Equilibrium Dissociation Research Articles

Identifying the crucial binding domain of Histain-1 to recombinant TMEM97 in activating chemotactic migration in human corneal epithelial cells.

TMEM97, also known as the sigma-2 receptor, plays a crucial role as an endoplasmic reticular protein involved in various physiological processes such as wound healing, and cholesterol metabolism. Moreover, TMEM97 has been implicated in multiple human diseases including neurodegenerative disorders and cancers. Histatin peptides are endogenous peptides with diverse biological effects, including antimicrobial, immunomodulatory, and wound healing functions. Recent studies have revealed that histatin-1 (Hst1) acts as an endogenous ligand for TMEM97 and is essential for Hst1-induced corneal epithelial migration. In this study, we sought to establish the crucial Hst1 residues that facilitate binding to TMEM97. The purified full-length (FL)-TMEM97 expressed from Escherichia coli exhibited comparable binding affinity, as indicated by the dissociation equilibrium constant (KD) determined by Surface plasmon resonance (SPR), to commercially sourced TMEM97 expressed in mammalian cells. SPR analysis revealed that TMEM97 bound to FL-Hst1 and selected deletion mutants of Hst1. Truncation experiments pinpointed the central region of Hst1 as crucial for its binding to TMEM97, with the loss of residues 15-19 either significantly weakening or completely abolishing the binding interaction. Furthermore, alanine substitution mutant experiments highlighted residues 9-19 as critical for the interaction between TMEM97 and Hst1. Functional assays including migration and signaling were also compared for Hst1 and mutant Hst1. Collectively, these findings underscore the specific binding of Hst1 to TMEM97 and elucidate the critical regions within Hst1 necessary for this interaction which is critically important for the epithelial migration and signaling changes in the ERK and Akt pathways.

Quantifying the reversibility of ATP hydrolysis in rabbit skeletal myosin subfragment 1 using a luciferase assay

BackgroundIt is known that the adenosine triphosphate (ATP) hydrolysis in a number of ATPases is reversible. Radioactive methods are standard in measuring ATPase reversibility. We used myosin as a well-studied model enzyme to develop a luciferase-based assay to quantify the reversibility of ATP hydrolysis. In myosin, ATP bound to the active site is hydrolyzed into adenosine diphosphate (ADP) and inorganic phosphate (Pi) and recombined back into ATP multiple times before products of hydrolysis are released. The reversibility of ATP hydrolysis by skeletal myosin was previously confirmed using radioactively labeled isotopes. Transient kinetics studies indicated that the ATP hydrolysis step is temperature-sensitive, with a dissociation equilibrium constant of 1.6 at 3 °C. Consequently, the association equilibrium constant at this temperature is 0.63. The goal of our work was two-fold, (a) to develop a luciferase-based assay to measure the equilibrium constant of enzymatic ATP hydrolysis, eliminating the need for radioactively labeled Pi, and (b) refine the value of the association equilibrium constant of the myosin ATPase hydrolysis step.MethodsIn this assay, a reaction mixture containing myosin and saturating levels of ADP and Pi was incubated to reach equilibrium, then the reaction was terminated, and the amount of ATP produced by myosin was quantified using the luciferase assay. The equilibrium constant of ATP hydrolysis was defined as the ratio of ATP to ADP bound to myosin.ResultsWe obtained a value of 0.78 ± 0.14 for the association equilibrium constant of ATP hydrolysis at 0 °C. 50 μM ADP bound to myosin is turned into 21.9 ± 3.0 μM ATP. Our result is in excellent agreement with the literature data, supporting the viability of the new methodology.DiscussionThis methodology allows a more accessible and safe option to measure ATP production and reversibility of ATPase enzymes. Standard laboratory equipment is utilized in the assay, and the number of steps in the developed assay is reduced significantly compared to the radioactive method.

Physiology-based pharmacokinetic model with relative transcriptomics to evaluate tissue distribution and receptor occupancy of anifrolumab.

Type I interferons contribute to the pathogenesis of several autoimmune disorders, including systemic lupus erythematosus (SLE), systemic sclerosis, cutaneous lupus erythematosus, and myositis. Anifrolumab is a monoclonal antibody that binds to subunit 1 of the type I interferon receptor (IFNAR1). Results of phase IIb and phase III trials led to the approval of intravenous anifrolumab 300 mg every 4 weeks (Q4W) alongside standard therapy in patients with moderate-to-severe SLE. Here, we built a population physiology-based pharmacokinetic (PBPK) model of anifrolumab by utilizing the physiochemical properties of anifrolumab, binding kinetics to the Fc gamma neonatal receptor, and target-mediated drug disposition properties. A novel relative transcriptomics approach was employed to determine IFNAR1 expression in tissues (blood, skin, gastrointestinal tract, lungs, and muscle) using mRNA abundances from bioinformatic databases. The IFNAR1 expression and PBPK model were validated by testing their ability to predict clinical pharmacokinetics over a large dose range from different clinical scenarios after subcutaneous and intravenous anifrolumab dosing. The validated PBPK model predicted high unbound local concentrations of anifrolumab in blood, skin, gastrointestinal tract, lungs, and muscle, which exceeded its IFNAR1 dissociation equilibrium constant values. The model also predicted high IFNAR1 occupancy with subcutaneous and intravenous anifrolumab dosing. The model predicted more sustained IFNAR1 occupancy ≥90% with subcutaneous anifrolumab 120 mg once-weekly dosing vs. intravenous 300 mg Q4W dosing. The results informed the dosing of phase III studies of anifrolumab in new indications and present a novel approach to PBPK modeling coupled with relative transcriptomics in simulating pharmacokinetics of therapeutic monoclonal antibodies.

Microscopic study on the memory effect of methane hydrate in the presence of silica nanoparticles: Ⅱ. Residual structure hypothesis & impurity imprinting hypothesis

Based on the hydrate dissociation mechanism and guest supersaturation hypothesis studied in the first part of this series, methane hydrate reformation characteristics affected by memory effect regarding the residual structures hypothesis and impurity imprints hypothesis is further studied to clarify the microscopic mechanism of methane hydrate memory effect during combustible ice exploitation. The initial molecular dynamics simulation configurations containing hydrate residual structures and silica nanoparticles were captured from hydrate dissociation simulation. By analyzing the distribution and transportation of methane molecules, hydrate clusters, and silica nanoparticles, the macroscopically recognized three-stage process of induction-growth-equilibrium for methane hydrate reformation has been verified from microscopic insight. Besides, the orderly arrangement of methane molecules around hydrate residual structures has been found to be essential to promote the growth of hydrate clusters. Moreover, the mutual adsorption between silica nanoparticles-guest nanobubbles and the mutual aggregation between silica nanoparticles-hydrate clusters both affect hydrate reformation process. Combined with the main conclusions derived from the first part of this series, it is found that hydrate memory effect diminishes as hydrate dissociation equilibriums. Thence, the microscopic analysis indicated that the methane hydrate reformation memory effect is influenced by multiple factors, where residual structures are the basis, supersaturated guest is the driving force, and silica nanoparticles are potential threats to form aggregates plugging.

Cyanohydrin Equilibria Implicate Non-Aromatic Aldehydes in Photochemical Production of Oceanic Carbon Monoxide.

Carbonyls have previously been dismissed as significant precursors for carbon monoxide (CO) photoproduction from natural chromophoric dissolved organic matter (CDOM). Here, we used hydrogen cyanide (HCN), which reacts with carbonyls to form photochemically inert cyanohydrins, as a probe to re-examine the role of carbonyls in CO photoproduction. Adding HCN to low-absorbance euphotic zone seawater decreased CO photoproduction. Modeling [HCN] (∼5 to 364 μM) vs the percent decrease in CO photoproduction (%CO↓) yielded carbonyl-cyanohydrin dissociation equilibrium constants, KD, and maximum %CO↓, %CO↓max values. Four Atlantic and Pacific seawater KDs (66.7 ± 19.6 μM) overlap aqueous aliphatic but not aromatic aldehyde KDs. Phenylacetaldehyde (PA) and other β,γ-unsaturated aldehydes are proposed as prototypical CO precursors. Direct photolysis of ∼10 nM PA can supply the measured daily production of HCN-sensitive CO at an open-ocean site near Bermuda. HCN's %CO↓max was 31 ± 2.5% in North Atlantic seawater vs the 13 ± 2.5% inhibition of CO photoproduction by borohydride, a dilemma since only borohydride affects most ketones. Borohydride also decreased CDOM absorption much more than did HCN. This puzzle probably reflects differing steric and solvation requirements in HCN- and borohydride-CDOM reactions. This study demonstrates cyanophilic aldehydes to be a significant source of open-ocean CO and reveals new clues regarding CDOM photochemistry mechanisms.

Binding Behavior of Human Hepatoma-Derived Growth Factor on SMYD1.

The protein-induced fluorescence change technique was employed to investigate the interactions between proteins and their DNA substrates modified with the Cy3 fluorophore. It has been reported that the human hepatoma-derived growth factor (HDGF), containing the chromatin-associated N-terminal proline-tryptophan-tryptophan-proline (PWWP) domain (the N-terminal 100 amino acids of HDGF) capable of binding the SMYD1 promoter, participates in various cellular processes and is involved in human cancer. This project investigated the specific binding behavior of HDGF, the PWWP domain, and the C140 domain (the C-terminal 140 amino acids of HDGF) sequentially using protein-induced fluorescence change. We found that the binding of HDGF and its related proteins on Cy3-labeled 15 bp SMYD1 dsDNA will cause a significant decrease in the recorded Cy3 fluorophore intensity, indicating the occurrence of protein-induced fluorescence quenching. The dissociation equilibrium constant was determined by fitting the bound fraction curve to a binding model. An approximate 10-time weaker SMYD1 binding affinity of the PWWP domain was found in comparison to HDGF. Moreover, the PWWP domain is required for DNA binding, and the C140 domain can enhance the DNA binding affinity. Furthermore, we found that the C140 domain can regulate the sequence-specific binding capability of HDGF on SMYD1.

Validation of shikimate dehydrogenase as the herbicidal target of drupacine and screening of target-based compounds with high herbicidal activity

The discovery of new targets and lead compounds is the key to developing new pesticides. The herbicidal target of drupacine has been identified as shikimate dehydrogenase (SkDH). However, the mechanism of interaction between them remains unclear. This study found that drupacine specifically binds to SkDH with a dissociation equilibrium constant (KD) of 8.88 μM and a Kd value of 2.15 μM, as confirmed by surface plasmon resonance and microscale thermophoresis. Site-directed mutagenesis coupled with fluorescence quenching analysis indicated that residue THR431 was the key amino acid site for drupacine binding to SkDH. Nine compounds with the best binding ability to SkDH were identified by virtual screening from about 120,000 compounds. Among them, compound 8 showed the highest inhibition rate with values of 41.95% against SkDH, also exhibiting the strongest herbicidal activity. This research identifies a novel potential target SkDH and a candidate lead compound with high herbicidal activity for developing new herbicides.

Exploring the Role of Neuropeptide PACAP in Cytoskeletal Function Using Spectroscopic Methods.

The behavior and presence of actin-regulating proteins are characteristic of various clinical diseases. Changes in these proteins significantly impact the cytoskeletal and regenerative processes underlying pathological changes. Pituitary adenylate cyclase-activating polypeptide (PACAP), a cytoprotective neuropeptide abundant in the nervous system and endocrine organs, plays a key role in neuron differentiation and migration by influencing actin. This study aims to elucidate the role of PACAP as an actin-regulating polypeptide, its effect on actin filament formation, and the underlying regulatory mechanisms. We examined PACAP27, PACAP38, and PACAP6-38, measuring their binding to actin monomers via fluorescence spectroscopy and steady-state anisotropy. Functional polymerization tests were used to track changes in fluorescent intensity over time. Unlike PACAP27, PACAP38 and PACAP6-38 significantly reduced the fluorescence emission of Alexa488-labeled actin monomers and increased their anisotropy, showing nearly identical dissociation equilibrium constants. PACAP27 showed weak binding to globular actin (G-actin), while PACAP38 and PACAP6-38 exhibited robust interactions. PACAP27 did not affect actin polymerization, but PACAP38 and PACAP6-38 accelerated actin incorporation kinetics. Fluorescence quenching experiments confirmed structural changes upon PACAP binding; however, all studied PACAP fragments exhibited the same effect. Our findings indicate that PACAP38 and PACAP6-38 strongly bind to G-actin and significantly influence actin polymerization. Further studies are needed to fully understand the biological significance of these interactions.

Comparative analysis of multi-effect evaporators in an ammonium acetate concentration process for L-methionine production

The process of treating an acetic acid aqueous solution generated during L-methionine production with ammonia and recovering a highly concentrated ammonium acetate aqueous solution using a multi-effect evaporator process was studied. The electrolyte non-random two-liquid model was applied to calculate the activity in the electrolyte solution, and the Hayden-O’Connell model was used to consider the dimerization reaction of acetic acid in the vapor phase. The dissociation equilibrium constant of acetic acid was modeled based on experimental values, and all other thermodynamic property models and parameters were used as implemented in the Aspen Plus software. Economic evaluation was carried out with various sensitivity tests, considering the loss of acetic acid and ammonia, as well as the steam cost. Evaporator operation was found to be more economical when the molar ratio of acetic acid to ammonia was equal, feed concentration was high, feed flow rate was low, and evaporator temperature was low. These results were confirmed in actual plant operations, with significant correlations between the feed flow rate and evaporator temperature. Our findings have significant implications for the development of sustainable and economical L-methionine production methods that enable the recycling of ammonium acetate.

Charge Regulation Effects in Polyelectrolyte Adsorption.

Polyelectrolyte (PE) adsorption plays a pivotal role in tailoring surface properties, finding diverse applications across scientific and industrial domains. In aqueous environments, these polymers gain charge through the dissociation equilibrium of ionizable groups. Consequently, accurately representing their electrostatic interactions necessitates considering many-body couplings between charge and configuration-a phenomenon known as charge regulation (CR)-instead of relying on the constant charge approximation. Here, we show that CR effects can significantly enhance PE adsorption. In the vicinity of a like-charged interface, where short-range PE-surface attraction drives adsorption, both PEs and the surface undergo a reduction in charges during the adsorption process, especially in a semidilute PE solution. This reduction in charges leads to a noticeable decrease in the electrostatic repulsion barrier, facilitating the adsorption process. Conversely, near an oppositely charged surface, CR effects enhance the electrostatic charges of both PEs and surfaces coherently, suppressing the charge reversal of surface charges and ultimately promoting adsorption. These findings underscore the crucial CR effects in PE adsorption and challenge the direct use of electrostatic charges, typically estimated in bulk systems, for an accurate understanding of adsorption phenomena.

Suppressing Shuttle Effect via Cobalt Phthalocyanine Mediated Dissociation of Lithium Polysulfides for Enhanced Li‐S Battery Performance

AbstractCationic lithium polysulfides (LiPSs) within ether‐based electrolytes are essential intermediates pivotal in instigating the shuttle effect. Suppressing the generation of cationic LiPSs is crucial for enhancing the performance of high‐energy‐density Li‐S batteries in practical applications. Herein, for the first time, it is demonstrated that cobalt phthalocyanine (CoPc) can significantly enhance the dissociation of LiPSs, leading to a decrease in cationic LiPSs species within the electrolyte. Employing NMR and in‐situ Raman spectroscopy, it is observed that CoPc interacts with sulfur anions within LiPSs, modifying the dissociation equilibrium of LiPSs in 1,2‐dimethoxyethane (DME)/1,3‐dioxolane (DOL) electrolyte. This CoPc‐mediated shift toward dissociation equilibrium reduces the concentration of cationic LiPSs, effectively suppressing the electromigration of LiPSs intermediates toward the Li anode during the charging process of Li‐S battery. As a result, the Li‐S battery enabled a high reversible areal capacity of 4.2 mAh cm−2 at a high sulfur loading of 5.0 mg cm−2 and a low electrolyte/sulfur (E/S) ratio of 3 µL mgs−1. This work affords a promising strategy for tackling the fundamental challenges regarding Li‐S batteries.

Online neutralization promotes water dissociation equilibrium forward in bipolar membranes to achieve 9.2 mol/L NaOH production

The bipolar membrane electrodialysis is a promising caustic soda production technique by taking advantage of the water dissociation under a reverse voltage bias. However, dissociation equilibrium is easily reached when forward water dissociation is equivalent to the back diffusion of acid and base into the salt chamber. Here, we propose manipulating the water dissociation equilibrium by introducing an online neutralization reaction for acid or base products. The results indicate that the online neutralization of the acid product could promote water dissociation forward in bipolar membranes, leading to an increase in the base yield of 27.7 % and a saving of 43.7 % in time in parallel with conventional operation. The boosting water dissociation via online acid neutralization results in the production of 9.2 mol/L NaOH, the highest recorded base concentration produced by bipolar membrane electrodialysis. The present study provides a simple and unique approach for manipulating the water dissociation equilibrium, suggesting the increasingly crucial role of bipolar membranes in base production.

Investigating Oxidative Stress Associated with Myocardial Fibrosis by High-Fidelity Visualization and Accurate Evaluation of Mitochondrial GSH Levels.

Myocardial fibrosis is frequently accompanied by elevated levels of oxidative stress. Mitochondrial glutathione (mGSH), an essential biomolecule for maintaining redox homeostasis in mitochondria, could serve as an effective indicator for investigating the oxidative stress associated with myocardial fibrosis. In this study, a ratiometric fluorescent probe named Mito-NS6, capable of being anchored in mitochondria and reversibly responding to GSH with an appropriate dissociation equilibrium constant, was rationally designed and utilized to visualize and evaluate the changes of mGSH levels caused by oxidative stress in myocardial fibrosis. Benefiting from the good performance of Mito-NS6, we successfully achieved the quantification of mGSH in cardiac fibroblasts using a confocal laser-scanning microscope, revealing that salvianolic acid B (SalB) can act as an effective drug to alleviate myocardial fibrosis through depressing oxidative stress. Moreover, we employed ratio fluorescence imaging to track the fluctuation in GSH levels within a mice model of myocardial fibrosis induced by isoproterenol and found that myocardial fibrosis caused a higher oxidative stress level in myocardial tissue as well as heart organs. These results provide a novel point of view for the diagnosis and treatment of myocardial fibrosis.

Solvent-Dependent Emissions Properties of a Model Aurone Enable Use in Biological Applications.

Fluorophores are powerful visualization tools and the development of novel small organic fluorophores are in great demand. Small organic fluorophores have been derived from the aurone skeleton, 2-benzylidenebenzofuran-3(2H)-one. In this study, we have utilized a model aurone derivative with a methoxy group at the 3' position and a hydroxyl group at the 4' position, termed vanillin aurone, to develop a foundational understanding of structural factors impacting aurone fluorescence properties. The fluorescent behaviors of the model aurone were characterized in solvent environments differing in relative polarity and dielectric constant. These data suggested that hydrogen bonding or electrostatic interactions between excited state aurone and solvent directly impact emissions properties such as peak emission wavelength, emission intensity, and Stokes shift. Time-dependent Density Functional Theory (TD-DFT) model calculations suggest that quenched aurone emissions observed in water are a consequence of stabilization of a twisted excited state conformation that disrupts conjugation. In contrast, the calculations indicate that low polarity solvents such as toluene or acetone stabilize a brightly fluorescent planar state. Based on this, additional experiments were performed to demonstrate use as a turn-on probe in an aqueous environment in response to conditions leading to planar excited state stabilization. Vanillin aurone was observed to bind to a model ATP binding protein, YME1L, leading to enhanced emissions intensities with a dissociation equilibrium constant equal to ~ 30 µM. Separately, the aurone was observed to be cell permeable with significant toxicity at doses exceeding 6.25 µM. Taken together, these results suggest that aurones may be broadly useful as turn-on probes in aqueous environments that promote either a change in relative solvent polarity or through direct stabilization of a planar excited state through macromolecular binding.

Effect of sec-butyl alcohol on CO2 hydrate equilibrium conditions

Thermodynamic inhibitors may be used to inhibit hydrate formation in industry. Alcohol substances, due to their hydrophilic hydroxyl groups in their molecular structure, are prone to form hydrogen bond with water molecules to inhibit hydrate formation. In this work, sec-butyl alcohol is chosen to study the effects on CO2 hydrate dissociation equilibrium conditions, where the step-heating method is utilized to obtain hydrate equilibrium conditions. The equilibrium curve of carbon dioxide hydrate dissociation moves to the region of lower temperatures or higher pressures. The higher mass fraction of sec-butyl alcohol, the better effect of inhibiting hydrate formation. Sec-butyl alcohol can be used as a thermodynamic hydrate inhibitor.

Mechanism of electrochemical carbon dioxide reduction to formate on tin electrode

Carbon dioxide can be electrochemically reduced to formate on tin electrodes. Formate is one of the most economically viable products of CO2 reduction reaction (CO2RR). While CO2 is reduced to formate, hydrogen evolution reaction (HER) occurs concomitantly. The kinetics of CO2RR and HER on the tin electrode was investigated. Potentiodynamic polarization studies were conducted in CO2 saturated and N2 saturated 0.1 M KHCO3 solutions, in the potential range from −0.014 V to −1.59 V vs. RHE. A faradaic efficiency of 93.95 % towards formate production was obtained at −1.09 V vs. RHE. The mass transfer effects and bicarbonate dissociation equilibrium were used to estimate the concentration of the reactants at the electrode surface. Density functional theory calculations indicate that –OCHO intermediate species is thermodynamically favoured, and a four-step reaction with two intermediates is proposed. The proposed mechanism captures the major features of the polarization data. CO2 reduction occurs via two intermediate species, viz. adsorbed H and OCHO species, while HER occurs via Volmer-Heyrovsky steps. The model predicts that in N2 saturated solutions, the fractional surface coverage of adsorbed H reaches a maximum of ∼0.48 at a potential of −0.82 V vs. RHE while in CO2 saturated solutions, the corresponding value is ∼0.29. In addition, the maximum fractional surface coverage of adsorbed OCHO is predicted to be ∼0.12 in CO2 saturated solutions.

Facile Ligand Exchange of Ionic Ligand-Capped Amphiphilic Ag2S Nanocrystals for High Conductive Thin Films.

A surface ligand modification of colloidal nanocrystals (NCs) is one of the crucial issues for their practical applications because of the highly insulating nature of native long-chain ligands. Herein, we present straightforward methods for phase transfer and ligand exchange of amphiphilic Ag2S NCs and the fabrication of highly conductive films. S-terminated Ag2S (S-Ag2S) NCs are capped with ionic octylammonium (OctAH+) ligands to compensate for surface anionic charge, S2-, of the NC core. An injection of polar solvent, formamide (FA), into S-Ag2S NCs dispersed in toluene leads to an additional envelopment of the charged S-Ag2S NC core by FA due to electrostatic stabilization, which allows its amphiphilic nature and results in a rapid and effective phase transfer without any ligand addition. Because the solvation by FA involves a dissociation equilibrium of the ionic OctAH+ ligands, controlling a concentration of OctAH+ enables this phase transfer to show reversibility. This underlying chemistry allows S-Ag2S NCs in FA to exhibit a complete ligand exchange to Na+ ligands. The S-Ag2S NCs with Na+ ligands show a close interparticle distance and compatibility for uniformly deposited thin films by a simple spin-coating method. In photoelectrochemical measurements with stacked Ag2S NCs on ITO electrodes, a 3-fold enhanced current response was observed for the ligand passivation of Na+ compared to OctAH+, indicating a significantly enhanced charge transport in the Ag2S NC film by a drastically reduced interparticle distance due to the Na+ ligands.

Expression of NELL2/NICOL-ROS1 lumicrine signaling-related molecules in the human male reproductive tract.

The maturation of spermatozoa is a regulated process, influenced by genes expressing essential secreted proteins in the proximal epididymis. Recent genetic studies in rodents have identified the non-sex steroidal molecular signals that regulate gene expression in the proximal epididymis. Germ cells in the testis secrete ligand proteins into the seminiferous tubule lumen The ligand proteins travel through the male reproductive tract lumen to the epididymis, where they bind to receptors, triggering the differentiation of the luminal epithelium for sperm maturation. It is, however, not fully unveiled if such a testis-epididymis trans-luminal signaling mechanism exists in other species, especially humans. In the present study, the rodent-type testis-epididymis trans-luminal signaling in the human male reproductive tract was evaluated in a step-by-step manner by analyzing testis and epididymis gene expression and signaling mediator protein function. There was a significant correlation between the epididymal expressions of mouse genes upregulated by the trans-luminal signaling and those of their human orthologs, as evaluated by the correlation coefficient of 0.604. The transcript expression of NELL2 and NICOL encoding putative ligand proteins was also observed in human testicular cells. In vitro experiments demonstrated that purified recombinant human NELL2 and NICOL formed a molecular complex with similar properties to rodent proteins, which was evaluated by a dissociation equilibrium constant of 110 nM. Recombinant human NELL2 also specifically bound to its putative receptor human ROS1 in vitro. Collectively, these findings suggest that the rodent-type testis-epididymis secreted signaling mechanism is also possible in the human male reproductive tract.

Radical chain mechanism for the S2O8 2--S2O3 2--Cu(ii) flow system explains high-amplitude pH oscillations in the NH4OH-modified version.

Peroxodisulfate is well known as an important reagent in analytical, environmental and other branches of chemistry, as well as in industrial processes. One of the most studied oxidative reactions peroxodisulfate participates in as an oxidizer is the Cu(ii)-catalyzed peroxodisulfate-thiosulfate reaction. When carried out in a flow reactor, this system shows oscillatory dynamics characterized by periodic changes in the Pt-potential and [O2] while it only displays variation in the pH with a few tenths of unit magnitude. Our recent experiments unveiled an increase of the amplitude of the pH oscillations that exceeds 4 units when NH4OH was introduced into the oscillatory flow system. The dynamics of Cu(ii)-catalyzed peroxodisulfate-thiosulfate reaction has been described in detail but the chemical mechanism explaining the oscillatory behavior has not been established. Based on what is known about the uncatalyzed reaction between peroxodisulfate and thiosulfate in the literature, we have developed a mechanism that includes radical chain reactions which can explain the oscillatory phenomena. The proposed mechanism includes 13 reactions with the radical ions SO4˙-, S2O3˙-, S2O8˙-, OH˙ and two acid-base equilibria, including the dissociation equilibrium of NH4OH accounting for its effect on the amplitude of pH oscillations. Using this model, we successfully simulated the behavior of this system: (1) the evolution of the concentrations of the initial reagents, radicals, and catalyst over time in batch configuration, (2) the periodic changes in the concentrations of radicals and the oxidized and reduced forms of the catalyst, pH and [O2] in flow conditions. Our model also explains the amplification of the pH cycles without impacting the redox processes when NH4OH is added, which is a novel phenomenon observed in nonlinear chemical reactions. The high amplitude pH oscillations we report in the peroxodisulfate-thiosulfate-Cu(ii)-NH4OH flow reaction may enable future applications where this system may serve (a) as a core oscillator in coupled chemical systems, or (b) as a pH oscillator capable of running in a closed reactor configuration.

Electrostatic interactions and structural transformations in viral shells.

Structural transformations occurring in proteinaceous viral shells (capsids) can be induced by changing the pH of bathing solution, thus modifying the dissociation equilibrium of ionizable amino acids in proteins. To analyze the effects of electrostatic interactions on viral capsids, we construct a model of 2D isotropic elastic shells with embedded point charges located in the centers of mass of individual proteins. We find that modification of the electrostatic interactions between proteins affects not only the size and shape of capsids, but in addition induces substantial deformations of hexamers in capsid structures. Using bacteriophage P22 and Nudarelia capensis omega virus (NωV) as examples, we analyze the capsid faceting and propose an explanation as to why the hexamers in spherical procapsid are skewed, while they acquire a regular shape in the faceted state. Also, we examine the electrostatic and elastic effects that can explain different shapes of coronavirus shells decorated with spikes, which are often localized in compact areas over the shell surface. The proposed mechanism of local curvature generation is supported by the remarkable correspondence between the shell shape and the distribution of spikes in model and observed shells.