese (Mn) accumulation. However, the molecular regulatory mechanisms underpinning remain unclear. The present study found that P-deficient soybean plants accumulated more Mn compared to P-sufficient ones on acid soils in both field and greenhouse experiments. Meanwhile, both P deficiency and Mn toxicity enhanced the expression of GmSTOP1-3. Over-expressing GmSTOP1-3 enhanced Mn accumulation in transgenic soybean hairy roots, but RNA-interference did not show obvious differences. Moreover, transgenic soybeans with GmSTOP1-3-overexpression showed enhanced root citrate exudation and augmented Mn accumulation. RNA-sequence identified four downstream genes of GmSTOP1-3, including multidrug and toxic compound extrusion (GmMATE2/13) and metal transporter genes (GmZIP6/GmIREG3), which encode plasma membrane proteins. GmSTOP1-3 activated the transcription of these four genes by directly binding to their promoter regions. In addition, both GmZIP6 and GmIREG3 functioned in Mn uptake as manifested by the higher Mn concentration and decreased growth of soybean hairy roots with their overexpression. Taken together, it is suggested that upregulation of GmSTOP1-3 by low P stress on acid soils activates transcripts of GmMATE2/13 and GmZIP6/GmIREG3, which consequently result in enhanced Mn accumulation in soybean.

Phenotypic characterization of Echinochloa species in California rice

AbstractTwo independent greenhouse experiments were conducted in December 2020 and July 2021 in Davis, CA to characterize Echinochloa crus‐galli (L.) P. Beauv., Echinochloa colona (L.) Link, Echinochloa oryzicola (Vasinger) Vasinger and Echinochloa walteri (Pursh) A. Heller found in California rice systems based on their morphological traits. Phenotypic data was collected on 10 vegetative traits including plant height, number of tillers, flag leaf length, flag leaf width, flag leaf angle, the colour of leaf sheath, leaf blade colour, internode colour, node colour, growth habit and nine reproductive traits including number of days to heading, number of panicles, length of panicle, length of panicle branches, seeds per panicle, panicle weight, seed colour, awn length and awn pattern. High plasticity was observed in all species characterized in both experiments for both vegetative and reproductive traits, indicating potential inter‐specific hybridization. Awn length, days to heading, length of the panicle, length of the panicle branches, plant height, flag leaf angle, and growth habit were significantly higher in the fall experiment for all species indicating photoperiod could play a role in the expression of these traits. Also, high variation was observed for plant height, number of tillers, awn length, panicle weight, seeds/panicle, length of panicle branch, and number of panicles for all species in both experiments. The results from this study indicate morphological diversity currently present in Echinochloa species could contribute to their adaptation to selection pressure imposed by different management tools in California, emphasizing the need for a diversified management approach to effectively control this weed species.

Foliar Application of Methyl Jasmonate and Chitosan Improve Growth, Yield, and Quality of Guar (Cyamopsis tetragonoloba L.) Under Water-Deficit Stress

Guar (Cyamopsis tetragonoloba L.), a summer legume, is becoming increasingly important as an industrial crop due to its high gum and viscosity content. This study investigated the effects of methyl jasmonate (MeJA), chitosan (CH), and their combination on the growth, yield, and quality of guar under irrigation regimes. A greenhouse experiment was conducted using a factorial design to evaluate the effect of foliar spraying with MeJA (5, 25, and 50 µM), CH (100, 150, and 200 mg/L), their combination (25 µM MeJA + 150 mg/L CH), and control on two commercial guar varieties (RGC-986 and BR-2017) under different irrigation regimes (100%, 70%, and 40% field capacity). The results showed that the exogenous application of MeJA and CH, individually and in combination, significantly enhanced various morphological traits and yield components in guar, including plant height, pod characteristics, seed yield, and root development. Additionally, the combination treatments improved seed quality parameters, such as gum percentage and viscosity content. Leaf analysis revealed increased levels of total phenolic content, total flavonoid, and anthocyanin contents. The BR-2017 variety showed superior performance in most morphological and qualitative traits, demonstrating greater resistance to irrigation regimes. It maintained yield and quality characteristics under water-deficit conditions, particularly when treated with 25 µM MeJA and 150 mg/L CH. The highest gum percentage (33.67%) and viscosity (4768.5 cP) were observed in the RGC-986 variety, along with enhanced levels of secondary metabolites. This study provides new insights into how MeJA, CH, and their combination can improve the yield and quality of guar under water deficit stress conditions. The results suggest that the use of these elicitors, especially in combination, represents an innovative strategy for improving guar production and quality, with potential variety-specific responses to water-deficit stress.

Is Clonal Integration a Buffer for the Stress of Resource Acquisition Depletion in Eichhornia crassipes (Pontederiaceae) Ramets?

Natural selection favors the allocation of finite resources to different functions maximizing fitness. In this sense, some functions may decrease whereas others increase when resources are limited in a process called a trade-off. However, a great variety of situations may obscure trade-off detection in clonal plants, such as the ability to generate offspring by clonal growth that represents opportunities for resource uptake. The aim of this work was to evaluate if clonal integration and resource availability mediate biomass allocation patterns in E. crassipes through a greenhouse experiment. We set ramets in clonal and isolated conditions, and with and without leaf blades, and compared the relationship of biomass proportion allocated to each vegetative organ. We found that biomass allocation to vegetative structures in E. crassipes is primarily shaped by resource pools and is enhanced by clonal integration as attached ramets invest more in growth and vegetative structures. In this sense, regarding trade-off patterns in biomass allocation among vegetative organs and under resource depletion, clonal integration may represent a way to stabilize biomass allocation patterns and may decrease trade-off importance. We discuss trade-offs and clonal integration as evolutionary strategies that allow plant persistence and improve plants fitness. These findings may support aquatic plant management and control efforts while highlighting the evolutionary significance of clonal integration for plant life strategies.

Carbon isotope composition of biomass and water use efficiency in young plants of Jatropha curcas L. under irrigated or water deficit conditions

Jatropha curcas L. is a non-food crop quoted as a promising natural feedstock for biodiesel production in tropical and subtropical regions. Although an efficient mechanism of drought avoidance through stomatal control of transpiration has been demonstrated in this species, low carbon assimilation and growth rates preclude any advantage of such strategy under water limitation. Two greenhouse experiments were conducted with the objective of investigating varietal differences in water use as the trade-off between carbon isotope composition (δ13C) in different tissues and water use efficiency, in young plants of J. curcas. The first experiment was a survey with seven provenances of J. curcas under non-limiting water availability. There were no significant differences among provenances for leaf gas exchange rates, growth and whole-plant transpiration (T). However, significant effects of provenance and tissue (stem bark or leaf) in δ13C were demonstrated. The provenances CNPAE183 and CNPAE222 were selected for the second experiment, as variations in water use traits and δ13C between the two provenances were observed. Soil water deficit, imposed for 18 days, led to significant physiological, biochemical, and morphological changes. An early and sharp response to water deficit in CNPAE183 as compared to CNPAE222 was observed, as indicated by a 44% higher rate of decrease of T in the former. In addition, water deficit led to increase of δ13C, which was more pronounced in CNPAE222 (13% in young leaves) when compared to CNPAE183 (11% in young leaves). In both provenances, δ13C was less negative in young as compared to mature tissues. Significant and direct correlations between stem bark and leaf δ13C and leaf-level intrinsic water use efficiency were observed. Contrasting results, particularly on T and δ13C, suggest the existence of genetic diversity for water relations and metabolic traits linked to drought tolerance in J. curcas. Using stem bark or leaf δ13C measurements as the basis for large-scale screening of water-use efficient genotypes should be considered.

Effect of Plant Identity in Wheat Mixtures on English Grain Aphid (Sitobion avenae) Control

ABSTRACTField experiments have demonstrated that wheat mixtures differ in their ability to regulate aphid populations. To further investigate the effectiveness of wheat mixtures (Triticum aestivum and Triticum turgidum) in controlling aphids, we conducted both laboratory and greenhouse experiments. Specifically, we assessed the associational resistance of two wheat mixtures (Florence‐Aurora with Forment, Florence‐Aurora with Montcada), and their respective monocultures, in different stages of the aphid host selection process. We analysed aphid acceptance rate, population growth, and load under different wheat treatments. Additionally, we characterised wheat aboveground biomass and nitrogen content as important functional traits for aphid resistant. Aphid acceptance decreased in plants of cv. Forment when exposed to volatiles from undamaged Florence‐Aurora plants, whereas the other tested combinations tested had no effect. Aphids performed differently in the two mixtures: Florence‐Aurora mixed with Forment significantly reduced aphid population growth and load compared to the monocultures, whereas the combination of Florence‐Aurora with Montcada wheat had no effect on aphid performance. The plant–plant interactions also modified the analysed traits. Nitrogen content of Florence‐Aurora wheat plants was reduced when mixed with Forment wheat, which may explain the lower aphid load observed in plants of cv. Florence‐Aurora when mixed with plants of cv. Forment. However, mixing wheats with similar aboveground biomass resulted in an increase in the average biomass of plants of both cultivars which could have led to a higher aphid population. The data supports the idea of right neighbour, as the benefits of wheat mixtures for aphid control were determined by the identity of the combined plants (or species). Finally, our results suggest that associating wheats with different traits may promote facilitative interactions, which in turn enhances associational resistance, whereas the combination of wheats with similar traits may result in competitive interactions that may hinder aphid control benefits.

Harvesting Light: The Interrelation of Spectrum, Plant Density, Secondary Metabolites, and Cannabis sativa L. Yield

The approaching legalisation and associated increasing demand for medicinal and recreational Cannabis sativa L. will lead to a growing relevance for lighting systems designed for Cannabis sativa L. The interplay between plant density, light spectrum, light distribution, yield, and secondary metabolite distribution within the plant has not yet been studied. To fill this knowledge gap, a CBD-dominant Cannabis sativa L. strain was grown in a greenhouse experiment with two plant densities (2.66 and 12 plants −1 m−2) under two different light spectra. The chosen light spectra were two LED fixtures, Solray385 (SOL) and AP67, with an R: FR ratio of 12.9 and 3.7, respectively. The results indicated that light-induced effects on individual plants can be transferred to the plant stock. A low R: FR ratio induced a 16% increase in dry flower yield in the last ten days of flowering, while a change in the light spectrum could increase the potential maximum plant density per square metre. The two spectra did not affect (CBD + CBDA) yield, as a lower flower yield compensated for a higher concentration. CBDA concentration was not significantly affected by plant density. In contrast, the higher density led to an increased total cannabidiol concentration (CBD + CBDA) and altered the distribution of terpenes. Here, the light distribution over the plant stock is particularly decisive, as a more homogenous illumination led to an increased terpene concentration of up to 41%. A Photon Conversion Efficacy (PCE) of 0.05 g mol−1 under SOL and 0.06 g mol−1 under AP67 was achieved. Plants in the centre under the highest light intensity of 1200 PAR showed up to 48% reduced efficacy. These results strongly suggest that light intensity needs to be fine-tuned to the cultivation system to prevent a reduction in efficacy, resulting in yield and quality losses.

Impacts of soil type on the temporal dynamics of antibiotic resistance gene profiles following application of composted manure

Farmland application of composted manure is associated with a risk of dissemination of antibiotic resistance genes (ARGs) in agricultural soils. However, the impact of soil type on the temporal dynamics of ARGs in agricultural soil remains largely unclear. The aims of this study were to study the persistence of composted manure-derived ARGs in six soil types representative for Chinese agriculture and to explore the underlying environmental drivers of soil ARG profiles in a controlled greenhouse experiment. Temporal dynamics of manure-derived ARGs was strongly affected by soil type. High persistence of fertilizer-derived ARGs was evident in red soil, yellow soil and sierozem soil, while a rapid decrease to near pre-fertilization levels (low persistence) was observed in yellow-brown soil, black soil and brown earth soil. The distribution of ARGs was linked to soil properties such as soil texture, pH and concentrations of heavy metals. More complex co-occurrence networks of ARGs and bacteria in red soil, yellow soil, and sierozem soil suggested a higher dissemination potential, which was consistent with the significantly increased abundance of MGEs in these three types of soils. Our findings highlight the necessity for developing tailored fertilization strategies for different soil types to mitigate environmental dissemination of ARGs.

Soil Biocrusts May Exert a Legacy Impact on the Rhizosphere Microbial Community of Plant Crops

Biological soil crusts (biocrusts) play important ecological roles in many ecosystems, but their legacy effects in subtropical agricultural systems are poorly understood. This study investigated how biocrusts impact soil properties and subsequent crop rhizosphere microbiomes. Soil with (+BC) and without (−BC) biocrusts was cultivated and used to grow pepper plants in a greenhouse experiment. Soil physicochemical properties and microbial communities in the pre-planting soils, and microbial communities in crop rhizosphere were analyzed. The results showed that soils with biocrust had significantly higher organic matter, total nitrogen, alkaline hydrolyzable nitrogen, total phosphorus, and total potassium content. Microbial community structures differed significantly among treatments, with −BC soils exhibiting higher microbial diversity in pre-planting conditions, while +BC soils showed higher diversity in crop rhizosphere soils. Soil properties, especially extractable potassium, total nitrogen, and organic matter content, were significantly correlated with rhizosphere microbial community structure. Additionally, our results showed that the first principal coordinate (PCoA1) of soil microbial community structure was significantly correlated with rhizosphere microbiota. Multiple regression analysis revealed that pre-planting soil microbial diversity indices and certain soil physicochemical properties could predict crop rhizosphere soil microbial diversity. Our results demonstrate that biocrusts can enhance soil fertility and alter microbial communities in subtropical agricultural soils, with persistent effects on the crop rhizosphere microbiome. This study provides new insights into the ecological legacy of biocrusts in managed subtropical ecosystems and their potential agricultural implications.

Exploring Trichoderma Diversity for Sustainable Disease Management in Lolium perenne Against Fusarium avenaceum

AbstractFusarium species represent a significant threat to pasture health, necessitating the development of sustainable solutions. This study explores the potential of regionally adapted Trichoderma isolates for controlling Fusarium avenaceum and promoting plant growth in the grasslands of the Iberian Peninsula. To this end, seven Trichoderma isolates (belonging to T. koningiopsis, T. koningii and T. gamsii) were obtained from soils of Extremadura and then evaluated as potential biocontrol agents against Fusarium avenaceum. For the purposes of this evaluation, water was used as a negative control, while a commercial Trichoderma product served as a positive control. An initial in vitro evaluation revealed that six Trichoderma isolates significantly inhibited F. avenaceum in a dual culture assay, reducing pathogen growth by 18 to 49%. Additionally, two of the isolates showed antifungal potential during the evaluation of their culture filtrates. Subsequently, two greenhouse assays were conducted to assess the effects of Trichoderma isolates and the pathogen on the development of Lolium perenne. One focused on seed germination and the other on established plants. The greenhouse experiments indicated that T08 (T. koningiopsis), T14 (T. koningii), and T19 (T. gamsii) significantly improved seed germination and plant growth, even outperforming the positive control on total dry matter in pathogen-infected plants during the postemergence test. Our study highlights the potential of Trichoderma isolates, particularly T08, T14, and T19, to boost plant growth and control Fusarium avenaceum in Lolium perenne. It emphasizes the importance of in planta testing and reveals the varying effects of the isolates throughout the plant cycle.

Synergistic effect of pyridate-based herbicide mixtures for controlling multiple herbicide-resistant kochia

Abstract Multiple herbicide classes resistant (MHCR) kochia poses a serious concern for producers in the Central Great Plains, including western Kansas. Greenhouse and field experiments were conducted at Kansas State University Research and Extension Centers near Hays and Garden City, KS to evaluate pyridate-based postemergence (POST) herbicide mixtures for controlling MHCR kochia. One previously confirmed MHCR population (resistant to atrazine, glyphosate, dicamba, and fluroxypyr) and a susceptible (SUS) kochia population were tested in a greenhouse study. The kochia population at Hays field site was resistant to atrazine, dicamba, and glyphosate while kochia population at Garden City site was resistant to atrazine and glyphosate. Colby’s analysis revealed synergistic interactions when pyridate was mixed with atrazine, dicamba, dichlorprop-p, fluroxypyr, glyphosate, or halauxifen/fluroxypyr and resulted in ≥94% control and shoot dry biomass reduction of MHCR kochia in a greenhouse study. Similarly, synergistic interactions were observed for MHCR kochia control in fallow field studies at both sites when pyridate was mixed with glyphosate or atrazine. Kochia control was increased from 26% to 90% with the application of glyphosate + pyridate and from 28% to 95% with atrazine + pyridate at both sites as compared to separate applications of glyphosate or atrazine. This is the first report for such a strong synergistic effect for both glyphosate and atrazine mixtures with pyridate on a weed resistant to both. All other pyridate-based herbicide mixtures showed an additive interaction and resulted in better control of MHCR kochia (87 to 100%) as compared to their individual applications (23 to 92%) across both sites except 2,4-D. These results suggest that pyridate can play a crucial role in various POST herbicide mixtures for effective control of MHCR kochia.

Structured, Inbred and Plastic: the Genome and Population Genetics of the weed False cleavers (Galium spurium)

Abstract False cleavers (Galium spurium L.) is an aggressive weed from the Rubiaceae. Here we assemble a chromosome scale draft of its genome, laying the foundations for determining the genetic basis of auxinic herbicide resistance and for systematic research into its polyphyletic genus. We use the genome to examine the population genetics in material from the Canadian Prairies and, in concert with a common greenhouse experiment, to examine whether the phenotypic variation observed in the field results primarily from genetic or environmental factors. The genome assembly covers approximately 85% of G. spurium’s expected 360Mbp genome size with 94% of BUSCO genes complete and most single copy (89%). Approximately 37% of the genome is repetitive elements and 35,540 genes were annotated using RNA-Seq data, including 100 homologs for genes involved or, potentially involved in, herbicide resistance. The genome shows strong synteny with other members of the Rubiaceae including smooth bedstraw (Cruciata laevipes Opiz) and robusta coffee [Coffea canephora (Pierre ex Froehner]. Double digested RADseq data for the 19 populations from the Canadian Prairies indicated that G. spurium has high levels of population structure (FST = 0.54) and inbreeding (FIS =0.86) with low levels of hetrozygosity (HO = 0.02) and nucleotide diversity (π = 0.0003). Variation in flowering time and seed weight largely overlapped among populations grown in the greenhouse. A redundancy analysis investigating genotype-phenotype associations showed few associations between SNP variation and these characteristics. In contrast, the majority of SNPs under selection were associated with mericarp hook density. This suggests that for most traits, environmental variation rather than genetic variation likely underlies phenotypic differences observed in the field. Several genes of interest including several homologs involved in the assembly of the Skp1-Culliun-F-Box IR1/AFB E3 ubiquitin ligase complex (e.g. CAND1, ECR1) are located in areas of the genome with evidence of selection and are targets for further investigation.

Native woody species depend on the soil microbiome to establish on burned soils, while non‐native do not

Abstract Wildfires are important natural disturbances with profound ecological impacts. However, our understanding of how to restore plant–soil microbiome interactions following wildfires remains limited, revealing a key knowledge gap in post‐wildfire ecosystem restoration. To assess the restoration of plant‐microbiome interactions in fire‐affected ecosystems, we conducted greenhouse experiments simulating wildfire effects on soil collected from Maulino Coastal Forest of central Chile, a biodiversity hotspot. We measured the plant height and photosynthesis over 90 days, and two‐year survival probability, of three common native (Aristotelia chilensis, Nothofagus glauca and N. alessandrii) and three non‐native species (Eucalyptus globulus, Pinus radiata and Genista monspessulana) planted in three soils (unburned, burned and burned soil inoculated with the native microbiome). Available nutrient concentrations (N, P and K) and activities of microbial enzymes (dehydrogenase, β‐glucosidase and urease) were also measured over 360 days. Available nutrient concentrations were consistently higher in burned and burned‐inoculated soils than in unburned soils. Enzyme activities in unburned and burned‐inoculated soils remained higher than in burned soil, indicating that the native microbiome restored microbial enzyme activities. The increase in height over 90 days was lower in burned soils compared with unburned soils for native species. However, inoculation with the native microbiome mitigated this negative effect, resulting in height increases similar to those in unburned soils. For non‐native species, burning and inoculation had negligible effects on the height increases. Similar patterns were observed for the increase in photosynthetic rate, with native species showing a reduced rate in burned soils, which was offset by microbiome inoculation, while non‐native species were unaffected by both treatments. Survival probability of native species declined in burned soil, but was the same in burned‐inoculated soil as in unburned soil. That of non‐native species was unaffected by burning or by inoculation with the native microbiome. Synthesis and applications. Native microbiomes are evidently promising tools to safeguard ecosystem functionality and mitigate species extinction risks arising from climate change and human‐induced wildfires. We advocate integrating microbiomes into future active restoration strategies for fire‐affected ecosystems.

Protorhabditis nematodes and pathogen-antagonistic bacteria interactively promote plant health

BackgroundFertilization practices control bacterial wilt-causing Ralstonia solanacearum by shaping the soil microbiome. This microbiome is the start of food webs, in which nematodes act as major microbiome predators. However, the multitrophic links between nematodes and the performance of R. solanacearum and plant health, and how these links are affected by fertilization practices, remain unknown.ResultsHere, we performed a field experiment under no-, chemical-, and bio-organic-fertilization regimes to investigate the potential role of nematodes in suppressing tomato bacterial wilt. We found that bio-organic fertilizers changed nematode community composition and increased abundances of bacterivorous nematodes (e.g., Protorhabditis spp.). We also observed that pathogen-antagonistic bacteria, such as Bacillus spp., positively correlated with abundances of bacterivorous nematodes. In subsequent laboratory and greenhouse experiments, we demonstrated that bacterivorous nematodes preferentially preyed on non-pathogen-antagonistic bacteria over Bacillus. These changes increased the performance of pathogen-antagonistic bacteria that subsequently suppressed R. solanacearum.ConclusionsOverall, bacterivorous nematodes can reduce the abundance of plant pathogens, which might provide a novel protection strategy to promote plant health.6HVRaGfzCN9g8_uHWKg5j1Video

Nutrient limitation shortly before harvest promotes high accumulation of antioxidants in lettuce

AbstractPlants exposed to drought not only have to cope with a shortage of water, but also with a simultaneous decrease in nutrient availability. In this greenhouse experiment, the responses of antioxidants and key metabolites to 2 or 4 days of water limitation immediately prior to harvest were compared to the effect of nutrient limitation with continued water supply in lettuce leaves. Water limitation led to a faster increase in stress intensity than nutrient limitation. While moderate drought stress led to a slight increase in the antioxidant compounds studied, there was a concomitant sharp decrease in starch content. Under nutrient limitation, an increase in the content of ascorbic acid, the proportion of reduced ascorbic acid and the content of phenolic compounds, flavonoids, soluble sugars and starch was observed in the mild phase of stress. These results suggest that reducing nutrient availability shortly before harvest could be a suitable means of improving the nutritional value of crops through cultivation practices as opposed to breeding.

Hyperspectral Imaging Reveals Differential Carotenoid and Chlorophyll Temporal Dynamics and Spatial Patterns in Scots Pine Under Water Stress.

Drought-related die-off events have been observed throughout Europe in Scots pine (Pinus sylvestris L.). Such events are exacerbated by carbon starvation that is, an imbalance of photosynthetic productivity and resource usage. Recent evidence suggests that optically measurable photosynthetic pigments such as chlorophylls and carotenoids respond to water stress (WS). However, there is a lack of measurements using imaging spectroscopy, and the mechanisms linking xanthophyll-related changes in reflectance captured by the photochemical reflectance index (PRI) and chlorophyll changes in red edge position (REP) to WS are not understood. To probe this, we conducted a greenhouse experiment where 3-year-old Pinus sylvestris saplings were subjected to water limitation and followed using hyperspectral imaging (HSI) spectroscopy, water status and photosynthetic measurements. Carotenoids (e.g., xanthophyll cycle) and chlorophylls responded to WS, which was observed using the HSI-derived indices PRI and REP respectively. The spatial-temporal response in these two pigment-reflectance groupings differed. The spatial distribution of PRI represented the light intensity around the time of the measurement, whereas REP reflected the daily averaged light intensity over the experimental course. A further difference was noted upon rewatering, where the carotenoid-related PRI partially recovered but the chlorophyll-related REP did not.