Evidence Of Sexual Reproduction Research Articles

From Chaos Comes Order: Genetics and Genome Biology of Arbuscular Mycorrhizal Fungi.

Arbuscular mycorrhizal fungi (AMF) are obligate mutualists that can enhance nutrition and growth of their plant hosts while providing protection against pathogens. AMF produce spores and hyphal networks that can carry thousands of nuclei in a continuous cytoplasm, with no evidence of sexual reproduction. This review examines the impact of genomic technologies on our view of AMF genetics and evolution. We highlight how the genetics, nuclear dynamics, and epigenetics of these prominent symbionts follow trends preserved in distant multinucleate fungal relatives. We also propose new avenues of research to improve our understanding of their nuclear biology and their intricate genetic interactions with plant hosts.

Evidence of Sexual Reproduction in Out-Planted Coral Colonies

Intervention techniques to restore coral communities have become an important management tool to help recover and rehabilitate damaged reefs. The direct transplantation of healthy coral fragments is the most common method; however, there is controversy in the long-term success, as using coral clones may diminish the genetic diversity of the coral population. Genetic recombination can be achieved when the coral colony produces gametes and eventually reproduces; therefore, it is important to provide evidence that restored colonies produce gametes as their naturally recruited counterparts with similar colony size (age). Natural and restored Pocillopora coral colonies of the same size range (between 40 and 50 cm in diameter) were tagged and sampled during the rainy season to determine gamete maturation. Our results show no differences in the reproductive activity among colonies: natural and restored coral colonies matured gametes from June to October, with a peak in sexually active coral colonies in July. Also, gamete malformation was not observed. During the gamete production period, the area’s temperature ranged from 27.9 to 30.02 °C. The results’ evidence that coral colonies formed through active restoration contribute not only to the increase in live coral cover as seen in previous studies but potentially contribute in the medium term (>5 years after out-planting) to the production of larvae and local and subsidiary recruitment, since they exhibit the same reproductive patterns as their naturally formed counterparts and no differences in the reproductive activity among coral colonies. Therefore, long-term coral restoration projects contribute to maintaining the live coral cover and the genetic diversity in the region, eventually rehabilitating the coral community.

Invasive Californian death caps develop mushrooms unisexually and bisexually

Canonical sexual reproduction among basidiomycete fungi involves the fusion of two haploid individuals of different mating types, resulting in a heterokaryotic mycelial body made up of genetically different nuclei. Using population genomics data and experiments, we discover mushrooms of the invasive and deadly Amanita phalloides can also be homokaryotic; evidence of sexual reproduction by single, unmated individuals. In California, genotypes of homokaryotic mushrooms are also found in heterokaryotic mushrooms, implying nuclei of homokaryotic mycelia are also involved in outcrossing. We find death cap mating is controlled by a single mating type locus, but the development of homokaryotic mushrooms appears to bypass mating type gene control. Ultimately, sporulation is enabled by nuclei able to reproduce alone as well as with others, and nuclei competent for both unisexuality and bisexuality have persisted in invaded habitats for at least 17 but potentially as long as 30 years. The diverse reproductive strategies of invasive death caps are likely facilitating its rapid spread, suggesting a profound similarity between plant, animal and fungal invasions.

Genetic Diversity of Lecanosticta acicola in Pinus Ecosystems in Northern Spain.

Lecanosticta acicola is one of the most damaging species affecting Pinus radiata plantations in Spain. Favourable climatic conditions and unknown endogenous factors of the pathogen and host led to a situation of high incidence and severity of the disease in these ecosystems. With the main aim of understanding the factors intrinsic to this pathogenic species, a study of the population structure in new established plantations with respect to older plantations was implemented. The genetic diversity, population structure and the ability of the pathogen to spread was determined in Northern Spain (Basque Country), where two thirds of the total Pinus radiata plantations of Spain are located. From a total of 153 Lecanosticta acicola isolates analysed, two lineages were present; the southern lineage, which was prevalent, and the northern lineage, which was scarce. A total of 22 multilocus genotypes were detected with a balanced composition of both mating types and evidence for sexual reproduction. In addition to the changing environmental conditions enhancing disease expression, the complexity and diversity of the pathogen will make it difficult to control and to maintain the wood productive system fundamentally based on this forest species.

Ethnobotanical Diversity of Cassava (Manihot esculenta Crantz) in the Peruvian Amazon

Cassava is a key tropical crop that serves as a major source of nutrition throughout equatorial South America, Africa, and Asia. Genetic and paleoethnobotanical findings indicate that it was first domesticated on the southern margin of Amazonia ~10,000 years ago. However, anthropogenic processes underlying its subsequent diversification remain unclear. To shed light on them, we investigated agricultural practices and phenotypic variation in cassava on the upper Amazon River, in Loreto, Perú. We interviewed subsistence growers on five Amazon tributaries and collected data on the husbandry, morphology, and nutritional composition of their crops. We found 45 distinct cultivars. Many of their morphological features, such as stature and leaf dimensions, exhibited expected phenotype–phenotype associations. However, starch content showed no association with any other phenotype (mean p = 0.57), suggesting it has been under selective pressure exerted by growers. In addition, all cultivars’ tubers had cyanide content under 25 ppm, a low level of toxicity by global standards. Evidence of sexual reproduction and cultivar hybridization was common and a probable source of new variation. However, cultivars from different rivers showed little evidence of differentiation, possibly as the result of human transport. Thus, human influences in the region simultaneously enhance and constrain variability in the crop.

Epidemic spread of smut fungi (Quambalaria) by sexual reproduction in a native pathosystem

Quambalaria are fungal pathogens of Corymbia, Eucalyptus and related genera of Myrtaceae. They are smut fungi (Ustilaginomycota) described from structures that resemble conidia and conidiophores. Whether these spore forms have asexual or sexual roles in life cycles of Quambalaria is unknown. An epidemic of Q. pitereka destroyed plantations of Corymbia in New South Wales and Queensland (Australia) in 2008. We sampled 177 individuals from three plantations of C. variegata and used AFLPs to test hypotheses that the epidemic was spread by asexual reproduction and dominated by a single genotype. There was high genotypic diversity across ≥600 AFLP loci in the pathogen populations at each plantation, and evidence of sexual reproduction based on neighbour-net analyses and rejection of linkage disequilibrium. The populations were not structured by host or location. Our data did not support a hypothesis of asexual reproduction but instead that Q. pitereka spreads exclusively by sexual reproduction, similar to life cycles of other smut fungi. Epidemics were exacerbated by monocultures of Corymbia established from seed collected from a single provenance. This study showcases an example of an endemic pathogen, Q. pitereka, with a strictly outbreeding life cycle that has caused epidemics when susceptible hosts were planted in large monoculture plantations.

Weather Variables Associated with Spore Dispersal of Lecanosticta acicola Causing Pine Needle Blight in Northern Spain.

In the last decade, the impact of needle blight fungal pathogens on the health status of forests in northern Spain has marked a turning point in forest production systems based on Pinus radiata species. Dothistroma needle blight caused by Dothistroma septosporum and D. pini, and brown spot needle blight caused by Lecanosticta acicola, coexist in these ecosystems. There is a clear dominance of L. acicola with respect to the other two pathogens and evidence of sexual reproduction in the area. Understanding L. acicola spore dispersal dynamics within climatic determinants is necessary to establish more efficient management strategies to increase the sustainability of forest ecosystems. In this study, spore counts of 15 spore traps placed in Pinus ecosystems were recorded in 2019 and spore abundance dependency on weather data was analysed using generalised additive models. During the collection period, the model that best fit the number of trapped spores included the daily maximum temperature and daily cumulative precipitation, which was associated to higher spore counts. The presence of conidia was detected from January and maximum peaks of spore dispersal were generally observed from September to November.

Evidence of parthenogenetic populations from the Paratanytarsus laccophilus species group (Diptera: Chironomidae) in the Alaskan Arctic

Parthenogenesis, reproduction without fertilization, is not common in the Chironomidae (Diptera), a family of insects with more than 6,000 described species. Nonetheless, parthenogenetic species and strains have been documented in at least three subfamilies (the Chironominae, Orthocladiinae, and Telmatogoninae), spanning 17 genera and ~30 species. One such species, Paratanytarsus laccophilus Edwards 1929, is known to be parthenogenetic in a small portion of its range in Finland, with most other European populations of this species showing evidence of sexual reproduction. We present evidence of parthenogenetic populations from the Paratanytarsus laccophilus species group in the Nearctic, specifically a High Arctic site near Utqiaġvik (formerly Barrow), Alaska. During May-July of 2015 and 2016, we sampled emerging adult chironomids and pupal exuviae daily to document insect emergence phenologies. Across 15 local populations, all 623 pupal exuviae collected from the P. laccophilus species group were female. Larvae reared from two populations under controlled temperature treatments emerged as female adults (N=37). When isolated, these reared female adults oviposited, and eggs hatched successfully. These progeny were reared for another 12-13 days, reaching second instar larvae when they were preserved at the end of our field season. Taken together, this evidence strongly indicates parthenogenesis from the P. laccophilus species group at this location. This species was not previously documented at Utqiaġvik. Although parthenogenetic, their emergence at this location was highly synchronized. In the harsh environment of arctic Alaska, the fitness rewards of parthenogenesis are likely great. Indeed, chironomid parthenogenesis in the northern hemisphere is most commonly documented from far-northern extremes and in extreme habitats.

Evidence for sexual reproduction and fertile oospore production byPlasmopara viticolaon the leaves of partially resistant grapevine cultivars

Downy mildew, caused by Plasmopara viticola, is a highly destructive disease of grapevine. In recent decades, European breeding programs for disease resistance have led to the creation of new cultivars resistant to downy mildew. This resistance limits mycelium growth and the sporulation of P. viticola, thereby decreasing disease epidemics due to the asexual reproduction of the pathogen. However, we still lack biological insight into the effects of partial host resistance on pathogen survival during the sexual stage of its lifecycle. We present here the results of a two-year experiment in which we assessed the production of sexual forms of P. viticola (oospores) and the success of subsequent infections on resistant cultivars with the Rpv1 and Rpv3 loci. We found that disease resistance had little effect on the sexual cycle of the pathogen. Plasmopara viticola produced four times more oospores on susceptible Vitis vinifera cultivars than on disease-resistant cultivars. Macrosporangia resulting from the germination of oospores were found on both resistant and susceptible genotypes, and were produced in surprisingly large numbers on some Rpv1 genotypes. Rates of primary contamination due to macrosporangia were lower on Rpv3 than on conventional cultivars, but higher on Rpv1 genotypes. Thus, P. viticola can complete its lifecycle (both asexual and sexual phases) on partially resistant grapevine cultivars. The maintenance of downy mildew populations from one year to the next presents a significant challenge to the sustainability of genetic resistance in grapevine.

Sexual Reproduction of Kudzu (Pueraria montana [Lour.] Merr.) in Oklahoma

Non-native invasive plants pose major threats to biodiversity across the globe. In the southeastern United States, kudzu ( Pueraria montana [Lour.] Merr.) was introduced as a flowering, ornamental vine. In many areas, it quickly escaped cultivation and has caused major disruption to native ecosystems. Over the past two decades, kudzu has gradually spread north and west, being found as far north as Illinois and Indiana, and as far west as Kansas and Oklahoma. Only recently has the species distribution been thoroughly assessed in Oklahoma, and these studies have found its statewide range to be more extensive than previously thought. As a result of the species being understudied in the region, the reproductive ecology of kudzu in Oklahoma has gone largely unexamined. Our research provides evidence of sexual reproduction at two sites in southeastern Oklahoma. This is the first documentation of germination of kudzu in Oklahoma. While kudzu reproduces primarily through rhizomatous vegetative growth, the production of viable seeds is essential to the maintenance of genetic diversity and is often important at range limits. This research, coupled with further plant demographic research, could provide key details surrounding the potential further spread of kudzu in Oklahoma.

Evidence for Sexual Reproduction: Identification, Frequency, and Spatial Distribution of Venturia effusa (Pecan Scab) Mating Type Idiomorphs.

Venturia effusa (syn. Fusicladium effusum), causal agent of pecan scab, is the most prevalent pathogen of pecan (Carya illinoinensis), causing severe yield losses in the southeastern United States. V. effusa is currently known only by its asexual (conidial) stage. However, the degree and distribution of genetic diversity observed within and among populations of V. effusa are typical of a sexually reproducing fungal pathogen, and comparable with other dothideomycetes with a known sexual stage, including the closely related apple scab pathogen, V. inaequalis. Using the mating type (MAT) idiomorphs from V. inaequalis, we identified a single MAT gene, MAT1-1-1, in a draft genome of V. effusa. The MAT1-1-1 locus is flanked by two conserved genes encoding a DNA lyase (APN2) and a hypothetical protein. The MAT locus spanning the flanking genes was amplified and sequenced from a subset of 14 isolates, of which 7 contained MAT1-1-1 and the remaining samples contained MAT1-2-1. A multiplex polymerase chain reaction screen was developed to amplify MAT1-1-1, MAT1-2-1, and a conserved reference gene encoding β-tubulin, and used to screen 784 monoconidial isolates of V. effusa collected from 11 populations of pecan across the southeastern United States. A hierarchical sampling protocol representing region, orchard, and tree allowed for analysis of MAT structure at different spatial scales. Analysis of this collection revealed the frequency of the MAT idiomorphs is in a 1:1 equilibrium of MAT1-1:MAT1-2. The apparent equilibrium of the MAT idiomorphs provides impetus for a renewed effort to search for the sexual stage of V. effusa. [Formula: see text] Copyright © 2018 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Genetic Structure of the Rice Blast Pathogen (Magnaporthe oryzae) over a Decade in North Central California Rice Fields

Rice blast, caused by the ascomycete Magnaporthe oryzae, is one of the most destructive rice diseases worldwide. Even though the disease has been present in California since 1996, there is no data for the pathogen population biology in the state. Using amplified fragment length polymorphisms and mating-type markers, the M. oryzae population diversity was investigated using isolates collected when the disease was first established in California and isolates collected a decade later. While in the 1990 samples, a single multilocus genotype (MLG) was identified (MLG1), over a decade later, we found 14 additional MLGs in the 2000 isolates. Some of these MLGs were found to infect the only rice blast-resistant cultivar (M-208) available for commercial production in California. The same samples also had a significant decrease of MLG1. MLG1 was found infecting the resistant rice cultivar M-208 on one occasion whereas MLG7 was the most common genotype infecting the M-208. MLG7 was identified in the 2000 samples, and it was not present in the M. oryzae population a decade earlier. Our results demonstrate a significant increase in genotypic diversity over time with no evidence of sexual reproduction and suggest a recent introduction of new virulent race(s) of the pathogen. In addition, our data could provide information regarding the durability of the Pi-z resistance gene of the M-208. This information will be critical to plant breeders in developing strategies for deployment of other rice blast resistance genes/cultivars in the future.

Population Diversity of Grape Phylloxera in California and Evidence for Sexual Reproduction

Until recently the foliar forms of grape phylloxera have been absent or very rare in California, and nodosities have not been common on resistant rootstocks. Foliar phylloxera are now widely spread in the mothervine plantings of grape rootstock nurseries in Yolo and Solano counties. There have also been frequent observations of nodosities on resistant rootstocks. To determine the genetic relationships within and among these seemingly new types of phylloxera, collections were made across California from 2009 to 2011. Foliar-feeding phylloxera strains were collected from rootstock mothervines at the National Clonal Germplasm Repository in Winters, CA, the University of California, Davis (UCD) vineyards, and six commercial rootstock nursery plantings in Yolo and Solano Counties. Root-feeding samples were collected from a rootstock trial at the UCD Oakville research station vineyard in Napa County, which had previously been sampled in 2006 and 2007. Root-feeding samples were also collected from commercial vineyards in Napa and Sonoma Counties, and the UCD vineyard. All samples were tested and genotyped using simple sequence repeat (SSR) markers and the genetic structure of the populations was analyzed. The results identified four genetically distinct populations of phylloxera in California, which were named Davis, Foliar, Napa1 and Napa2. Davis, Napa1 and Napa2 were composed of root-feeding samples. Multilocus genotypes (MLG) with identical DNA fingerprint profiles were detected in the 2006–07 samples from the Oakville research station. More genetic divergence was observed in the Davis, Napa1 and Napa2 populations with evidence for sexual reproduction between members of Napa1 and Napa2. The Foliar population consisted of only foliar-feeding samples with MLGs that were not detected prior to 2009 and asexual reproduction was clearly the primary reproductive mode.

Unique clones of the pitch canker fungus, Fusarium circinatum, associated with a new disease outbreak in South Africa

Pitch canker of pines is caused by the fungus Fusarium circinatum. In South Africa, this pathogen has mostly been a nursery problem. From 2005, however, outbreaks of pitch canker have been reported from established Pinus radiata and P. greggii in the Western and Eastern Cape Provinces. Most recently, pitch canker-like symptoms were observed on 10-year-old P. greggii trees in a plantation in the midlands of the KwaZulu-Natal (KZN) Province. The aim of this study was to: (i) identify the causal agent of the observed symptoms, (ii) determine the genetic diversity, and (iii) the mode of reproduction of this fungal population. Furthermore, the aggressiveness of isolates from these trees was compared with that of isolates obtained previously from P. patula in South Africa. Isolates from the P. greggii trees in KZN were confirmed as F. circinatum based on both morphology and DNA sequence analyses. Microsatellite marker analyses revealed the presence of five genotypes of F. circinatum, not previously reported from other plantations in South Africa, with one of these genotypes being dominant. These genotypes were all pathogenic to P. patula and P. elliottii. No evidence of sexual reproduction was detected in the KZN population of the fungus. This was consistent with the fact that isolates from P. greggii were all of the MAT-2 mating type, in contrast to previously collected isolates from across South Africa that included both mating types. The results suggest that the outbreak of pitch canker on P. greggii in KZN represents a separate introduction of F. circinatum into the region with important implications for managing the disease.

Lack of evidence for sexual reproduction in field populations of Colletotrichum lentis

Abstract Species in the genus Colletotrichum have mating systems that deviate from those of other genera in the Ascomycota, and for many species only the anamorph is known. The teleomorph of Colletotrichum lentis is inducible in vitro , but has not been reported in nature. A molecular population study based on amplified fragment length polymorphisms was conducted on 179 field isolates from lentil fields in the Canadian province of Saskatchewan. More than 94% similarity was observed among isolates, and 130 of 131 isolates sampled from a single field shared the same haplotype. Genotypic diversity was equal to 0.47, and association indices I A and r ¯ d were significantly different from zero. A linkage between mating incompatibility group (mIG) 1 and race 0 was observed among field isolates, but F 1 isolates from a cross between an mIG-1/race 0 and an mIG-2/race 1 isolate revealed free recombination of both traits. Results indicate that this fungus does not, or very rarely, sexually reproduces under field conditions.

Recombination detection in Aspergillus fumigatus through single nucleotide polymorphisms typing.

The first evidence of sexual reproduction in Aspergillus fumigatus was reported in 2009. Nevertheless, it remains difficult to understand how A. fumigatus is able to reproduce through this mode in its natural environment and how frequently this occurs. The aim of this study was to analyse single nucleotide polymorphisms (SNPs) in a set of environmental and clinical isolates of A. fumigatus to detect signatures of recombination. A group of closely related Portuguese A. fumigatus isolates was characterized by mating type and the genetic diversity of the intergenic regions, microsatellites and multilocus sequence typing (MLST) genes. A group of 19 SNPs, organized in nine association groups and inherited in blocks, was identified and compared. Several variations on the association panel were detected on reference isolates of A. fumigatus AF293 and A1163, the sequence types available at MLST database and six clinical and environmental Portuguese isolates. About one to four haplotype disruptions were observed per isolate. Considering clinical and environmental isolates, sexual reproduction seems to occur more frequently than previously admitted in A. fumigatus. In this study, a practical SNP approach is proposed for detection of recombination events in larger collections of A. fumigatus.

Population Structure of the Late Blight Pathogen Phytophthora infestans in a Potato Germplasm Nursery in Two Consecutive Years.

As the causal agent of late blight on potato, Phytophthora infestans is one of the most destructive plant pathogens worldwide and widely known as the Irish potato famine pathogen. Understanding the genetic structure of P. infestans populations is important both for breeding and deployment of resistant varieties and for development of disease control strategies. Here, we investigate the population genetic structure of P. infestans in a potato germplasm nursery in northwestern China. In total, 279 isolates were recovered from 63 potato varieties or lines in 2010 and 2011, and were genotyped by mitochondrial DNA haplotypes and a set of nine simple-sequence repeat markers. Selected isolates were further examined for virulence on a set of differential lines containing each resistance (R) gene (R1 to R11). The overall P. infestans population was characterized as having a low level of genetic diversity and resistance to metalaxyl, and containing a high percentage of individuals that virulent to all 11 R genes. Both A1 and A2 mating types as well as self-fertile P. infestans isolates were present but there was no evidence of sexual reproduction. The low level of genetic differentiation in P. infestans populations is probably due to the action of relatively high levels of migration as supported by analysis of molecular variance (P < 0.01). Migration and asexual reproduction were the predominant mechanisms influencing the P. infestans population structure in the germplasm nursery. Therefore, it is important to ensure the production of pathogen-free potato seed tubers to aid sustainable production of potato in northwestern China.

Is there evidence of sexual reproduction (meiosis) in Acanthamoeba?

Evolution of independently breeding species into males and females (gametes) has remained a puzzle. Given the significant advantages of sexual reproduction over asexual reproduction as a long-term species survival strategy; here, we pose the question whether there is some form of meiosis in Acanthamoeba species, which represents our ancient lineage. The recently available Acanthamoeba genome revealed several genes implicated in meiosis in sexual eukaryotes such as Spo11, Mre11, Rad50, Rad51, Rad52, Mnd1, Dmc1, Msh, and Mlh, suggesting that Acanthamoeba is capable of some form of meiosis, inferring the presence of sexual reproduction in Acanthamoeba, and that meiosis evolved early in eukaryotic evolution.

Direct evidence of sexual reproduction in the zebra coral, Oulastrea crispata (Anthozoa, Scleractinia), in Japan

Reproductive traits of scleractinian corals are important in understanding their ecology and for maintaining coral populations; however, it has been reported for no more than 30% of species. Oulastrea crispata (Lamark, 1816) has the greatest north-south distribution in the Indo-West Pacific. This species is also known as one of the most stress-tolerant corals. Thus, most previous studies on O. crispata have examined its physiological, ecological, morphological, or genetic traits and its symbiotic dinoflagellates relative to its broad distribution and its stress tolerance. However, there have been few studies on its reproduction. In this study, the release of sperm and eggs of O. crispata was observed under laboratory rearing conditions in Shirahama, Kii Peninsula, Japan. This is the first direct evidence of sexual reproduction in this species, and the contribution of sexual reproduction to Oulastrea biology is briefly discussed.

Population Structure of Geosmithia morbida, the Causal Agent of Thousand Cankers Disease of Walnut Trees in the United States

The ascomycete Geosmithia morbida and the walnut twig beetle Pityophthorus juglandis are associated with thousand cankers disease of Juglans (walnut) and Pterocarya (wingnut). The disease was first reported in the western United States (USA) on several Juglans species, but has been found more recently in the eastern USA in the native range of the highly susceptible Juglans nigra. We performed a comprehensive population genetic study of 209 G. morbida isolates collected from Juglans and Pterocarya from 17 geographic regions distributed across 12 U.S. states. The study was based on sequence typing of 27 single nucleotide polymorphisms from three genomic regions and genotyping with ten microsatellite primer pairs. Using multilocus sequence-typing data, 197 G. morbida isolates were placed into one of 57 haplotypes. In some instances, multiple haplotypes were recovered from isolates collected on the same tree. Twenty-four of the haplotypes (42%) were recovered from more than one isolate; the two most frequently occurring haplotypes (H02 and H03) represented 36% of all isolates. These two haplotypes were abundant in California, but were not recovered from Arizona or New Mexico. G. morbida population structure was best explained by four genetically distinct groups that clustered into three geographic regions. Most of the haplotypes isolated from the native range of J. major (Arizona and New Mexico) were found in those states only or present in distinct genetic clusters. There was no evidence of sexual reproduction or genetic recombination in any population. The scattered distribution of the genetic clusters indicated that G. morbida was likely disseminated to different regions at several times and from several sources. The large number of haplotypes observed and the genetic complexity of G. morbida indicate that it evolved in association with at least one Juglans spp. and the walnut twig beetle long before the first reports of the disease.