Enzyme Profiles Research Articles

Semen Quality Correlation with Seminal Biochemistry and Enzymatic Profile of Barbari and Sirohi Bucks under Sub Tropical Environment

Background: The objective was to study the effect of seasonal variation on reproductive parameters, biochemical parameters and enzymes activity in relation to buck semen quality which would assist to produce good quality sperm doses for artificial insemination in goat farming. Methods: Four ejaculates fortnightly were collected from adult breeding Sirohi and Barbari bucks during summer and winter season by using artificial vagina for the study. Average meteorological data were recorded during the study. Reproductive parameters (scrotal temperature and scrotal circumference) were recorded and fresh semen samples were used for evaluation of sperm attributes (semen volume, pH, sperm concentration, mass motility, individual activity and live-dead sperm count). The seminal plasma was separated by from semen for estimation of different biochemical parameters (Total protein, Albumin, Total cholesterol and Calcium) and seminal enzymes activity (ALT, AST, ALP and LDH). Result: It was observed that sperm attributes and biochemical parameters were significantly (p less than 0.05) increased during winter as compared to summer season in both breed. No significant difference was observed for ALT in both breeds and seasons. Whereas, in summer AST activity was significantly (p less than 0.05) lower than winter in both the breeds. In summer season ALP and LDH activity were significantly (p less than 0.05) higher than winter in both the breeds. A positive correlation had observed with seminal biochemical parameters whereas a negative correlation with ALP and LDH. In conclusion, season influenced the semen quality in Barbari and Sirohi bucks and good quality semen produce during winter as compared to summer.

Establishing a comprehensive web-based analysis platform for Nicotiana benthamiana genome and transcriptome.

Nicotiana benthamiana has long served as a crucial plant material extensively used in plant physiology research, particularly in the field of plant pathology, because of its high susceptibility to plant viruses. Additionally, it serves as a production platform to test vaccines and other valuable substances. Among its approximately 3.1 Gb genome, 57 583 genes have been annotated within a 61 Mb region. We created a comprehensive and easy-to-use platform to use transcriptomes for modern annotation. These tools allow to visualize gene expression profiles, draw molecular evolutionary phylogenetic trees of gene families, perform functional enrichment analyses, and facilitate output downloads. To demonstrate their utility, we analyzed the gene expression profiles of enzymes within the nicotine biosynthesis pathway, a secondary metabolic pathway characteristic of the Nicotiana genus. Using the developed tool, expression profiles of the nicotine biosynthesis pathway genes were generated. The expression patterns of eight gene groups in the pathway were strongly expressed in the roots and weakly expressed in leaves and flowers of N. benthamiana. The results were consistent with the established gene expression profiles in Nicotiana tabacum and provided insights into gene family composition and expression trends. The compilation of this database tool can facilitate genetic analysis of N. benthamiana in the future.

Exploring Saline Desert Actinomycetes for Novel Anti-MRSA Antibiotic Production

This study explores the potential of saline desert microflora from the Little Rann of Kutch as a source of novel antibiotics targeting Methicillin-resistant Staphylococcus aureus (MRSA). Representative sites were sampled, and actinomycetes were isolated using selective media and pretreatment methods. Biochemical testing, extracellular enzyme profiling, and morphological characterization were performed. The effects of saline and alkaline conditions on growth and antibiotic production were evaluated. Submerged fermentation was employed for antibiotic production, which was tested against MRSA strains using agar well diffusion assays. Minimum inhibitory and bactericidal concentrations were determined, demonstrating the significant potential of saline desert microflora in addressing antibiotic resistance.

Study on the protective mechanism of Xuemaitong Capsule against acute myocardial ischemia rat based on network pharmacology and metabolomics

BackgroundXuemaitong Capsule (XMT) is a widely recognized traditional Miao medicine extensively utilized in Chinese clinical settings. Previous studies have demonstrated XMT protective effects against acute myocardial ischemia (AMI). However, the mechanism by which XMT provides protection to AMI rats is yet to be fully understood. Aim of the studyThe purpose of this study was to investigate the protective mechanism of XMT on AMI rats through network pharmacology, traditional pharmacodynamics and metabolomics. Material and methodsThe components and potential targets of XMT were identified through the application of traditional Chinese medicine system pharmacology and traditional Chinese medicine molecular mechanism bioinformatics analysis tools. We constructed herb-composition-target networks and analyzed protein–protein interaction (PPI) networks. The potential mechanism was explored by pathway enrichment analysis. Subsequently, the AMI model was constructed by ligation of the anterior descending branch of the left coronary artery, and XMT protective effects on AMI rats were evaluated by analyzing the myocardial enzyme profiles, electrocardiograms(ECG), Triphenyltetrazolium chloride(TTC) staining, and Hematoxylin-Eosin (HE) staining in AMI rats. Metabolomics based on UHPLC-Q-Exactive Orbitrap MS was used to observe the protective effect of XMT on the serum metabolic profile of AMI, and multivariate statistical analysis further revealed the differential patterns of metabolites after XMT treatment. Finally, integrated pathway analysis was carried out to reveal the biological metabolic mechanism. ResultsA total of 392 active components of XMT acted with 624 targets for treating AMI. Pathway enrichment analysis revealed that XMT could treat AMI through TNF, MAPK and PI3K-Akt signaling pathways. Further, XMT could effectively prevent ST-segment elevation in the ECG, reduce the size of myocardial infarction, decrease cardiac weight index and cardiac enzyme levels, and mitigate histological damage in the hearts of AMI rats. In addition, XMT callback 117 metabolites and four metabolic pathways, including taurine and hypotaurine metabolism, phenylalanine metabolism, pyrimidine metabolism and retinol metabolism. Through integrating network pharmacology and metabolomics, we explored the biological mechanism by which XMT treats AMI. It was speculated that the mechanism of XMT is to regulate TNF signaling, PI3K-Akt pathway and MAPK signaling pathway, and participate in cell apoptosis, oxidative stress, immune and inflammatory reaction and other biological processes. ConclusionXMT plays a protective role in AMI rats by regulating multiple metabolic biomarkers, multiple targets and pathways. Therefore, XMT may provide a potential strategy for the treatment of AMI.

Natural Amelioration of Chocolate-Induced Acidity: The Role of Pineapple in Maintaining Oral pH Balance

The consumption of chocolate, especially varieties high in sugar, can disrupt the delicate pH balance in the oral cavity, increasing the risk of dental caries. Pineapple, with its rich enzymatic and organic acid profile, presents a potential natural solution to counteract this acidic challenge. This study investigates the efficacy of pineapple consumption in mitigating the pH-lowering effects of chocolate and its impact on saliva volume, a crucial factor in maintaining oral health. A quasi-experimental design with a pre-test and post-test control group approach was employed. Participants included children aged 6-9 years (n=40), divided into two groups: a control group (chocolate consumption only) and an intervention group (chocolate consumption followed by pineapple consumption). Saliva volume and pH were measured before and after treatment, and the data were analyzed using paired t-tests. Pineapple consumption significantly increased saliva volume in the intervention group (from 2.01±1.29 mL to 5.3±0.88 mL, p<0.05), exceeding the volume observed in the control group. Furthermore, the decrease in saliva pH in the intervention group (from 7.45±0.13 to 6.25±0.37) was more controlled compared to the control group (from 7.30±0.09 to 5.28±0.25). In conclusion, the consumption of pineapple after chocolate effectively stimulates saliva production and helps maintain a balanced oral pH, mitigating the acidic effects of chocolate and potentially reducing the risk of dental caries. These findings suggest the potential of pineapple as a natural, dietary approach to support oral health.

Spatio-temporal distribution and biotechnological potential of culturable yeasts in the intertidal sediments and seawater of Aoshan Bay, China.

Marine yeasts play a crucial role in marine microbial ecology, facilitating the biogeochemical cycling of carbon and nitrogen in marine ecosystems, while also serving as important reservoirs of bioactive compounds with extensive applications in pharmaceuticals, agriculture, and various industries. Intertidal flats, characterized by their complex ecological dynamics, are postulated to harbor a wealth of yeast resources. This study employed a culture-dependent approach to assess the diversity, spatio-temporal distribution, and biotechnological potential of yeast communities residing within the intertidal sediments and seawater of Aoshan Bay. A total of 392 yeast strains were identified from 20 distinct genera, encompassing 43 recognized species and four candidate novel species. Notably, 17 of these species were identified as novel occurrences in marine environments, underscoring the rich yeast biodiversity of the Aoshan Bay ecosystem, with Candida emerging as the dominant genus in both sedimentary and aqueous habitats. Yeast community composition exhibited significant spatial and temporal variation, with peak diversity and abundance observed in autumn, the subtidal zone, and the surface soil layer. No clear pattern, however, emerged linking these shifts to specific changes in community composition, highlighting the complex interactions between microbial communities, environmental variables, and anthropogenic disturbance. Although several yeast species isolated here have been previously recognized for their biotechnological potential, their diverse and abundant extracellular enzyme profiles were characterized, further highlighting their crucial role in organic matter decomposition and nutrient cycling within the tidal ecosystem, as well as their potential applicability in the food, fine chemical, textile, and pharmaceutical industries.IMPORTANCEThis study presents groundbreaking insights into the yeast diversity of Aoshan Bay, offering invaluable information on their spatial and temporal distribution patterns, as well as their biotechnological potential in the tidal environment. The findings reveal that the eutrophic intertidal flat is a rich repository of yeasts with abundant extracellular enzymatic activity and an important role in nutrient cycling and decomposition processes. Also, these yeasts serve as crucial indicators of ecosystem health and function and are excellent candidates for biotechnological and industrial applications. Collectively, this study not only expands our knowledge of the diversity and distribution of intertidal yeasts but also highlights their promising potential for biotechnological applications.

Microbial consortia for multi-plastic waste biodegradation: Selection and validation

The accumulation of plastic waste in the environment poses significant ecological and health risks. This study evaluates the effectiveness of microbial consortia in degrading various types of plastics, including low-density polyethylene (LDPE), low linear-density polyethylene (LLDPE), polyethylene terephthalate (PET) and polystyrene (PS). Qualitative enzyme assays for esterases and ligninases, which are related to plastic biodegradation, were conducted in five microbial strains. Four microbial consortia, combining bacterial and fungal strains, were assembled based on the enzyme profile of their components and evaluated for their ability to degrade both virgin and recycled plastics. The results showed that consortia C2 (Bacillus subtilis RBM2, Fusarium oxysporum RHM1, and Alternaria alternata RHM4) and C4 (Bacillus subtilis RBM2 and Pseudomonas alloputida REBP7) exhibited the highest biodegradation efficiency, particularly achieving significant weight loss in recycled LDPE, virgin LLDPE and recycled PET. The biodegradation was further confirmed by FTIR analysis, which revealed changes in the chemical composition and functional groups of the treated plastics, indicating microbial interaction and degradation. This study underscores the potential of microbial consortia in addressing plastic pollution, highlighting the importance of strategic consortia design based on enzymatic profiles and plastic colonization capabilities. These promising results suggest that further optimization of microbial consortia could offer a viable solution for large-scale plastic waste management.

Characterization of the Peroxisomal Proteome and Redox Balance in Human Prostate Cancer Cell Lines.

Prostate cancer (PCa) is associated with disruptions in cellular redox balance. Given the intricate role of peroxisomes in redox metabolism, we conducted comprehensive proteomics analyses to compare peroxisomal and redox protein profiles between benign (RWPE-1) and malignant (22Rv1, LNCaP, and PC3) prostate cell lines. Our analyses revealed significant enrichment of the "peroxisome" pathway among proteins notably upregulated in androgen receptor (AR)-positive cell lines. In addition, catalase (CAT) activity was consistently higher in these malignant cell lines compared to RWPE-1, which contrasts with previous studies reporting lower CAT levels and increased H2O2 levels in PCa tissues compared to adjacent normal tissues. To mimic this clinical scenario, we used RNA interference to knock down CAT expression. Our results show that reduced CAT levels enhanced 22Rv1 and LNCaP cell proliferation. R1881-induced activation of AR, a key driver of PCa, increased expression of the H2O2-producing peroxisomal β-oxidation enzymes acyl-coenzyme A oxidase 1 and 3, reduced CAT expression and activity, and elevated peroxisomal H2O2 levels. Considering these changes and other antioxidant enzyme profile alterations, we propose that enhanced AR activity in PCa reduces CAT function, leading to increased peroxisomal H2O2 levels that trigger adaptive stress responses to promote cell survival, growth, and proliferation.

Metformin Attenuates Myocardial Ischemia-Reperfusion Injury through the AMPK-HMGCR-ROS Signaling Axis.

To explore the role and mechanism of metformin (MET) in regulating myocardial injury caused by cardiac ischemia-reperfusion. A rat model of myocardial ischemia-reperfusion injury was established by ligation of the anterior descending branch of the left coronary artery. The myocardial area at risk and the infarction size were measured by Evans blue and 2,3,5‑triphenyltetrazole chloride (TTC) staining, respectively. Terminal Deoxynucleotidyl Transferase-Mediated dUTP Nick End Labeling (TUNEL) staining was used to detect apoptosis of cardiomyocytes. The expression of 4‑hydroxynonenal (4‑HNE) was detected by immunohistochemical staining. Real-time quantitative polymerase chain reaction (RT-PCR) and Western blot were used to detect mRNA and expression of the Adenosine 5'-monophosphate-activated protein kinase (AMPK) - 3‑hydroxy-3‑methylglutaryl-CoA reductase (HMGCR) signaling pathway, respectively. MET treatment decreased the infarct size and the activity of the myocardial enzyme profile, thus demonstrating protection of ischemic myocardium. The number of TUNEL positive cells significantly decreased. Immunohistochemical results showed that MET decreased the expression of 4‑HNE in myocardial tissue and the content of malondialdehyde (MDA) in myocardial cells. Further experimental results showed that MET decreased HMGCR transcription and protein expression, and increased AMPK phosphorylation. In the model of hypoxia and reoxygenation injury of cardiomyocytes, MET increased the viability of cardiomyocytes, decreased the activity of lactic dehydrogenase (LDH), decreased malondialdehyde content and intracellular reactive oxygen species (ROS) concentrations, and regulate the AMPK-HMGCR signaling pathway through coenzyme C (ComC). MET inhibits the expression of HMGCR by activating AMPK, reduces oxidative damage and apoptosis of cardiomyocytes, and alleviates myocardial ischemia-reperfusion injury.

Discovery and evaluation of HW161023 as a potent and orally active AAK1 inhibitor

AAK1, also known as AP2-associated protein kinase 1, is an enzyme that belongs to the family of serine/threonine protein kinases. It regulates the assembly and disassembly of clathrin-coated pits and thereby protein endocytosis, by phosphorylating the μ2 subunit of the AP2 complex, which is a key component of clathrin-coated vesicles. LX9211 is currently the only selective small molecule AAK1 inhibitor at the clinical trial stage for diabetic peripheral neuropathic pain, which was found to be safe and well tolerated in healthy participants in phase I clinical trials. The present manuscript described a series of fused-ring derivatives as a novel class of potent AAK1 inhibitors, resulting in the discovery of compound 5, namely HW161023, which showed high inhibitory potency against AAK1 enzyme and satisfactory oral pharmacokinetic profile with weaker HepG2 cell toxicity and hERG inhibition than LX9211.

Lysosomal Acid Lipase Deficiency Investigation In Patients Diagnosed With Primary Hyperlipidemia

Objective: Cholesteryl ester storage disease (CESD) is a disease where a considerable decrease in the activity of lysosomal acid lipase (LAL) enzyme resulting from the mutation in lipa (lysosomal acid lipase) gene is observed, which goes along with dyslipidemia and involves a wide clinical condition ranging from hepatosteatosiz to liver fibrozis; and whose diagnosis is usually skipped. LAL deficiency should be taken into consideraiton for patients who are suffering from hepatosplenomegaly and/or high transaminase level, high ldl and/or low hdl without having problems of obesity or metabolic syndrome. Methods: Our study included 75 patients who applied to Gaziantep University Faculty of Medicine Pediatric Endocrinology and Metabolic Diseases Clinic, 35 patients were excluded out of study because of having secondary hyperlipidemia, 15 patients were diagnosed with non-familial hyperlipidemia, and 25 patients were diagnosed with familial hyperlipidemia. Patients were divided into three groups according to phenotypes; type 2, type 3 and type 5, at the same time patients were divided into three groups according to the treatment as applying lipid aferesis, lipid lowering treatment and dieting, and only dieting group. Gender, age, height, weight, height standard deviation score, weight standard deviation score, follow-up period, complaints, relative body weight were recorded. Lipid profiles, transaminase levels, complete blood count, hormone profiles, bone densitometry (DEXA), echocardiography and LAL enzyme profiles of patients were evaluated. Blood samples were taken to filter paper from totally 40 patients; 15 patients with non-familial hyperlipidemia to eveluate LAL activity and also the same samples were taken from 15 patients with primary hyperlipidemia and 25 patients with familial hyperlipidemia to eveluate LAL levels. Results: We determined the LAL enzyme levels at the normal reference ranges in all of 40 patients with primary hyperlipidemia. Conclussion: In our study there was no relationship between familial hyperlipidemia and lal levels but we think results must be eveluated with the larger number of patients.

Effect of Herbal Liver-tonic Supplements on Production Performance in HF Dairy Cattle

A study was conducted to observe the influence of herbal liver-tonic supplementation on milk production, liver function and feed intake in HF crossbred dairy cattle at field level. This study was carried out in 24 HF cattle and these were randomly grouped into three groups viz. Group 1 served as control group, Group II served as Treatment -I (supplemented with polyherbal liver tonic @ 30ml/day) and Group III as Treatment-2 (supplemented with polyherbal liver tonic @ 45ml/day). Day 1 to 7 is considered as before treatment, Day 8 to 17 as treatment period and day 18 to 32 as after treatment. The blood collected during study period and stored at -20 °C until further analysis. The data were also regularly recorded for milk production, SNF Content of milk, feed intake. Statistical analysis of result revealed that herbal liver-tonic supplementation showed non-significant (P>0.05) difference on liver enzymes profile. Statistically no significant difference is also noted on milk production, milk fat and SNF Content in HF Cattle at field conditions.

Toxicity effects of hexavalent chromium on hematological, biochemical and digestive enzyme profiles of Labeo rohita (Hamilton, 1822).

The study provides a descriptive understanding of the toxic effect of heavy metal chromium on the hematological, biochemical, and digestive enzyme profiles in the fingerlings of Labeo rohita. The 96-h LC50 of hexavalent chromium was found to be 15.76 mg/L. Further, the toxicity study was conducted with four different sub-lethal concentrations of 96-h LC50 viz. 1/40th, 1/20th, 1/10th, and 1/5th respectively. The blood samples from the control and treated groups exposed to different concentrations were examined for various physiological parameters. The obtained data showed that, with the increase in sub-lethal concentration, a significant decrease (p < 0.05) in red blood cell (RBCs), hemoglobin (Hb), and hematocrit (Hct) was observed, while total white blood cell (WBCs), mean corpuscular volume (MCV), and mean corpuscular hemoglobin (MCH) increased significantly (p < 0.05) in all the treatments. Fishes exposed to chromium for 30 days responded by becoming hyperglycemic, hyperproteineric, and hypoalbuminemia with a gradual rise in concentrations. Alteration in the intestinal digestive enzyme profiles was also observed after 30 days of study. The activity of protease (89.76%), and amylase (41.88%) decreased in the intestine with the highest concentration compared to the control. Conversely, compared to the control, the highest concentration resulted in an increase (146%) in lipase activity. Overall, this study has greatly enhanced our comprehension of the impact of chromium toxicity on various hematological, biochemical, and digestive enzyme parameters in Labeo rohita.

Comparing the frequency, antifungal susceptibility, and enzymatic profiles of the oral fungal composition in patients with and without Alzheimer's disease admitted to a neurology clinic.

Studies have shown that changes in the frequency of oral microorganisms may play a key role in the development of Alzheimer's disease (AD). However, no research has been conducted on the oral fungal composition in AD-patients. The present study aimed to investigate the changes in the frequency of oral fungal composition, the antifungal susceptibility, and the enzymatic profiles of oral fungal composition in patients suffering from AD compared to non-AD individuals. In the present analytical cross-sectional study during 12 months, 76 hospitalized patients with AD were matched with 76 individuals without AD. A sterile serum physiology-moistened cotton-tipped swab was used to sample the mouth area. All swabs were cultured on Sabouraud Chloramphenicol Agar. Fungal identified were confirmed through the PCR-sequencing techniques. Enzyme activity index (EAI) for important pathogenic factors including proteinase, esterase and hemolysin was measured using relevant protocols. The susceptibility to 8 antifungal agents (nystatin, voriconazole, itraconazole, fluconazole, posaconazole, amphotericin B, 5-fluorocytosine, and caspofungin) against fungal strains obtained from AD-patients was evaluated according to the Clinical and Laboratory Standards Institute (CLSI) guidelines, document M38-A2 for filamentous fungi, and document M27-A4 for yeasts. The results showed that compared to the non-AD individuals, the prevalence of oral fungal composition in AD group was 1.6 times higher. Candida albicans was the most common fungal species isolated from oral swab samples of AD group (n=53, 80%) and non-AD group (n=28, 40%), and the diversity of the oral fungal composition in AD-patients were lower than non-AD individuals. Among the 3 investigated virulence factors, a statistically significant difference was shown in terms of hemolysin activity level between the two studied groups (p<0.05) and the activity level of esterase and proteinase enzymes did not show a significant difference in the two studied groups (p>0.05). The results showed that almost all of the tested isolates were susceptible to nystatin, the most widely prescribed antifungal to treat superficial infections, and only 1.69 % (2/118) of the Candida isolates were resistant to this antifungal drug. Understanding the changes in the frequency of oral fungal composition the antifungal susceptibility, and the enzymatic profiles of oral fungal composition in patients suffering from AD compared to non-AD individuals makes it possible to better understand the etiology of this disease.

Tailored biolixiviation of spent LiCoO2 cathode batteries for sustainable metal recovery: Effects of consortia adaptation and particle size

With the rise of lithium-ion battery production, recycling valuable metals like Fe, Al, Cu, Ni, and Co is crucial. This study explores sustainable recovery from spent LiCoO2 cathode batteries via biolixiviation, focusing on microbial adaptation and particle size. Batteries were shredded into four size fractions, with mid-sized fractions (0.5–6 mm) showing the highest metal content and optimal microbial conditions. Microbial consortia were isolated using Modified Czapek-Dox (MCD) and M9 media. Metagenomic analysis revealed shifts in dominant bacteria, with Acidobacteria and Actinobacteria initially, and Chloroflexi, Firmicutes, and Proteobacteria later. Enzymatic profiling showed increased activity of key enzymes under metal-adapted conditions. Biolixiviation experiments revealed the highest metal recovery in mid-sized fractions at different conditions including the influence of microbial adaptation and the type of media used: Fe (47.2 %-53.0 %), Al (38.7 %-40.5 %), Cu (29.0 %-31.0 %), Ni (25.6 %-27.4 % in the largest fraction), and Co (40.1 %-41.0 %). Adapted consortia had higher recovery rates, offering a sustainable recycling route.

Comparative genomics reveals carbohydrate enzymatic fluctuations and herbivorous adaptations in arthropods

BackgroundArthropods represent the largest and most diverse phylum on Earth, playing a pivotal role in the biosphere. One key to their evolutionary success is their ability to feed on plant material. However, their endogenous enzymatic repertoire, which contributes to plant digestion, remains largely unexplored and poorly understood. ResultsWe analyzed 815 arthropod proteomes and identified a total of 268,171 carbohydrate-active modules. Our findings revealed a strong correlation between enzymatic content and feeding habits, with herbivorous species possessing significantly higher enzyme levels. We identified widespread carbohydrate-active families across the AA, CBM, GH, and GT classes, and observed a progressive increase in taxa-exclusive families in more recent arthropod lineages. Notably, we highlighted the impact of the transition from ametabolous to holometabolous development on carbohydrate metabolism, as well as the ecological adaptations of different species groups. By reconstructing the ancestral enzymatic profiles of arthropods, we identified significant fluctuations in 10 carbohydrate-active families over time. ConclusionsOur analysis advances the understanding of the evolutionary mechanisms utilized by the megadiverse phylum Arthropoda. We emphasize the critical role of herbivory as a selective force shaping enzymatic strategies, particularly those involved in carbohydrate metabolism. The distribution and exclusivity of carbohydrate-active families across different arthropod groups provide insights into their evolutionary trajectories and offer a clearer picture of the metabolic pathways that led their ancestors to their present forms.

Streptomyces fradiae Mitigates the Impact of Potato Virus Y by Inducing Systemic Resistance in Two Egyptian Potato (Solanum tuberosum L.) Cultivars

In this study, the impact of culture media filtrate of QD3 actinobacterial isolate on two potato cultivars, Spunta and Diamond, infected with potato virus Y (PVY) was investigated. Various parameters, including infection percentage, PVY virus infectivity, disease severity scoring, PVY optical density, photosynthetic and defense-related biochemical markers, enzymatic profiling, phenolic compounds, proline content, salicylic acid levels, and growth and yield parameters, were assessed to elucidate the potential of the QD3 actinobacterial isolate culture filtrate in mitigating PVY-induced damage. The physiological and biochemical characteristics of the QD3 actinobacterial isolate, including its salinity tolerance, pH preferences, and metabolic traits, were investigated. Molecular identification via 16S rRNA gene sequencing confirmed its classification as Streptomyces fradiae QD3, and it was deposited in GenBank with the gene accession number MN160630. Distinct responses between Spunta and Diamond cultivars, with Spunta displaying greater resistance to PVY infection. Notably, pre-infection foliar application of the QD3 filtrate significantly reduced disease symptoms and virus infection in both cultivars. For post-PVY infection, the QD3 filtrate effectively mitigated disease severity and the PVY optical density. Furthermore, the QD3 filtrate positively influenced photosynthetic pigments, enzymatic antioxidant activities, and key biochemical components associated with plant defense mechanisms. Gas chromatography‒mass spectrometry (GC‒MS) analysis revealed palmitic acid (hexadecanoic acid, methyl ester) and oleic acid (9-octadecanoic acid, methyl ester) as the most prominent compounds, with retention times of 23.23 min and 26.41 min, representing 53.27% and 23.25%, respectively, of the total peak area as primary unsaturated fatty acids and demonstrating antiviral effects against plant viruses. Cytotoxicity assays on normal human skin fibroblasts (HSFs) revealed the safety of QD3 metabolites, with low discernible toxicity at high concentrations, reinforcing their potential as safe and effective interventions. The phytotoxicity results indicate that all the seeds presented high germination rates of approximately 95–98%, suggesting that the treatment conditions had no phytotoxic effect on the Brassica oleracea (broccoli) seeds, Lactuca sativa (lettuce) seeds, and Eruca sativa (arugula or rocket) seeds. Overall, the results of this study suggest that the S. fradiae filtrate has promising anti-PVY properties, influencing various physiological, biochemical, and molecular aspects in potato cultivars. These findings provide valuable insights into potential strategies for managing PVY infections in potato crops, emphasizing the importance of Streptomyces-derived interventions in enhancing plant health and crop protection.

Organic matter-induced physiological responses and modulation of the enzymatic system in Sorghum bicolor (L) Moench genotypes cultivated in saline soil

Sorghum bicolor (L.) Moench is a crop with numerous applications that serves as a food source for humans and animals. However, soils with high salt concentrations compromise the initial development of the crop, and the addition of organic matter can mitigate the damage caused by salinity. The present study aimed to verify the effect of organic matter on salinity on the physiology and enzymatic profiles of two sorghum varieties, BRS Ponta Negra and BRS 373. The experiment was conducted in a completely randomized design (DIC) in a 4 x 4 x 2 arrangement, using different doses of organic matter as recommended (100%, 200%, 300%, and 400%) and the two sorghum varieties, with 4 replications. The variables analysed were: photosynthetic rate (A), transpiration (E), stomatal conductance (Gs), and enzymatic activity of ascorbate peroxidase (APX), polyphenoloxidase (POL), and catalase (CAT). The results showed that the A, E, and Gs responded differently to different doses of organic matter (OM); these responses were influenced by the isolated effects of the varieties or doses of organic matter, and their behaviour differed between the two analysed varieties. The A, E, and Gs showed contrasting response patterns between different doses of OM in variety 1 (BRS Ponta Negra) and variety 2 (BRS 373). These responses were influenced by the isolated effects of the varieties and/or doses of organic matter, showing different behaviours among the tested varieties.

Sea cucumbers and their symbiotic microbiome have evolved to feed on seabed sediments

Sea cucumbers are predominant deposit feeders in benthic ecosystems, providing protective benefits to coral reefs by reducing disease prevalence. However, how they receive sufficient nutrition from seabed sediments remains poorly understood. Here, we investigate Holothuria leucospilota, an ecologically significant tropical sea cucumber, to elucidate digestive mechanisms underlying marine deposit-feeding. Genomic analysis reveals intriguing evolutionary adaptation characterized by an expansion of digestive carbohydrase genes and a contraction of digestive protease genes, suggesting specialization in digesting microalgae. Developmentally, two pivotal dietary shifts, namely, from endogenous nutrition to planktonic feeding, and from planktonic feeding to deposit feeding, induce changes in digestive tract enzyme profiles, with adults mainly expressing carbohydrases and lipases. A nuanced symbiotic relationship exists between gut microbiota and the host, namely, specific resident bacteria supply crucial enzymes for food digestion, while other bacteria are digested and provide assimilable nutrients. Our study further identifies Holothuroidea lineage-specific lysozymes that are restrictedly expressed in the intestines to support bacterial digestion. Overall, this work advances our knowledge of the evolutionary innovations in the sea cucumber digestive system which enable them to efficiently utilize nutrients from seabed sediments and promote food recycling within marine ecosystems.

Gut Bacteria Metabolize Natural and Synthetic Steroid Hormones via the Reductive OsrABC Pathway.

Steroid hormone metabolism by the gut microbiome has multiple implications for mammalian physiology, but the underlying mechanisms and broader significance of this activity remains largely unknown. Here, we isolate a novel human gut bacterium, Clostridium steroidoreducens T strain HCS.1, that reduces cortisol, progesterone, testosterone, and related steroid hormones to 3β,5β-tetrahydrosteroid products. Through transcriptomics and heterologous enzyme profiling, we identify and biochemically characterize the C. steroidoreducens OsrABC reductive steroid hormone pathway. OsrA is a 3-oxo-Δ1-steroid hormone reductase that selectively targets the Δ1-bond present in synthetic steroid hormones, including the anti-inflammatory corticosteroids prednisolone and dexamethasone. OsrB is a promiscuous 3-oxo-Δ4-steroid hormone reductase that converts steroid hormones to 5β-dihydrosteroid intermediates. OsrC is a 3-oxo-5β-steroid hormone oxidoreductase that reduces 5β-intermediates to 3β,5β-tetrahydro products. We find that osrA and osrB homologs predict steroid hormone reductase activity in diverse gut bacteria and are enriched in Crohn's disease fecal metagenomes. These studies thus identify the basis of reductive steroid hormone metabolism in the gut and establish a link between inflammatory disease and microbial enzymes that deplete anti-inflammatory corticosteroids.