Evidence For Natural Hybridization Research Articles

Molecular evidence for natural hybridization between Rumex crispus and R. obtusifolius (Polygonaceae) in Korea

Interspecific hybridization has been suggested to occur frequently in Rumex (Polygonaceae). Several hypothesized combinations of parental species of hybrids based on their intermediate morphology have been suggested in the genus, but few of them have been phylogenetically tested. We analyzed nuclear and chloroplast DNA sequence data of a putative natural hybrid between Rumex crispus and Rumex obtusifolius from Korea to confirm its hybrid status and to determine the maternal parent. Analysis of the nuclear DNA pgiC region revealed that R. crispus and R. obtusifolius have contributed to the nuclear genome of the putative hybrids. The haplotype distribution pattern inferred from the combined sequence data set of five chloroplast DNA regions (matK, rbcL-accD IGS, trnK-rps16 IGS, ycf6-psbM IGS and psbA-trnH IGS) indicated bidirectional hybridization events between R. crispus and R. obtusifolius. This paper provides the first molecular evidence for interspecific hybridization between R. crispus and R. obtusifolius. In addition, our findings strongly suggested that Korean populations of Rumex japonicus have a hybrid origin, and R. crispus may represent one of the parental taxa.

Evidence for natural hybridization and novel Wolbachia strain superinfections in the Anopheles gambiae complex from Guinea.

Wolbachia, a widespread bacterium which can influence mosquito-borne pathogen transmission, has recently been detected within Anopheles (An.) species that are malaria vectors in Sub-Saharan Africa. Although studies have reported Wolbachia strains in the An. gambiae complex, apparent low density and prevalence rates require confirmation. In this study, wild Anopheles mosquitoes collected from two regions of Guinea were investigated. In contrast with previous studies, RNA was extracted from adult females (n = 516) to increase the chances for the detection of actively expressed Wolbachia genes, determine Wolbachia prevalence rates and estimate relative strain densities. Molecular confirmation of mosquito species and Wolbachia multilocus sequence typing (MLST) were carried out to analyse phylogenetic relationships of mosquito hosts and newly discovered Wolbachia strains. Strains were detected in An. melas (prevalence rate of 11.6%–16/138) and hybrids between An. melas and An. gambiae sensu stricto (prevalence rate of 40.0%–6/15) from Senguelen in the Maferinyah region. Furthermore, a novel high-density strain, termed wAnsX, was found in an unclassified Anopheles species. The discovery of novel Wolbachia strains (particularly in members, and hybrids, of the An. gambiae complex) provides further candidate strains that could be used for future Wolbachia-based malaria biocontrol strategies.

Природные и культивируемые тополя Иркутской области и Бурятии

The study aimed at supposed area contact zone of Populus laurifolia and P. suaveolens. We looked for evidence of natural hybridization of the two species, along with the description of local ornamental cultivars which may be involved in these hybridizations, too. Species, cultivars and hybrids we identified by morphological characters traditionally used in poplar taxonomy. We found out that P. laurifolia did not grow in the studied area. Instead, we revealed a westward clinal variability of P. suaveolens characters towards P. laurifolia. Hybrids of three Siberian poplars, P. laurifolia, P. suaveolens and P. nigra dominate among cultivars. We found no evidence of numerous hybridization events between these cultivars and natural species in the area studied.

Molecular Evidence for Natural Hybridization between Cotoneaster dielsianus and C. glaucophyllus

Hybridization accompanied by polyploidization and apomixis has been demonstrated as a driving force in the evolution and speciation of many plants. A good example to study the evolutionary process of hybridization associated with polyploidy and apomixis is the genus Cotoneaster (Rosaceae), which includes approximately 150 species, most of which are polyploid apomicts. In this study, we investigated all Cotoneaster taxa distributed in a small region of Malipo, Yunnan, China. Based on the morphological characteristics, four Cotoneaster taxa were identified and sampled: C. dielsianus, C. glaucophyllus, C. franchetii, and a putative hybrid. Flow cytometry analyses showed that C. glaucophyllus was diploid, while the other three taxa were tetraploid. A total of five low-copy nuclear genes and six chloroplast regions were sequenced to validate the status of the putative hybrid. Sequence analyses showed that C. dielsianus and C. glaucophyllus are distantly related and they could be well separated using totally 50 fixed nucleotide substitutions and four fixed indels at the 11 investigated genes. All individuals of the putative hybrid harbored identical sequences: they showed chromatogram additivity for all fixed differences between C. dielsianus and C. glaucophyllus at the five nuclear genes, and were identical with C. glaucophyllus at the six chloroplast regions. Haplotype analysis revealed that C. dielsianus possessed nine haplotypes for the 11 genes, while C. glaucophyllus had ten, and there were no shared haplotypes between the two species. The putative hybrid harbored two haplotypes for each nuclear gene: one shared with C. dielsianus and the other with C. glaucophyllus. They possessed the same chloroplast haplotype with C. glaucophyllus. Our study provided convincing evidence for natural hybridization between C. dielsianus and C. glaucophyllus, and revealed that all hybrid individuals were derivatives of one initial F1 via apomixes. C. glaucophyllus served as the maternal parent at the initial hybridization event. We proposed that anthropological disturbance provided an opportunity for hybridization between C. dielsianus and C. glaucophyllus, and a tetraploid F1 successfully bred many identical progenies via apomixis. Under this situation, species integrity could be maintained for these Cotoneaster species, but attentions should be kept for this new-born hybrid.

Molecular and Cytological Studies of an Interspecific Hybrid in Schoenoplectus (Cyperaceae)

ITS sequence and chromosome data were used as evidence of natural hybridization in plants of Schoenoplectus (Cyperaceae) from Yawata moor, Hiroshima Prefecture, Japan. The hybrids were intermediate mo

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae.

The natural biology of Saccharomyces cerevisiae, the best known unicellular model eukaryote, remains poorly documented and understood although recent progress has started to change this situation. Studies carried out recently in the Northern Hemisphere revealed the existence of wild populations associated with oak trees in North America, Asia, and in the Mediterranean region. However, in spite of these advances, the global distribution of natural populations of S. cerevisiae, especially in regions were oaks and other members of the Fagaceae are absent, is not well understood. Here we investigate the occurrence of S. cerevisiae in Brazil, a tropical region where oaks and other Fagaceae are absent. We report a candidate natural habitat of S. cerevisiae in South America and, using whole-genome data, we uncover new lineages that appear to have as closest relatives the wild populations found in North America and Japan. A population structure analysis revealed the penetration of the wine genotype into the wild Brazilian population, a first observation of the impact of domesticated microbe lineages on the genetic structure of wild populations. Unexpectedly, the Brazilian population shows conspicuous evidence of hybridization with an American population of Saccharomyces paradoxus. Introgressions from S. paradoxus were significantly enriched in genes encoding secondary active transmembrane transporters. We hypothesize that hybridization in tropical wild lineages may have facilitated the habitat transition accompanying the colonization of the tropical ecosystem.

Phylogenetic relationships and natural hybridization in Triadica inferred from nuclear and chloroplast DNA analyses

Triadica (Euphorbiaceae) is a small genus endemic to East Asia and Southeast Asia, consisting of three species differentially adapted to heterogeneous habitats. To date, the phylogenetic relationships of this genus have not been resolved, and there has been no evidence for interspecific hybridization in Triadica. In this study, we sequenced the nrITS regions, two nuclear genes and a chloroplast gene to reconstruct the molecular phylogeny of Triadica and to test the hypothesis of natural hybridization between Triadica sebifera and Triadica cochinchinensis, and between T. sebifera and Tridica rotundifolia. Phylogenetic analysis showed that T. sebifera diverged first within this genus, and T. cochinchinensis and T. rotundifolia were sister species. Both of the two putative hybrids show chromatogram additivity at each of the two nuclear genes, providing convincing evidence for natural hybridization between T. sebifera and T. cochinchinensis, and between T. sebifera and T. rotundifolia. The chloroplast gene sequences of both hybrids were identical with that of T. sebifera, suggesting that T. sebifera was the maternal parent of the two hybrids. This is the first report of natural hybridization in Triadica, and the hybrids identified in this study should be a good starting point for further hybridization-based breeding in T. sebifera.

Molecular Characterization of Natural Hybrids Formed between Five Related Indigenous Clade 6 Phytophthora Species.

Most Phytophthora hybrids characterized to date have emerged from nurseries and managed landscapes, most likely generated as a consequence of biological invasions associated with the movement of living plants and germplasm for ornamental, horticultural and agricultural purposes. Presented here is evidence for natural hybridization among a group of five closely related indigenous clade 6 Phytophthora species isolated from waterways and riparian ecosystems in Western Australia. Molecular characterization of hybrids consisted of cloning and sequencing two nuclear genes (ITS and ASF), sequencing of two further nuclear loci (BT and HSP) and of two mitochondrial loci (COI and NADH). Additionally, phenotypic traits including morphology of sporangia and optima and maxima temperatures for growth were also determined. In most cases the nuclear genes were biparentally and in all cases the mtDNA were uniparentally inherited, indicating hybrid formation through sexual crosses. Some isolates bear the molecular signature of three parents suggesting additional hybrid events, although it cannot be determined from the data if these were sequential or simultaneous. These species and their hybrids co-exist in riparian ecosystems and waterways where their ability for rapid asexual proliferation would enable them to rapidly colonize green plant litter. The apparent ease of hybridization could eventually lead to the merging of species through introgression. However, at this point in time, species integrity has been maintained and a more likely scenario is that the hybrids are not stable evolutionary lineages, but rather transient hybrid clones.

Evidence for natural hybridization between native and introduced lineages of Phragmites australis in the Chesapeake Bay watershed.

The introduction of nonnative taxa into areas occupied by conspecifics can lead to local extinction of native taxa via habitat modification and competitive dominance, and be exacerbated by outbreeding depression or the formation of invasive hybrid lineages following intraspecific gene flow. The expansion of Eurasian Phragmites australis into tidal wetlands of North America has been accompanied by a dramatic decline of native P. australis, with few relic populations remaining along the Atlantic coastline of the United States, particularly in the Virginia portion of the Chesapeake Bay. We sampled populations from the York River and its two major tributaries to determine the pattern of Phragmites invasion and identify remnant native populations that warrant conservation. We used chloroplast DNA haplotypes and nuclear DNA microsatellite profiles to classify individuals as belonging to the native or introduced lineage. Although native Phragmites stands were identified in the brackish upstream reaches of the two York River tributaries, the majority of Phragmites stands surveyed contained the introduced lineage. We also identified a single putative hybrid plant, based on its microsatellite profile. This plant possessed the native cpDNA haplotype and was located in an otherwise native Phragmites stand that is adjacent to an isolated patch of introduced Phragmites. Although evidence of field hybridization between native and introduced lineages of Phragmites in North America is still relatively rare, the continued encroachment of the introduced lineage into native wetlands may increase the likelihood of future hybrid formation. Careful genetic monitoring to identify remnant native and potential hybrid Phragmites is essential for prioritizing ongoing management efforts.

Molecular Markers and Conservation of Plant Species in the Latin-America: The Case of Phaedranassa viridiflora (Amaryllidaceae)

Phaedranassa viridiflora (Amaryllidaceae) is an endemic and endangered plant restricted to the Northern Andes in Ecuador. It is known in three locations where it is sympatric with other Phaedranassa species. Phaedranassa viridiflora is the only species of the genus with yellow flowers. We analyzed 13 microsatellite loci to elucidate the genetic structure of the populations of P. viridiflora. Our results provided the first evidence of natural hybridization in the genus (between P. viridiflora and P. dubia in the Pululahua crater of northern Ecuador). The central and southern populations did not show hybridization. Genetic diversity was the highest in the Pululahua population. Central and southern populations have a higher proportion of clones than Pululahua. Bayesian and cluster analysis suggest that the yellow flower type evolved at least three times along the Ecuadorean Andes. In contrast to other Phaedranassa species, Phaedranassa viridiflora shows lower genetic diversity, which is likely related to a vegetative reproductive strategy.

Natural hybridization and potential seed set of sympatric Populus nigra and Populus × canadensis along the river IJzer in Flanders (Belgium)

Background In Europe, Populus nigra generally grows sympatric with the exotic related taxon Populus x canadensis. Natural hybridization followed by introgression and genetic swamping is often mentioned as a potential threat for the conservation of P. nigra. However, as evidence for natural hybridization with P. x canadensis is scarce, the significance of this threat is unclear. Methods After first determining the genotypic diversity within 209 trees of P. nigra collected in western Flanders (northwest Belgium), we assessed natural hybridization events between P. nigra females and P. x canadensis males with diagnostic microsatellite markers. We also studied the possible paternity of the frequently planted P. nigra cv. Italica. Furthermore, we compared the potential seed set of P. x canadensis and P. nigra by counting the number of unfertilized ovules per ovary and the number of ovaries per pistillate inflorescences. Results and conclusions Only two different multilocus microsatellite genotypes were detected within the 209 black poplar trees sampled in western Flanders. In 57 % of the seedlings from the open pollinated black poplar trees, at least one species-specific allele of P. deltoides was detected. P. nigra cv. Italica could not be excluded as a father of one seedling. The potential for seed set and the number of ovules per ovary was significantly higher for P. x canadensis compared to P. nigra. Conclusions The extreme low number of P. nigra genotypes in western Flanders suggests a strong human influence on the species’ genetic diversity. The findings further indicate that natural hybridization events between female P. nigra and male P. x canadensis frequently occur in our study area. Furthermore, P. x canadensis has a higher seed set potential compared to P. nigra. Restoration projects of P. nigra in the valley of the IJzer river should initially aim reforestation measures with a mixture of different black poplar genotypes from neighbouring regions.

Molecular phylogeny and evidence for natural hybridization and historical introgression between Ceriops species (Rhizophoraceae)

Ceriops (Rhizophoraceae) is a genus comprised of five species of mangroves distributed in tropical and subtropical coastal regions. In this study, sequences from nuclear ribosomal ITS and the plastid trnL intron are used to construct molecular phylogenies of this genus revealing two species complexes, the C. tagal complex (C. tagal and C. australis), and the C. decandra complex (C. decandra, C. pseudodecandra and C. zippeliana), each forming a distinct clade. All five species, including the newly designated species C. pseudodecandra, are well supported. However, natural hybridization and historical introgression between Ceriops species are also demonstrated. The ITS sequences of Ceriops species, in contrast to their plastid trnL intron sequences, show a great amount of homoplasy during evolution. Historical introgression originating from natural hybridization was demonstrated based on the additivity of ITS sequences from putative parents. Of the five Ceriops species, C. pseu- dodecandra is a relatively isolated species. C. decandra and C. zippeliana show mutual introgression in most populations. According to both the nuclear ITS sequences and the plastid trnL intron, an intermediate form from Darwin is likelya natural hybrid, with C. tagal and C. australis respectively the maternal and paternal parents.

Evidence of natural hybridization among homothallic members of the basidiomycete Armillaria mellea sensu stricto

Populations of Armillaria mellea (Basidiomycota, Agaricales) across much of its range are heterothallic; homothallic populations occur only in Africa (A. mellea ssp. africana), China (China Biological Species CBS G), and Japan (A. mellea ssp. nipponica). Monosporous isolates of heterothallic A. mellea are haploid and their mating behaviour is consistent with the requirement of two different alleles at two mating-type loci (tetrapolar mating system) to create a diploid individual. In contrast, monosporous isolates of homothallic A. mellea are putatively diploid; they bypass the haploid phase by undergoing karyogamy in the basidium (a unique type of secondary homothallism/pseudohomothallism). In order to determine the genetic origin of this homothallism, we analyzed genetic variation of 47 heterothallic isolates from China, Europe, and North America, and 14 homothallic isolates from Africa, China, and Japan. Gene trees and mutational networks were constructed for partial mitochondrial gene ATP synthase subunit 6 (ATP6) and for the following nuclear genes: actin (ACTIN), elongation factor subunit 1-alpha (EFA), glyceraldehyde 3-phosphate dehydrogenase (GPD), and the RNA polymerase subunit II (RPB2). Homothallic isolates from Africa and Japan shared a common mitochondrial ATP6 haplotype with homothallic isolates from China, and are likely introductions. Homothallic isolates from China that shared a common mitochondrial haplotype with all European isolates did not share European nuclear haplotypes, as revealed by median-joining networks, but instead clustered with haplotypes from China or were intermediate between those of China and Europe. Such mitochondrial–nuclear discordance in homothallic isolates from China is indicative of hybridization between lineages originating from China and Europe.

Advertisement and release calls in Neotropical toads of the Rhinella granulosa group and evidence of natural hybridization between R. bergi and R. major (Anura: Bufonidae)

The Rhinella granulosa group currently includes 12 species distributed eastern to the Andes, from Panama to central Argentina. We studied bioacoustic features of the advertisement calls in seven of these species: Rhinella azarai, R. bergi, R. centralis, R. dorbignyi, R. fernandezae, R. major, and R. merianae. In addition, we analyzed the release calls of R. azarai, R. bergi, R. dorbignyi, and R. fernandezae. The advertisement calls consisted of long trills, composed by notes with a variable pulse number (2–8) that was characteristic of each species. The release calls consisted of a single note, pulsed or not. Both advertisement and release calls clearly varied between species, except for R. dorbignyi and R. fernandezae. The study of specimens sharing exosomatic characters with R. bergi and R. major from a syntopy area, which presented intermediate spectral and temporal call parameters, confirmed natural hybridization between these two species.

Molecular data provide strong evidence of natural hybridization between native and introduced lineages of Phragmites australis in North America

Hybridization, both within and between taxa, can be an important evolutionary stimulus for bioinvasions. Novel intra-taxon hybridizations may arise either between formerly allopatric introduced lineages, or between native and introduced lineages. The latter can occur following a cryptic invasion of a non-native lineage, such as the nineteenth century introduction to North America of a European lineage of the common reed Phragmites australis. Previous studies found no evidence of natural hybridization between native and introduced lineages of P. australis, but produced some F1 hybrids under experimental conditions when the seed parent was native and the pollen parent was introduced. In this study we used microsatellite data to compare genotypes of P. australis along a transect of approximately 2,000 km in eastern North America. Although hybridization appears uncommon, simulations and principle component analysis of genetic data provided strong evidence for natural hybridization at two sites adjacent to Lake Erie in which native and introduced lineages were sympatric. The seed parent was the native lineage in some cases, and the introduced lineage in other cases. There is now the potential for P. australis hybrids to become increasingly invasive, and managers should consider as a priority the removal of introduced stands from sites where they co-exist with native stands.

Genome elimination during microsporogenesis in two pentaploid accessions of Brachiaria decumbens (Poaceae)

Polyploidy is a prominent and significant force in plant evolution, taking place since ancient times and continuing until today. Recent cytogenetic studies in the genus Brachiaria using germplasm collected from wild African savannas in the 1980s revealed that most species and accessions within species are polyploid. Diploid, tetraploid, and pentaploid accessions have been found. We found asynchronous meiosis during microsporogenesis, followed by genome elimination, in two pentaploid (2n = 5x = 45) accessions (D53 and D71) of a hardy, invasive pasture grass, introduced from Africa to Brazil, Brachiaria decumbens. In these accessions, chromosomes paired as 18 bivalents and nine univalents during diakinesis, suggesting that these accessions resulted from a recent event of natural hybridization. The lack of chromosome associations in the genomes suggests that these accessions resulted from hybridization between two genotypes that are not closely related, with low genome affinity and with different meiotic rhythms. This supposition is reinforced by the meiotic behavior of the nine univalents, which were always laggard in relation to the other chromosomes and eliminated as micronuclei in microspores. The behavior of these accessions, which have an odd level of ploidy and confirmed genome elimination, supports the general assumption that a polyploid accession can undergo a new event of polyploidization by natural hybridization (neopolyploidyzation). This evidence for natural hybridization in Brachiaria shows that this is a wild genus in an ongoing evolutionary process.

Is the endangered Grevy's zebra threatened by hybridization?

AbstractHybridization between an abundant species and an endangered species is cause for concern. When such hybridization is observed, it is both urgent and necessary to assess the level of threat posed to the endangered species. We report the first evidence of natural hybridization between two equids: the endangered Grevy's zebra Equus grevyi and the abundant plains zebra Equus burchelli. Grevy's zebra now number <3000 individuals globally, and occur only in northern Kenya and Ethiopia. In recent years, Grevy's zebra have become increasingly concentrated in the south of their range due to habitat loss in the north. Both species are sympatric in the Laikipia ecosystem of northern Kenya, where we have observed purportedly hybrid individuals. Using mitochondrial and Y chromosome DNA, we confirmed the hybrid status of the morphologically identified hybrids and demonstrate conclusively that all first‐generation hybrids are the offspring of plains zebra females and Grevy's zebra males. Behaviorally, hybrids integrate themselves into plains zebra society, rather than adopting the social organization of Grevy's zebra. Two hybrids have successfully raised foals to over 3 months in age, including one which has reached adulthood, indicating the fertility of female hybrids and viability of their offspring. We hypothesize that hybridization occurs due to (1) skewed sex ratios, in favor of males, within Grevy's zebra and (2) the numerical dominance of plains zebra in the region where hybridization is occurring. Stakeholders have discussed hybridization as a potential threat to Grevy's zebra survival. We argue, however, based on behavioral observations, that hybridization is unlikely to dilute the Grevy's zebra gene pool in the short term. As a conservation concern, hybridization is secondary to more direct causes of Grevy's zebra declines.

Evidence of natural hybridization on Portuguese Digitalis thapsi L.: morphological and chemical characterization

In Flora Europaea [1] two species are described for Portugal, namely Digitalis thapsi L. and D. purpurea L. Until now, and in spite of their economic importance, little information is available concerning the chemical composition of the Portuguese populations of D. purpurea and only some old studies are available on the identification of both purpurea glycosides and lanatosides of D. thapsi [2] and on lipophilic flavonoids [3].

Molecular evidence for natural hybridization between Sonneratia alba and S. griffithii

Interspecific hybridization has been frequently observed in the mangrove genus Sonneratia. However, no natural hybridization has been reported between Sonneratia alba and S. griffithii to date, despite their overlap- ping distribution in the coast of Andaman Sea. In this study, cysteine proteinase inhibitor gene (cpi) from the nuclear genome, and two intergenic spacers (trnL-trnF and trnV-trnM) from the chloroplast genome, were se- quenced to determine whether natural hybridization took place between the two species. Our results revealed two distinct types of cpi sequences from the putative hybrid matching those acquired from S. griffithii and S. alba, respectively. Sequencing of the chloroplast trnL-trnF and trnV-trnM regions showed that S. alba differed from S. griffithii by one nucleotide in each region, and the putative hybrid had the identical sequences with S. griffithii. Molecular data demonstrated clearly that there indeed existed natural hybridization between S. alba and S. grif- fithii, and that S. griffithii was the maternal parent in this hybridization event.

Evidence of natural hybridization betweenAegilops geniculataand wheat under field conditions in Central Spain

This study deals with hybrids between Aegilops geniculata and bread wheat, Triticum aestivum L., detected in two Ae. geniculata populations in the "Meseta Central", Spain's central plateau where wheat is a major crop. Morphological traits and pentaploid chromosome numbers were used to identify hybrids in 2004 and 2005. The frequency of hybridization under natural conditions was calculated for one of these populations. Six hybrids were detected from a sample of 3158 seeds from this population. The hybrids were mainly sterile but seed set can be found. This study extends the range of documented hybridization to include central Spain. The potential risks associated with natural hybridization in the context of transgenic wheat cultivation are discussed.