Blueberry fruit phenotypes are crucial agronomic trait indicators in blueberry breeding, and the number of fruits within the cluster, maturity, and compactness are important for evaluating blueberry harvesting methods and yield. However, the existing instance segmentation model cannot extract all these features. And due to the complex field environment and aggregated growth of blueberry fruits, the model is difficult to meet the demand for accurate segmentation and automatic phenotype extraction in the field environment. To solve the above problems, a high-precision phenotype extraction model based on hybrid task cascade (HTC) is proposed in this paper. ConvNeXt is used as the backbone network, and three Mask RCNN networks are cascaded to construct the model, rich feature learning through multi-scale training, and customized algorithms for phenotype extraction combined with contour detection techniques. Accurate segmentation of blueberry fruits and automatic extraction of fruit number, ripeness, and compactness under severe occlusion were successfully realized. Following experimental validation, the average precision for both bounding boxes (bbox) and masks stood at 0.974 and 0.975, respectively, with an intersection over union (IOU) threshold of 0.5. The linear regression of the extracted value of the fruit number against the true value showed that the coefficient of determination (R2) was 0.902, and the root mean squared error (RMSE) was 1.556. This confirms the effectiveness of the proposed model. It provides a new option for more efficient and accurate phenotypic extraction of blueberry clusters.