Viruses are implicated as important biogeochemical mediators and ecological drivers in freshwater ecosystems. However, the dynamics of viruses and host associations over the seasons and blooming periods in eutrophic freshwater ecosystems remain elusive. From the water microbiomes of planktonic biomass from Lake Taihu, a large and eutrophic lake that suffered from yearly Microcystis-dominated harmful algal blooms (HABs) in China, we recovered 41,997 unique viral clusters spanning a wide taxonomic range, including 15,139 Caudovirales clusters targeting bacteria and 1,044 NCLDV clusters targeting eukaryotes. The viral community exhibited distinct seasonal succession driven by microbial communities (mainly Cyanobacteria and Planctomycetes) and environmental factors (mainly nutrients and temperature). Host prediction highlighted a more distinct viral impact on bacteria-driven nitrogen pathways than phosphate cycling through infection. HAB-induced microbial and environmental variations affected viral strategies including lifestyles, host range, and virus-encoded auxiliary metabolic genes (vAMGs) distributions. Viruses infecting Proteobacteria and Actinobacteria showed enhanced lysogenic lifestyle and condensed host ranges during HAB peak in summer, while viruses infecting Bacteroidota selected the opposite strategy. Notably, vAMGs were most abundant before HAB outbreak in spring, compensating for host bacterial metabolism including carbohydrates metabolism, photosynthesis, and phosphate regulation. The elucidated relationship between viruses, host microbes, and bloom-associated environment suggested prominent biochemical roles in the eutrophic freshwater ecosystems.
Read full abstract