Event Abstract Back to Event Whole-genome sequencing of an extinct whitefish species reveals extensive introgression after speciation reversal David F. Frei1, 2*, Ole Seehausen1, 2 and Philine G. Feulner1, 2 1 Swiss Federal Institute of Aquatic Science and Technology, Switzerland 2 University of Bern, Switzerland A large proportion of contemporary biodiversity evolved through ecological speciation, which is the evolution of reproductive isolation as a consequence of adaptation to divergent selection between niches. If species evolved in response to divergent ecological selection, a change in the balance between gene flow and selection can erode reproductive isolation and lead to speciation reversal. Although a major part of the world’s species diversity is sensitive to hybridization-driven biodiversity dynamics, the concept of speciation reversal has received little attention. In Switzerland, cultural eutrophication of pre-alpine lakes caused a substantial loss of endemic whitefish diversity by a combination of speciation reversal and demographic decline. We made use of a collection of historical whitefish scales as source of DNA to sequence whole-genomes of the pre-eutrophication populations of endemic Lake Constance whitefish species, including the profundal Coregonus gutturosus that went extinct during eutrophication. We found significant introgression of the extinct species into three contemporary species that happened during the eutrophic phase, demonstrating the involvement of speciation reversal in the extinction process of C. gutturosus. We identified introgressed regions and show the genomic landscape of introgression after speciation reversal in genomes of extant whitefish species. In total, we detected a proportion of 11% of the genome of C. gutturosus distributed across six genomes of contemporary species, suggesting that introgression rescued considerable amounts of genetic variation of the extinct species from being lost. Currently, we are investigating whether this variation contains genes that may play a role in future adaptation to profundal habitats that currently have no whitefish anymore, although they can be occupied again due to recent re-oligotrophication. As a large fraction of contemporary biodiversity evolved through ecological speciation, the potential for speciation reversal when environments change is widespread. Our results highlight the importance of the conservation of ecological and evolutionary mechanisms maintaining species diversity and advance our understanding of speciation reversal as one evolutionary trajectory that lineages can follow through time. Acknowledgements We thank Eawag and the interreg project "SeeWandel: Leben im Bodensee – gestern, heute und morgen" for financial support. Thanks to the genetic diversity center (GDC) of ETH Zurich, Eawag and the University of Bern for providing the infrastructure and support to analyze our data. Keywords: ecological speciation, speciation reversal, Alpine whitefish, Introgression, Eutrophication Conference: XVI European Congress of Ichthyology, Lausanne, Switzerland, 2 Sep - 6 Sep, 2019. Presentation Type: Oral Topic: EVOLUTIONARY GENOMICS OF FISHES Citation: Frei DF, Seehausen O and Feulner PG (2019). Whole-genome sequencing of an extinct whitefish species reveals extensive introgression after speciation reversal. Front. Mar. Sci. Conference Abstract: XVI European Congress of Ichthyology. doi: 10.3389/conf.fmars.2019.07.00041 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 20 May 2019; Published Online: 14 Aug 2019. * Correspondence: Mr. David F Frei, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland, david.frei@eawag.ch Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. 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