The action of substituted 9, 10-anthraquinones on the room-temperature chlorophyll fluorescence emission from photosystem II in plant chloroplasts is consistent with the inhibition of electron transport. Previous fluorescence measurements suggest that anthraquinones competitively displace the electron acceptor Q B from its binding sites on the D1 protein. Competition studies and molecular orbital calculations led to a hypothesis whereby the substituents on the 9, 10-anthraquinone ring dictate whether an anthraquinone hydrogen bonds to one or both of the domains of the D1 polypeptide suggested as sites of Q B binding. This study seeks to confirm our binding site predictions for substituted anthraquinones using Stern-Volmer investigations of the chlorophyll fluorescence emission of spinach chloroplasts treated to alter the Q B function. Anthraquinone-induced fluorescence quenching is measured for chloroplasts depleted of Q B and the associated plastoquinone pool and for chloroplasts treated with additional inhibitors which are ascribed to different binding regions of the D1 protein. Comparisons of Stern-Volmer parameters, particularly ƒ a values, for anthraquinones in normal, Q B-depleted, and inhibitor-treated chloroplasts reveal variations in the accessibility of anthraquinones in normal, Q B site. The preferred anthraquinone binding sites supported by these findings are in excellent agreement with our previous predictions.