The aim of this 2022 study was to evaluate the effect of tree growth-limiting treatments on the tree yield and quality of ‘Mutsu’ apples. The experiment was established on 7-year-old trees on M.9 rootstock in a commercial orchard in Wilga near Warsaw. Growth-limiting treatments included unilateral root pruning, spraying the trees with Regalis Plus 10 WG at various times, and spraying with Flordimex 480 SL. Eight combinations were used, with four replicates of 20 trees per repetition. The measurements included fruit set, length of this year’s shoots, yield per tree, average fruit weight, and the size structure of the yield. The distinctive physiological status of the apples was assessed directly after harvest, directly after 8 months of storage under CA conditions (1.5% CO2, 1.5% O2, 1 °C, >92% RH) and after an additional 7 days of shelf-life. Spraying trees with Regalis Plus 10 WG from the balloon stage onwards, irrespective of the treatment with root pruning, was most effective in both inhibiting long-stem growth and increasing tree yield (by almost two times) by increasing the number of apples per tree. The growth response of long-stemmed apple trees to both unilateral root pruning and Ethephon spray was significantly lower than it was to Regalis Plus 10 WG spray and had relatively little effect on their yield. Regalis Plus 10 WG resulted in a clear reduction in average fruit weight (by about 100 g), which, in the case of the large-fruited cultivar ‘Mutsu’, should be seen as an advantage. Its application from the balloon stage onwards promoted higher apple firmness at harvest and after simulated handling preceded by long-term storage.