Eurasian Grapevine Research Articles

Advancing Grapevine Variety Identification: A Systematic Review of Deep Learning and Machine Learning Approaches

The Eurasian grapevine (Vitis vinifera L.) is one of the most extensively cultivated horticultural crop worldwide, with significant economic relevance, particularly in wine production. Accurate grapevine variety identification is essential for ensuring product authenticity, quality control, and regulatory compliance. Traditional identification methods have inherent limitations limitations; ampelography is subjective and dependent on skilled experts, while molecular analysis is costly and time-consuming. To address these challenges, recent research has focused on applying deep learning (DL) and machine learning (ML) techniques for grapevine variety identification. This study systematically analyses 37 recent studies that employed DL and ML models for this purpose. The objective is to provide a detailed analysis of classification pipelines, highlighting the strengths and limitations of each approach. Most studies use DL models trained on leaf images captured in controlled environments at distances of up to 1.2 m. However, these studies often fail to address practical challenges, such as the inclusion of a broader range of grapevine varieties, using data directly acquired in the vineyards, and the evaluation of models under adverse conditions. This review also suggests potential directions for advancing research in this field.

Wildly growing Eurasian grapevine (Vitis vinifera L.) in Georgia: composition, research and efforts for the preservation

Wildly growing Eurasian grapevine (<i>Vitis vinifera</i> L.) in Georgia: composition, research and efforts for the preservation

A tale of three vines: current and future threats to wild Eurasian grapevine by vineyards and invasive rootstocks

AbstractAimEurasian grapevine (Vitis vinifera), one of the most important fruit crops worldwide, diverged from its wild and currently endangered relative (V. vinifera ssp. sylvestris) about 11,000 years ago. In the 19th century, detrimental phylloxera and disease outbreaks in Europe forced grapevine cultivation to use American Vitis species as rootstocks, which have now become naturalized in Europe and are starting to colonize similar habitats to the wild grapevine. Accordingly, wild grapevine now faces two additional threats: the expansion of vineyards and invasive rootstocks. Furthermore, climate change is expected to have significant impacts on the distribution of all grapevines in Europe. In this study, we quantified the distributional and bioclimatic overlap between grapewine's wild relative and the taxa associated with viticulture, under current and future climate.LocationEurope, North America.MethodsThe distributions of wild Eurasian grapevine, cultivated Eurasian grapevine and five American grapevine species used in rootstock breeding programs were linked to climate variables to model their bioclimatic niches. These ecological niche models were used to quantify the spatial and bioclimatic overlap between these seven Vitis taxa in Europe.ResultsNiche and spatial overlap is high between the wild, cultivated and rootstock grapevines, suggesting that existing conflicts between vineyards and wild grapevine conservation may be further complicated by naturalized rootstocks outcompeting the wild grapevine, especially under future scenarios of climate change. In the hottest scenario, only 76.1% of the current distribution of the Eurasian grapevine remains in suitable area.Main ConclusionsAs wild grapevine may ultimately provide a valuable gene pool for adapting viticulture to a changing world, these findings demonstrate the need for improved management of the wild grapevine and its natural habitat, to counteract the harmful effects of global change on the wild relatives of viticulture.

Presence of symptoms caused by parasitic species described in grapevine herbaria from Georgia, Spain and the United Kingdom

The present paper focuses on the presence of symptoms caused by parasitic species in samples of Eurasian grapevine (Vitis vinifera L.) belonging to different herbaria from , and the . In the Spanish case herbaria were collected by Clemente at the beginning of the 19th century and preserved at the Royal Botanical Garden of Madrid. This material was used as the basis for the publication in 1807 of the famous book “Ensayo sobre las variedades de la vid común que vegetan en Andalucía” (Essay on the varieties of common grapevine that vegetate in ). The Georgian herbaria originated from three institutions: National Museum of Georgia, National Herbarium of Georgia and . The time period of the Georgian herbaria dates from mid-19th century. The herbaria came from Kew Royal Botanical Gardens and contain samples dated as of 1843. According to observations, in the Spanish herbarium, 98 samples out of 185 show erinea, symptoms caused by Colomerus vitis (Pagenstecher) (Acari, Eryophiidae), from a total of 185 samples there. Meanwhile in other herbaria its presence was detected in 3 samples, which also showed spots caused by powdery mildew, Erysiphe necator (Schweinitz). Symptoms caused by downy mildew, Plasmopara viticola Berl. &amp; De Toni, were only detected in one sample collected in . Results attest the frequent presence of this monophagous mite pest on Southern Spanish cultivars and wild exemplars for more than two centuries.

Advanced Forecasting Modeling to Early Predict Powdery Mildew First Appearance in Different Vines Cultivars

Eurasian grapevine is a widely cultivated horticultural plant worldwide, but it is more susceptible to powdery mildew. In recent years, the high cost and negative environmental impact of calendar-applied sulfur fungicides are leading research to find alternative remedies. In this study, the early prediction (three days) of the first appearance of powdery mildew infection, on two different Italian grapevine cultivars, was detected through a partial least squares discriminant analysis (PLSDA). The treatment indications of the “PLSDA” models (treatments according to the predictive model) were compared with those of the “Standard” (treatments according to the established agricultural practice of the area). This allowed the early containment of the disease, preventing its subsequent propagation. The model was built based on weather-climate data and phytopathological information collected on the “Untreated” control cultivar to monitor the natural spread of the disease (three years of training and two of tests). For both the cultivars and the two test years (2021 and 2022), the “PLSDA” models early predicted the first appearance of fungal disease, reducing the treatment number (about four) with respect to “Standard”. In addition, analyses of key fruit quality parameters were conducted to evaluate the effectiveness of treatment reduction.

Plasmopara viticola RxLR effector PvAvh77 triggers cell death and governs immunity responses in grapevine.

Grapevine downy mildew, caused by the oomycete Plasmopara viticola, is one of the most significant production challenges for the grape and wine industry. P. viticola injects a plethora of effectors into its host cells to disrupt immune processes, but the mechanisms by which these effectors act at the molecular level have not been well characterized. Herein, we show that a candidate P. viticola avirulence homolog (Avh) RxLR effector gene, designated PvAvh77, was strongly up-regulated during the initial stages of P. viticola infection in Vitis vinifera. Further experiments demonstrated that PvAvh77 could trigger non-specific cell death when expressed in the wild grapevine Vitis riparia and in tobacco (Nicotiana benthamiana and Nicotiana tabacum). In addition, a truncated form of PvAvh77, designated PvAvh77-M2, was more active in inducing cell death in N. benthamiana and V. riparia than full-length PvAvh77. Ectopic expression of PvAvh77 in V. vinifera 'Thompson Seedless' leaves neutralized host immunity and enhanced colonization by P. viticola, and the immune-inhibiting activity of PvAvh77 on susceptible Eurasian grapevine depended on its nuclear localization. Using a yeast signal sequence trap approach, we showed that the signal peptide of PvAvh77 is functional in yeast. Moreover, PvAvh77 with a signal peptide stimulated plant immune responses in the apoplast. Notably, application of exogenous purified PvAvh77-M2 effectively initiated defence responses in grapevine extracellularly, as evidenced by increased accumulation of salicylic acid and H2O2, and reduced infection of inoculated P. viticola. In summary, we identified a novel effector, PvAvh77, from P. viticola, which has the potential to serve as an inducer of plant immunity.

Dissecting the susceptibility/resistance mechanism of Vitis vinifera for the future control of downy mildew

The Eurasian grapevine (Vitis vinifera), a species cultivated worldwide for high-quality wine production, is extremely susceptible to the agent of downy mildew, Plasmopara viticola. Nevertheless, germplasm from Georgia (Southern Caucasus, the first grapevine domestication centre), characterized by a high genetic variability, showed resistance traits to P. viticola. The cultivar Mgaloblishvili exhibited the most promising phenotype in terms of resistance against P. viticola. Its defence response results in: i) low disease intensity; ii) low sporulation; iii) damaged mycelium; iv) production of antimicrobial compounds such as volatile organic compounds (VOCs), whose effectiveness on the pathogen was evaluated by leafdisc assays. At the transcriptomic level, its resistance mechanism is determined by the differential expression of both resistance and susceptible genes. The resistance genes are related to: i) pathogen recognition through PAMP, DAMP and effector receptors; ii) ethylene signalling pathway; iii) synthesis of antimicrobial compounds (VOCs) and fungal wall degrading enzymes; iv) development of structural barriers (cell wall reinforcement). The first putative susceptible gene was the transcription factor VviLBDIf7 gene, whose validation was carried out by dsRNA (double-stranded RNA) assay. In this work, these unique results on plant-pathogen interaction are reviewed with the aim of developing new strategies to control the disease.

Integrated Bayesian Approaches Shed Light on the Dissemination Routes of the Eurasian Grapevine Germplasm

The domestication and spreading of grapevine as well as the gene flow history had been described in many studies. We used a high-quality 7k SNP dataset of 1,038 Eurasian grape varieties with unique profiles to assess the population genetic diversity, structure, and relatedness, and to infer the most likely migration events. Comparisons of putative scenarios of gene flow throughout Europe from Caucasus helped to fit the more reliable migration routes around the Mediterranean Basin. Approximate Bayesian computation (ABC) approach made possible to provide a response to several questions so far remaining unsolved. Firstly, the assessment of genetic diversity and population structure within a well-covered dataset of ancient Italian varieties suggested the different histories between the Northern and Southern Italian grapevines. Moreover, Italian genotypes were shown to be distinguishable from all the other Eurasian populations for the first time. The entire Eurasian panel confirmed the east-to-west gene flow, highlighting the Greek role as a “bridge” between the Western and Eastern Eurasia. Portuguese germplasm showed a greater proximity to French varieties than the Spanish ones, thus being the main route for gene flow from Iberian Peninsula to Central Europe. Our findings reconciled genetic and archaeological data for one of the most cultivated and fascinating crops in the world.

Genetic structure of Italian population of the grapevine downy mildew agent, Plasmopara viticola

AbstractDowny mildew, caused by the Oomycete Plasmopara viticola, is one of the most important diseases affecting the Eurasian grapevine, Vitis vinifera. The pathogen originated in Northern America and its presence was signalled for the first time into Europe in 1878. In this study, the genetic variability and structure of Italian P. viticola population was investigated by genotyping 106 P. viticola strains belonging to 12 different regions, at 31 microsatellite markers. As a result of the high percentage of missing data, 96 strains and 19 loci were retained for the data analysis. The overall Italian population presents absence of clones, evidence of sexual and asexual reproduction and a low genetic diversity, as expected for an introduced pathogen, but a slightly higher genetic diversity than that found in other European populations, based on allelic diversity at the investigated microsatellite loci. Out of 19 loci, half shows deviation from Hardy–Weinberg equilibrium and, indeed, structure analysis indicates the presence of two separate genetic clusters, with little but significantly different distribution according to geography (west–east gradient) and climatic conditions. Overall, the analysis of the P. viticola population, 140 years after its appearance in Italy, provides indication on the pathogen adaptability. This should be taken into consideration in the future for preserving the durability of disease resistant varieties in open field. In this view, all the disease control methods available should be integrated in order to reduce the selection of pathogen strains able to overcome plant resistance.

TheRpv3-3haplotype and stilbenoid induction mediate downy mildew resistance in a grapevine interspecific population

The cultivated Eurasian grapevine (Vitis vinifera L.) is highly susceptible to downy mildew (DM) – caused by the biotrophic oomycete Plasmopara viticola (Berk. & M.A. Curtis) Berl. & De Toni – the major disease of temperate-humid climates among various pathogen threats. DM control relies mainly on the massive use of fungicides leading to environmental pollution, development of resistance and residual toxicity. The exploitation of DM-resistant wild genetic resources for the development of new resistant cultivars represents a promising alternative. Taking advantage of a segregating population derived from ‘Merzling’ (M, a mid-resistant hybrid) and ‘Teroldego’ (T, a susceptible landrace), recent studies have highlighted the importance of stilbenoids among phenolic compounds in conferring resistance to this oomycete. In order to elucidate the genetic bases of DM resistance and polyphenol biosynthesis upon P. viticola inoculation, 136 M×T F1 individuals were characterized by an integrative approach combining genetic, phenotypic and gene-expression data. An improved M×T linkage map was obtained by scoring 192 microsatellite markers. The progeny was further screened for degree of resistance and production of 42 phenolic compounds (including 18 different stilbenoids). Quantitative trait locus (QTL) mapping showed that DM resistance is associated with a specific haplotype at the Rpv3 locus – herein named Rpv3-3, derived from the French hybrid ‘Seyval’ – and identified 46 novel metabolic (m)QTLs linked to 30 polyphenol-related parameters. A list of the 76 most relevant candidate genes was generated by specifically exploring the genomic regions underlying the mQTLs associated with the stilbenoids induced by the infection. Finally, expression analysis of 13 genes in Rpv3-3+/- genotypes, displaying divergent DM resistance and stilbenoid accumulation, revealed significant candidates for the genetic control of stilbenoid biosynthesis and oligomerization. These findings emphasize that DM resistance can be mediated by the major Rpv3-3 locus and stilbenoid induction.

Palaeogenomic insights into the origins of French grapevine diversity.

The Eurasian grapevine (Vitis vinifera) has long been important for wine production as well as being a food source. Despite being clonally propagated, modern cultivars exhibit great morphological and genetic diversity, with thousands of varieties described in historic and contemporaneous records. Through historical accounts, some varieties can be traced to the Middle Ages, but the genetic relationships between ancient and modern vines remain unknown. We present target-enriched genome-wide sequencing data from 28 archaeological grape seeds dating to the Iron Age, Roman era and medieval period. When compared with domesticated and wild accessions, we found that the archaeological samples were closely related to western European cultivars used for winemaking today. We identified seeds with identical genetic signatures present at different Roman sites, as well as seeds sharing parent-offspring relationships with varieties grown today. Furthermore, we discovered that one seed dated to ~1100 CE was a genetic match to 'Savagnin Blanc', providing evidence for 900 years of uninterrupted vegetative propagation.

Distribution and Characterization of the Vitis vinifera L. subsp sylvestris in Southern Tuscany.

The Eurasian grapevine is the most widespread fruit crop in the world. Numerous studies have focused on clarifying the events of domestication and the geographical areas in which they occurred. In order to add upon information on the process of grapevine domestication, the distribution and genetic diversity of a small, wild population localized in Poggio Ghiaccio Forte, an archaeological site in Maremma (Southern Tuscany), were assessed. In a preliminary survey the wild forms of Vitis vinifera L. were identified based on morphological traits. Fourty-two accessions of Vitis vinifera ssp. sylvestris were collected near the Albegna river and its secondary conduits. As a control, four non-vinifera grapevines (Vitis berlandieri, Vitis riparia Fabre, rupestris Constantia, rupestris H. Goethe) and ten varieties of Vitis vinifera ssp. sativa characterizing the Tuscan grapevine germplasm (Sangiovese, Ciliegiolo, Aleatico, Ansonica, Canaiolo Nero, Trebbiano Toscano, Barsaglina, Malvasia Lunga, Moscato Bianco, Abrusco) were added to the wild population. All fifty-six vines were treated as one population and tested by 10 SSR-based genotyping. According to SSR analysis, the wild population seems to be characterized by a systematic reduction of observed compared to expected heterozygosity due to the tendency of inbreeding and genetic trait fixation. There are a lot of registered patents about different applications involving Vitis vinifera mostly relating to disease resistance, grapevine fitness and novel combinations of antioxidants useful in therapeutic, foodstuff and cosmetic fields.

Unique resistance traits against downy mildew from the center of origin of grapevine (Vitis vinifera)

The Eurasian grapevine (Vitis vinifera), an Old World species now cultivated worldwide for high-quality wine production, is extremely susceptible to the agent of downy mildew, Plasmopara viticola. The cultivation of resistant V. vinifera varieties would be a sustainable way to reduce the damage caused by the pathogen and the impact of disease management, which involves the economic, health and environmental costs of frequent fungicide application. We report the finding of unique downy mildew resistance traits in a winemaking cultivar from the domestication center of V. vinifera, and characterize the expression of a range of genes associated with the resistance mechanism. Based on comparative experimental inoculations, confocal microscopy and transcriptomics analyses, our study shows that V. vinifera cv. Mgaloblishvili, native to Georgia (South Caucasus), exhibits unique resistance traits against P. viticola. Its defense response, leading to a limitation of P. viticola growth and sporulation, is determined by the overexpression of genes related to pathogen recognition, the ethylene signaling pathway, synthesis of antimicrobial compounds and enzymes, and the development of structural barriers. The unique resistant traits found in Mgaloblishvili highlight the presence of a rare defense system in V. vinifera against P. viticola which promises fresh opportunities for grapevine genetic improvement.

Vitis vinifera in the Iberian Peninsula: A review

The origin of the Eurasian grapevine, Vitis vinifera L. and the different steps in the development of viticulture from the wild grapevine to the modern varietal situation in the Iberian Peninsula are reviewed here. The ancestors of Vitis vinifera subs. sylvestris, the only representative of the Vitis genus in natural Eurasian and North African ecosystems, appeared in the late Miocene. In the Iberian Peninsula, human action has significantly reduced the habitat of this species, whose oldest palaeobotanical remains go back to the late Pleistocene. The introduction of viticulture in Iberia is connected with the relationships between the indigenous population and the trading colonies founded by Phoenicians and Greeks. In this way, there is evidence of wine production and consumption, even as a ritual and prestige item, going back to the third millennium BP. Chloroplast genome studies carried out in wild and cultivated plants indicate that a secondary domestication process occurred in the Iberian Peninsula and this is reflected in the “A” chlorotype, which contrasts with the predominance of the “B” and “C” chlorotypes in wild and domesticated vines in the Transcaucasian region, where domesticated grapes at sites of the Shulaveri Culture (Georgia) are evidence of early viticulture around 8000 BP.

Sugars, organic acids, and phenolic compounds of ancient grape cultivars (Vitis vinifera L.) from Igdir province of Eastern Turkey.

BackgroundThe Eurasian grapevine (Vitis vinifera L.) is the most widely cultivated and economically important horticultural crop in the world. As a one of the origin area, Anatolia played an important role in the diversification and spread of the cultivated form V. vinifera ssp. vinifera cultivars and also the wild form V. vinifera ssp. sylvestris ecotypes. Although several biodiversity studies have been conducted with local cultivars in different regions of Anatolia, no information has been reported so far on the biochemical (organic acids, sugars, phenolic acids, vitamin C) and antioxidant diversity of local historical table V. vinifera cultivars grown in Igdir province. In this work, we studied these traits in nine local table grape cultivars viz. ‘Beyaz Kismis’ (synonym name of Sultanina or Thompson seedless), ‘Askeri’, ‘El Hakki’, ‘Kirmizi Kismis’, ‘Inek Emcegi’, ‘Hacabas’, ‘Kerim Gandi’, ‘Yazen Dayi’, and ‘Miskali’ spread in the Igdir province of Eastern part of Turkey.ResultsVariability of all studied parameters is strongly influenced by cultivars (P < 0.01). Among the cultivars investigated, ‘Miskali’ showed the highest citric acid content (0.959 g/l) while ‘Kirmizi Kismis’ produced predominant contents in tartaric acid (12.71 g/l). The highest glucose (16.47 g/100 g) and fructose (15.55 g/100 g) contents were provided with ‘Beyaz Kismis’. ‘Kirmizi Kismis’ cultivar had also the highest quercetin (0.55 mg/l), o-coumaric acid (1.90 mg/l), and caffeic acid (2.73 mg/l) content. The highest ferulic acid (0.94 mg/l), and syringic acid (2.00 mg/l) contents were observed with ‘Beyaz Kismis’ cultivar. The highest antioxidant capacity was obtained as 9.09 μmol TE g-1 from ‘Inek Emcegi’ in TEAC (Trolox equivalent Antioxidant Capacity) assay. ‘Hacabas’ cultivar had the highest vitamin C content of 35.74 mg/100 g.ConclusionsPresent results illustrated that the historical table grape cultivars grown in Igdir province of Eastern part of Turkey contained diverse and valuable sugars, organic acids, phenolic acids, Vitamin C values and demonstrated important antioxidant capacity for human health benefits. Further preservation and use of this gene pool will be helpful to avoid genetic erosion and to promote continued agriculture in the region.

Beginning of viniculture in France

Chemical analyses of ancient organic compounds absorbed into the pottery fabrics of imported Etruscan amphoras (ca. 500-475 B.C.) and into a limestone pressing platform (ca. 425-400 B.C.) at the ancient coastal port site of Lattara in southern France provide the earliest biomolecular archaeological evidence for grape wine and viniculture from this country, which is crucial to the later history of wine in Europe and the rest of the world. The data support the hypothesis that export of wine by ship from Etruria in central Italy to southern Mediterranean France fueled an ever-growing market and interest in wine there, which, in turn, as evidenced by the winepress, led to transplantation of the Eurasian grapevine and the beginning of a Celtic industry in France. Herbal and pine resin additives to the Etruscan wine point to the medicinal role of wine in antiquity, as well as a means of preserving it during marine transport.