Stratal stacking patterns and factors influencing peat accumulation in coastal and continental settings represent a significant problem in studying coal-bearing sequences. To address this issue, this work focused on the Cretaceous-Paleogene Guaduas Formation on the Checua-Lenguazaque Syncline (CLS) coalfield in the Eastern Cordillera Basin (Colombian Andes). This study relies on geological survey, facies analysis, sequence stratigraphy, organic geochemistry, and coal petrography. Through these methods, depositional systems and sequences were characterized, and their relationship with coal composition was established. Sedimentary facies were categorized into four Facies Associations (FAs): lagoon, tidal flat, delta plain, and mixed fluvial system. Five T-R sequences (S1 to S5, in ascending order) were identified. S1 consists of lagoon and tidal sandstone, mudstone, and coal. S2-S4 comprise tidal, deltaic, and fluvial deposits. S5 is composed mainly of deltaic and fluvial facies. Thick coal seams (> 0.7 m) were concentrated in the regressive system tracts of S1 and S3, while the transgressive coals were deposited in S2-S3 and are associated with tidal environments. The organic petrography showed enrichment in vitrinite (30.00–85.20 %), while liptinite (0.00–16.60 %) and inertinite (4.60–34.40 %) varied according to depth and paleoenvironments. CLS coalfield displays an environmental evolution from shallow marine and lagoon deposits to deltaic and fluvial environments. Minor sea-level fluctuations, changes in accommodation, siliciclastic influx, and plant community distinguish this sedimentary succession. The deposition of the Guaduas Formation is characterized by a prograding pattern with dominant shallowing-upward cycles in a high accommodation setting. The organic matter accumulated under limno-telmatic to telmatic conditions in mesotrophic to ombrotrophic environments with nutrients derived mainly from rainfall. The paleoclimate for the Guaduas Formation indicates wet and hot conditions for flora expansion. This investigation determined paleoenvironments of the Maastrichtian-Paleocene coastal to fluvial successions within the tropical latitudes, indicating a strong relationship between depositional systems, sequence stratigraphy, paleoclimate, and coal composition.