The origin and evolution of the Shipenggou gold deposit in the Shipenggou–Jiapigou–Jinchengdong (SJJ) gold belt in Jilin Province, Northeast China, remain poorly understood. In this study, fluid inclusion and C–H–O–S isotopes from the Shipenggou deposit were investigated to clarify the fluid evolution and mineralisation process. The gold mineralisation is hosted in the biotite plagiogneiss of the Archaean Sandaogou Formation and is dominated by gold–bearing quartz veins. The orebodies are controlled by NNE– and NEE–striking brittle–ductile structures. Four stages of mineralisation have been identified: (I) milky quartz–minor pyrite, (II) quartz–pyrite–minor gold, (III) gold–quartz–polymetallic sulphide, and (IV) quartz–carbonate. Fluid inclusions were identified as four types: aqueous (VL–type), CO2–bearing (CL–type), CO2–rich (LC–type), and carbonic (PC–type). VL–, CL–, LC–, and PC–type FIs were developed within quartz from Stages I–II. Stage III quartz contains both CL– and VL–type FIs. Only VL–type FIs were observed in calcite from Stage IV. The total homogenisation temperatures (Tht) of FIs in Stages I, II, III, and IV are of 281.5–324.8, 215.5–269.1, 151.2–198.3, and 125.4–149.5 °C with salinities of 2.8–13.2, 2.8–9.6, 3.2–8.4, and 3.0–5.9 wt% NaCl eqv. Laser Raman spectroscopy analysis indicated the CL– and PC–type FIs from Stages I and II contain CO2 and minor quantities of CH4. The ore–forming fluids have developed from a medium temperature, low–medium salinity immiscible NaCl–H2O–CO2 ± CH4 system to a low temperature, low salinity homogeneous NaCl–H2O system. The HO isotopic compositions indicate that the initial ore–forming fluids were mantle–derived magmatic water. Subsequently, the ore–forming fluids were gradually joined by meteoric water. δ13C values indicate C in the fluids have originated from organic matter. Organic matter may have originated from the mantle, which mixed crust materials influenced by the subduction of the Palaeo–Pacific slab. In–situ, S isotope data of pyrite indicate that the origin of sulphur at the Shipenggou deposit is the mantle containing a crust component. Based on the above analysis results, the Shipenggou gold deposit is a mesothermal magma-hydrothermal vein–type gold deposit.