Little is known about the Paleocene in the southern Pacific Ocean due to scarce marine records. Here, we present a systematic geochemical investigation using biomarkers, carbonate content, and carbon isotopes of a set of early Paleocene deep-sea cores from International Ocean Discovery Program Expedition 378 Site U1553. The results provide a new Paleocene biomarker profile for the Campbell Plateau, New Zealand. The occurrence and distribution of a series of hopenes, ββ hopanes, sterenes and biomarker-based maturity parameters indicate that these organically-lean sediments are in an early diagenetic stage, with an equivalent vitrinite reflectance of approximately 0.4%. Biomarker data (e.g., gammacerane index and homohopane index), carbonate carbon isotopes (−27.9 ‰ to +2.0 ‰) combined with onboard data (sulphur and methane contents) indicate that the redox properties of the Paleocene southern Pacific Ocean changed from an oxidising-anoxic transition zone to a more reducing marine environment (water depth > 1000 m). The sources of the organic matter are diverse, including algae, bacteria, diatoms, dinoflagellates, and higher plants, but are dominated by aquatic organisms. Our new biomarker record bridges a Paleocene biosphere knowledge gap in the high latitude South Pacific.