Evolutionary Lineages Research Articles

A multi-trait embodied framework for the evolution of brains and cognition across animal phyla.

Among non-human animals, crows, octopuses and honeybees are well-known for their complex brains and cognitive abilities. Widening the lens from the idiosyncratic abilities of exemplars like these to those of animals across the phylogenetic spectrum begins to reveal the ancient evolutionary process by which complex brains and cognition first arose in different lineages. The distribution of 35 phenotypic traits in 17 metazoan lineages reveals that brain and cognitive complexity in only three lineages (vertebrates, cephalopod mollusks, and euarthropods) can be attributed to the pivotal role played by body, sensory, brain and motor traits in active visual sensing and visuomotor skills. Together, these pivotal traits enabled animals to transition from largely reactive to more proactive behaviors, and from slow and two-dimensional motion to more rapid and complex three-dimensional motion. Among pivotal traits, high-resolution eyes and laminated visual regions of the brain stand out because they increased the processing demands on and the computational power of the brain by several orders of magnitude. The independent acquisition of pivotal traits in cognitively complex (CC) lineages can be explained as the completion of several multi-trait transitions over the course of evolutionary history, each resulting in an increasing level of complexity that arises from a distinct combination of traits. Whereas combined pivotal traits represent the highest level of complexity in CC lineages, combined traits at lower levels characterize many non-CC lineages, suggesting that certain body, sensory and brain traits may have been linked (the trait-linkage hypothesis) during the evolution of both CC and non-CC lineages.

Origin and evolution of the blue light receptor cryptochromes (CRY1/2) in aquatic angiosperms.

Cryptochromes (CRYs), which are responsible for sensing blue light in plants, play a critical role in regulating blue light signals and circadian rhythms. However, their functions extend beyond light detection, as they also aid plants in adapting to stress and potentially other regulatory mechanisms. Aquatic angiosperms, which independently evolved from various angiosperm lineages, have developed specific adaptations to unique light qualities and environmental stressors found in aquatic habitats compared to terrestrial ones. It was hypothesized that the sequences and regulatory networks of angiosperm CRY1/2 underwent adaptive evolution in different aquatic angiosperm lineages. To test this hypothesis, we compiled comprehensive datasets consisting of 55 green plant genomes (including 37 angiosperm genomes), 80 angiosperm transcriptomes, and 4 angiosperm expression networks. Through comparative analysis, we found that CRY1 originated from a common ancestor of seed plants, whereas CRY2 originated from a common ancestor of land plants. In angiosperms, the CRY1/2 sequences of aquatic lineages exhibited positive selection, and the conserved valine-proline (VP) motif of CRY2 showed a convergent loss in two aquatic species. Co-expressed genes associated with blue light receptors (CRY) showed adaptations to aquatic environments, specifically in relation to flooding and osmotic stress. These discoveries shed light on the adaptive evolution of CRY1/2, encompassing their origins, sequences, and regulatory networks. Furthermore, these results provide valuable insights for investigating the uncharacterized functions and regulatory pathways of CRY and offer potential targets for enhancing growth and adaptation in agricultural plants.

Genomes of Microtus rodents highlight the importance of olfactory and immune systems in their fast radiation.

The characterization of genes and biological functions underlying functional diversification and the formation of species is a major goal of evolutionary biology. In this study, we investigated the fast radiation of Microtus voles, one of the most speciose group of mammals, which shows strong genetic divergence despite few readily observable morphological differences. We produced an annotated reference genome for the common vole, Microtus arvalis, and resequenced the genomes of 10 different species and evolutionary lineages spanning the Microtus speciation continuum. Our full genome sequences illustrate the recent and fast diversification of this group, and we identified genes in highly divergent genomic windows that have likely particular roles in their radiation. We found three biological functions enriched for highly divergent genes in most Microtus species and lineages: olfaction, immunity and metabolism. In particular, olfaction-related genes (mostly olfactory receptors and vomeronasal receptors) are fast evolving in all Microtus species indicating the exceptional importance of the olfactory system in the evolution of these rodents. Of note is e.g. the shared signature among vole species on Olfr1019 which has been associated with fear responses against predator odours in rodents. Our analyses provide a genome-wide basis for the further characterization of the ecological factors and processes of natural and sexual selection that have contributed to the fast radiation of Microtus voles.

Molecular phylogenetic studies on Trigonella section Ellipticae (Trifolieae, Fabaceae) from India utilising nrDNA (ITS) and cpDNA (trnL–trnF & petL–psbE)

This study highlights the critical importance of species delimitation in biodiversity conservation, focusing on the poorly understood Indian Trigonella species, with focus on T. sect. Ellipticae. Despite their ecological and socio-economic significance, these species, primarily found in the northwest Himalayas, have been inadequately catalogued and preserved. Adapted to harsh, dry environments, T. sect. Ellipticae exhibits morphological traits that complicate traditional species delimitation due to significant overlap among species boundaries. To address these challenges, we integrated molecular sequence data (nrDNA ITS and cpDNA (trnL–trnF & petL–psbE)) with morphological analysis, confirming the monophyly of Trigonella and revealing distinct evolutionary lineages within T. sect. Ellipticae. While nrDNA ITS sequences alone proved insufficient for resolving species relationships, phylogenetic investigations utilizing plastid data identified three distinct clades, enhancing taxonomic clarity. The study also suggests that observed morphological variations in T. cachemiriana may be due to phenotypic plasticity rather than distinct evolutionary lineages. We propose a new combination, T. emodi var. gracilis, to better represent the diversity within this group. Overall, this research underscores the necessity of combining molecular and morphological approaches for effective species delimitation, contributing to broader biodiversity conservation efforts in India, where many species remain inadequately catalogued. As the urgency for conservation increases, refining taxonomic frameworks is essential for ensuring that conservation strategies are based on accurate biological data.

Isolation, characterization, and application of a novel Pseudomonas fluorescens phage vB_PF_Y1-MI in contaminated milk.

The food industry has incurred substantial losses from contamination by Pseudomonas fluorescens, emphasizing the critical importance of implementing effective control strategies. Phages are potential sterilizers due to their specific killing abilities and the difficulty bacteria face in developing resistance. However, a significant barrier to their development is the lack of diversity among phage types. In this study, we characterized a novel lytic P. fluorescens phage, named vB_PF_Y1-MI. Phage vB_PF_Y1-MI displayed a latent period of nearly 10min and a high burst size of 1493 PFU/cell. This phage showed good activity over a wide range of temperature (up to 70°C) and pH (3-12). The genome of phage vB_PF_Y1-MI spans 93,233bp with a GC content of 45%. It encompasses 174 open-reading frames and 19 tRNA genes, while no lysogeny or virulence-associated genes were detected. Phylogenetic analysis positions it as a novel unassigned evolutionary lineage within the Caudoviricetes class among related dsDNA phages. Our study provides foundational insights into vB_PF_Y1-MI and emphasizes its potential as an effective biological control agent against P. fluorescens. This research offers crucial theoretical groundwork and technical support for subsequent efforts in preventing and controlling P. fluorescens contamination.

Phylogenomic analyses of the Listeriaceae family support species reclassification and proposal of a new family and new genera.

The taxonomy of the Listeriaceae family has undergone substantial revisions, expanding the Listeria genus from 6 to 29 species since 2009. However, these classifications have relied on 16S rRNA gene sequences and conventional polyphasic taxonomy, with limited use of genomic approaches. This study aimed to employ genomic tools, including phylogenomics, Overall Genomic Relatedness Indices (OGRIs), and core-genome phylogenomic analyses, to reevaluate the taxonomy of the Listeriaceae family. The analyses involved the construction of phylogenetic and phylogenomic trees based on 16S rRNA gene sequences and core genomes from 34 type strain genomes belonging to Listeriaceae family. OGRIs, which encompass Average Amino acid Identity (AAI), core-proteome AAI (cAAI), and Percentage of Conserved Proteins (POCP), were calculated, and specific threshold values of 70%, 87%, and 72-73% were established, respectively, to delimitate genera in the Listeriaceae family. These newly proposed OGRI thresholds unveiled distinct evolutionary lineages. The outcomes of this taxonomic re-evaluation were: (i): the division of the Listeria genus into an emended Listeria genus regrouping only Listeria senso stricto species; (ii): the remaining Listeria senso lato species were transferred into three newly proposed genera: Murraya gen. nov., Mesolisteria gen. nov., and Paenilisteria gen. nov. within Listeriaceae; (iii): Brochothrix was transferred to the newly proposed family Brochothricaceae fam. nov. within the Caryophanales order; (iiii): Listeria ivanovii subsp. londonensis was elevated to the species level as Listeria londonensis sp. nov.; and (iiiii): Murraya murrayi comb. nov. was reclassified as a later heterotypic synonym of Murraya grayi comb. nov. This taxonomic framework enables more precise identification of pathogenic Listeriaceae species, with significant implications for important areas such as food safety, clinical diagnostics, epidemiology, and public health.

Computational Analyses of Amino Acid Molecules in PDE7A for Elucidating their Evolutionary Diversity and Protein Interactions in Multiple Mammalian Species

This study explores the protein interactions and evolutionary conservation of phosphodiesterase type 7A (PDE7A) across different species, to identify the species with the highest similarity to humans, which has important applications in many fields such as pharmacology, comparative biology, biochemistry, oncology, endocrinology, and reproductive sciences. Computational analyses of the amino acid sequence of this enzyme revealed a common evolutionary relationship between the selected species and humans, but camels show the most variable evolutionary lineage in their PDE7A protein over time. In searches for homologous proteins, identity analysis results for four returned amino acid sequences were as follows: 91.81 ± 4.25% (mean ± SD), while the similarity between the sequences was 94.66% ± 4.55, and analysis of BLOSUM62 (Blocks Substitution Matrix 62) yielded a minimum value of 0.901 ± 0.055. All species have closely related physicochemical properties. The computational analyses revealed conserved amino acid residues of the gene across the studied species, which likely contribute to the similar expression patterns of the PDE7A gene in various animals. The findings also suggest that rats are a suitable model for gaining deeper insights into human biology.

Mitogenomic Architecture of Atlantic Emperor Lethrinus atlanticus (Actinopterygii: Spariformes): Insights into the Lineage Diversification in Atlantic Ocean.

The evolutionary history of emperors, particularly in the Atlantic and Indo-West Pacific Oceans, remains largely unmapped. This study explores the maternal lineage evolution of Lethrinids by examining the complete mitogenome of Lethrinus atlanticus, which is endemic to the Eastern Atlantic Ocean. Utilizing advanced next-generation sequencing, we found that the mitogenome spans 16,789 base pairs and encompasses 37 genes, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, and an AT-rich control region (CR). Our analysis indicates a preference for AT base pairs in the L. atlanticus mitogenome (53.10%). Most PCGs begin with the ATG codon, except for COI, which starts with GTG. Relative synonymous codon usage reveals high frequencies for alanine, leucine, proline, serine, and threonine. The ratio of nonsynonymous to synonymous substitutions suggests strong negative selection across all PCGs in Lethrinus species. Most transfer RNAs exhibit typical cloverleaf structures, with the exception of tRNA-serine (GCT), which lacks a dihydrouracil stem. Comparative analysis of conserved sequence blocks across the CRs of three Lethrinus species shows notable differences in length and nucleotide composition. Phylogenetic analysis using concatenated PCGs clearly distinguishes all Lethrinus species, including L. atlanticus, and sheds light on the evolutionary relationships among Spariformes species. The estimated divergence time of approximately 20.67 million years between L. atlanticus and its Indo-West Pacific relatives provides insights into their historical separation and colonization during the late Oligocene. The distribution of Lethrinids may be influenced by ocean currents and ecological factors, potentially leading to their speciation across the Eastern Atlantic and Indo-West Pacific. This study enhances our understanding of the genetic diversity and phylogenetic relationships within Lethrinus species. Further exploration of other emperor fish mitogenomes and comprehensive genomic data could provide vital insights into their genetic makeup, evolutionary history, and environmental adaptability in marine ecosystems globally.

Intraspecies mitogenomic variation in the Black-throated Tit (Aegithalos concinnus): conserved structure, concerted evolution of duplicate control regions and multiple distinct evolutionary lineages

The mitochondrial genome is a prominent research topic due to its indispensable role in organisms and its application in many research disciplines. However, few studies have investigated intraspecies mitogenomic variation. In this study, 69 mitogenomes of the Black-throated Tit (Aegithalos concinnus) were assembled and annotated from a large number of short reads generated using high-throughput sequencing technology. Comparative analyses revealed that mitogenomic characteristics such as length, gene and nucleotide composition, codon usage, and duplicated control regions were relatively conserved despite substantial intraspecies morphological changes. Yet, all the individuals from the subspecies A. c. iredalei had one more nucleotide in the 12S rRNA than the other studied subspecies. Phylogenetic analyses showed five distinct lineages based on the complete mitogenomes and the 13 combined protein-coding genes, whereas only four lineages were observed when using the duplicate control regions. Most interestingly, each lineage had both copies of the control regions of the comprising individuals, indicating that the paralogous control regions were more similar than the orthologous sequences from the distinct lineages. This suggested the control regions had undergone concerted evolution. The Black-throated Tit has complex evolutionary history and needs further investigating the taxonomic status of these lineages, as well as the underlying evolutionary processes. Our findings call for more research on intraspecies mitogenomic variation.

Integrative analyses of convergent adaptation in sympatric extremophile fishes.

The evolution of independent lineages along replicated environmental transitions frequently results in convergent adaptation, yet the degree to which convergence is present across multiple levels of biological organization is often unclear. Additionally, inherent biases associated with shared ancestry and variation in selective regimes across geographic replicates often pose challenges for confidently identifying patterns of convergence. We investigated a system in which three species of poeciliid fishes sympatrically occur in a toxic spring rich in hydrogen sulfide (H2S) and an adjacent nonsulfidic stream to examine patterns of adaptive evolution across levels of biological organization. We found convergence in morphological and physiological traits and genome-wide patterns of gene expression among all three species. In addition, there were shared signatures of selection on genes encoding H2S toxicity targets in the mitochondrial genomes of each species. However, analyses of nuclear genomes revealed neither evidence for substantial genomic islands of divergence around genes involved in H2S toxicity and detoxification nor substantial congruence of strongly differentiated regions across population pairs. These non-convergent, heterogeneous patterns of genomic divergence may indicate that sulfide tolerance is highly polygenic, with shared allele frequency shifts present at many loci with small effects along the genome. Alternatively, H2S tolerance may involve substantial genetic redundancy, with non-convergent, lineage-specific variation at multiple loci along the genome underpinning similar changes in phenotypes and gene expression. Overall, we demonstrate variability in the extent of convergence across organizational levels and highlight the challenges of linking patterns of convergence across scales.

A paedomorphic dwarf species, Gauthieria pumilio sp. nov. (Echinoidea: Phymosomatidae), from the Campanian (Late Cretaceous) of Hannover, Germany

AbstractA new phymosomatoid species, Gauthieria pumilio sp. nov., from lower Campanian (Late Cretaceous) deposits in the vicinity of Hannover, Germany, is described. This species is very close in its overall appearance (i.e. tuberculation and ambulacral plating pattern) to a few other species: Gauthieria radiata and the juvenile stages of the Santonian Gauthieria spatulifera and the Maastrichtian Gauthieria princeps, with which Gauthieria pumilio sp. nov. is accordingly closely related. However, it deviates from its relatives by a significantly smaller test diameter. Accordingly it is deviating from the general increase in size during the evolutionary lineage leading from the Turonian G. radiata via G. spatulifera to the Maastrichtian G. princeps. This lineage exemplified Cope's Rule through increasing test size. However, G. pumilio sp. nov. challenges this pattern with its dwarfing phenomenon, exhibiting a test diameter < 18 mm. It shares the ambulacral plating pattern with G. radiata and the juvenile stages of G. spatulifera and G. princeps, providing further insights into the genus's evolutionary history.

Ancient civilizations’ territorial borders analyzed through their cosmogonies

This paper compares the ancient Mediterranean and Mesopotamian civilizations’ concept of borders and their relation with the spaces they transformed through a comparative approach of selected ancient civilizations, putting these cosmogonies into a chronological evolutionary line. The distinct motifs, symbols, and theological frameworks are examined through secondary sources. While each of these civilizations counts with individual studies, few serious attempts have been made to address these four civilizations together. The discussion aims to set the premises of the importance of borders in contemporary urban and territorial studies when religion often has a secondary role. While they were critical elements in the definition of territorial limits in the past, their inheritance is still present in our contemporary concept of borders as producers of fears.

Meta-analysis of gonadal transcriptome provides novel insights into sex change mechanism across protogynous fishes.

Protogyny, being capable of changing from female to male during their lifetime, is prevalent in 20 families of teleosts but is believed to have evolved within specific evolutionary lineages. Therefore, shared regulatory factors governing the sex change process are expected to be conserved across protogynous fishes. However, a comprehensive understanding of this mechanism remains elusive. To identify these factors, we conducted a meta-analysis using gonadal transcriptome data from seven species. We curated data pairs of ovarian tissue and transitional gonad, and employed ratios of expression level as a unified criterion for differential expression, enabling a meta-analysis across species. Our approach revealed that classical sex change-related genes exhibited differential expression levels between the ovary and transitional gonads, consistent with previous reports. These results validate our methodology's robustness. Additionally, we identified novel genes not previously linked to gonadal sex change in fish. Notably, changes in the expression levels of acetoacetyl-CoA synthetase and apolipoprotein Eb, which are involved in cholesterol synthesis and transport, respectively, suggest that the levels of cholesterol, a precursor of steroid hormones crucial for sex change, are decreased upon sex change onset in the gonads. This implies a potential universal influence of cholesterol dynamics on gonadal transformation in protogyny.

Plio-Pleistocene Small Mammal-Based Biochronology of Eastern Anatolia and Transcaucasus

The known Plio-Pleistocene mammalian record, mainly represented by small mammals, and its biotic and geological context in the vast region of Eastern Turkey and Transcaucasus provides a sound base for regional biochronology. Recently obtained faunal associations and the main evolutionary lineages found in the region support direct correlations to the European (ELMA/MN/MQ) and the Eastern European (faunal complexes/MQR-MNR) biochronological systems. Important data on palynology, aquatic and terrestrial mollusks, and magnetostratigraphy integrate the reviewed material into a robust local biochronology. The range of standard biochrons of Early Pliocene through late Early Pleistocene and the regional Anatolian zones M-P are reliably detected. The Early Pleistocene time range (zone P) is refined based on rhizodont lagurines Borsodia and Euro-Asian larger voles Mimomys ex gr. pliocaenicus. The successive zone R for Early Pleistocene faunas with early rootless Microtini is proposed.

Charting a future for entomological taxonomy in New Zealand

ABSTRACT There is an increasing need for the identification and monitoring of insects. However, funding for entomological taxonomy, which traditionally provides the knowledge and tools for insect identification is in decline. Here, I review the history of entomological taxonomy in New Zealand and argue that the funding decline is a consequence of two broad shifts in biology. First, taxonomists test hypotheses in a qualitative manner unlike much of biology which has become increasingly quantitative. Second, there has been a shift in biology away from studying patterns and towards understanding processes and mechanisms. These scientific transformations have left the practice of taxonomy intellectually isolated from much of modern biology and led to its devaluing. I advocate for broadening taxonomy beyond the Linnaean system and to include genetic and genomic methods for identifying evolutionary lineages. This New Zealand Tree of Life would be comprised of ‘preliminary species hypotheses’ that can later be robustly tested with diverse character data and incorporated into the Linnean classification if resources and capability become available. Preliminary species hypotheses as well as associated genomic, DNA barcode, and specimen image data will support portable technologies that allow anyone to identify insects for environmental monitoring and biosecurity. This democratisation of insect identification has the potential to help build support for collections and taxonomic research. A concerted effort to accelerate the digitisation of collection data, especially genomic, DNA barcode, and specimen image data, will be necessary for implementation.

Science behind herbarium and its importance in recent years

The interest in and significance of herbarium collections for the study of plant biodiversity and evolution has significantly expanded in recent decades due to the introduction of new technologies for large‐scale, automated digitization and the availability of new techniques for DNA sequencing. These innovative methods gave rise to new initiatives with the goal of compiling a sizable molecular and phenological data set. In light of the various national projects that are currently underway and driving the study of herbarium specimens for the purpose of understanding biodiversity loss and habitat shifts as a result of climate change and habitat destruction due to human activity. Here, we showcased a number of cutting‐edge research, mini‐reviews, and technical comments that demonstrate the ever‐growing range of applications for herbarium specimens. It examines the variety of applications for which herbarium specimens are employed, the primary users' profiles of herbarium collections, patterns and systematics of biodiversity, and the evolution of lineages and traits.

A multifaceted approach to expanding conservation efforts in the Pan-Himalayan landscape

The Pan-Himalayan biogeographic domain is a significant region for biodiversity conservation and climate resilience. This region has both tropical and extratropical flora and holds ecological, cultural, and socio-economic importance. However, knowledge about the spatial distribution and threats to threatened plant species in the study area is still poorly known. In this study we evaluate the phylogenetic diversity and phylogenetic endemism of threatened flora in the region, and also examine the effect of rapid land cover transformation and landscape fragmentation between 2000 and 2020 on the preservation of distinct evolutionary lineages. Phylogenetic metrics provide a better understanding of ecological, historical, and evolutionary factors that shape plant communities in highly biodiverse regions. Our result show that current protected areas are insufficient for preserving Pan-Himalayan biodiversity, and also reveal a significant gap in conservation efforts within these areas. We highlight conservation priorities areas in the western Himalayan belt encompassing 2.43 million km2 and covering 26.73% of the total area. However, a large conservation gap encompassed 22.67% (2.06 million km2) hotspots of total study area, whereas non-hotspot priorities covered 67.62% (0.77 million km2) of the total protected area, revealing a mismatch between biodiversity hotspots and protected areas. In addition, biodiversity priority areas have been threatened by rapid land cover transformation and landscape fragmentation between 2000 and 2020. There were 6.93% increase in cropland area and 172.64% increase in impervious surface, while an increase in landscape fragmentation and a decrease in landscape cohesion in different hotspots within protected areas. The biodiversity hotspot regions emphasize the need to conserve unique evolutionary lineages and high species occurrence areas with targeted conservation strategies. Mountainous, but cross-border international cooperation is highly recommended for effective preservation strategies. Our study has implications for advancing biodiversity preservation and sustainable ecosystem management not only in the Pan-Himalayan but also in similar regions, as well as for achieving the 2030 protection goal.

Borealpox Virus: a Comprehensive Review of its Emergence and Global Recommendations

The emergence of the Borealpox virus (BRPV), formerly known as the Alaskapox virus (AKPV), in 2015 poses an intriguing scientific challenge. Despite being first discovered in Alaska, BRPV is a potential global threat, and reports of instances have raised questions about how serious it can be; especially in those with impaired immune systems. The unique characteristics of BRPV have been clarified through genomic characterization, providing insight into its evolutionary lineage and transmission dynamics. A recent death linked to BRPV highlights the difficulties presented by newly developing infectious illnesses, particularly for individuals who are already at risk. The implications of BRPV for public health call for all-encompassing management approaches; such as creating efficient treatments and customized interventions for various clinical presentations. Research and surveillance initiatives are vital for comprehending ecological reservoirs and patterns of transmission. Additionally, biosafety regulations and immunization programs are critical for controlling outbreaks and reducing the worldwide effects of BRPV. Prioritizing vaccination drive approaches, implementing stringent infection control measures, and reinvigorating disease surveillance systems are imperative for preventing BRPV. In addition, enhancing the training of frontline healthcare professionals and implementing the One Health concept are crucial measures that foster robust cooperation and adaptability, while confronting new public health concerns. A comprehensive review of the emergence and consequences of the Borealpox virus is necessary to direct future investigations and global public health campaigns. By utilizing interdisciplinary approaches and promoting global collaboration, we may successfully alleviate the danger presented by BRPV and protect public health across borders.

Isolation, identification and multi-locus sequence typing of Phytophthora capsici from capsicum fields and its cross-infectivity in different crop species

Phytophthora capsici is a major soil-borne oomycete plant pathogen, which severely affects the productivity of peppers including Capsicum annuum L., by causing fruit rot, root rot, and foliar blight diseases. It has a broad host range beyond Capsicum species and evolves rapidly to find new potential hosts for survival under different climatic conditions. In the present study, P. capsici was isolated from soil using castor seed baiting, and characterized through growth patterns and spore morphology. The species identification and molecular characterization were achieved through multi-locus sequence and phylogenetic analysis of three genomic loci (ITS, tef1 and cox), and also attributed given P. capsici isolate Pc_UHF into India-specific ITS-based evolutionary lineage Pc-X. Interestingly, dN/dS estimates revealed reasonably high positive selection in the tef1 gene, which could have possible implications on the pathogen's adaptation and/or virulence. Pathogenicity of this isolate was tested in three commercially growing bell pepper varieties and also in other crop species using detached leaf and/or in planta disease screening. Differential disease symptoms were induced by Pc_UHF in three bell pepper varieties, such as both collar rot and foliar blight symptoms observed in "Yolo Wonder" and "California Wonder", whereas only foliar blight symptoms were recorded in "Solan Bharpur". Furthermore, cross-pathogenicity was also recorded in tomato, citrus, cucumber and eggplant. This is the first report of molecular characterization and cross-pathogenically assessment of P. capsici isolate from farm soils in the North Western Himalayan region of India, which has a dynamic virulence profile and distinct host range.

Phylogeography of the ambrosia beetle Euwallacea interjectus (Coleoptera: Curculionidae: Scolytinae): an emerging poplar pest and its Fusarium mutualists from poplar plantations in China.

Native to Asia, Euwallacea interjectus (Blandford) (Coleoptera: Curculionidae: Scolytinae) is a destructive and invasive pest of live trees, and now it has been found in the United States and Argentina. In recent years, this pest appeared in high densities in poplar monocultures from Eastern China (Jiangsu and Shanghai) and Argentina and caused significant poplar mortality. However, the origin of the pests related to tree damage and the Fusarium mutualists from some poplar zones in China remained unclear. Here, we provided a broader phylogeographic analysis of E. interjectus based on the mitochondrial gene (cytochrome c oxidase I) to determine the global genetic structure of this species. Five mitochondrial lineages were found in the native area. Populations introduced to the United States were originated from 4 localities. The Argentine population was derived from Japan. The species was observed with strikingly high level of cytochrome c oxidase I intraspecific divergence that exceeded interspecific divergence, but the high intraspecific variation was correlated with geographical locations among the native populations. Two nuclear genes (arginine kinase and carbamoyl-phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase) were more conservative, and intraspecific differences were lower than interspecific differences. The mitochondrial genetic variation was probably caused by evolution of lineages among geographically isolated populations. But it is immature to infer the existence of cryptic species based on cytochrome c oxidase I differences. All samples collected from poplar populations were indigenous and formed close relationship with a specimen from eastern and southern China. Surprisingly, pests from poplar populations in Jiangsu and Shanghai showed different haplotypes and mutualists. This suggested that the control strategies should consider the genetic and mutualistic diversity of beetles at different poplar localities.