In this work, hydrogen diffusion behavior and mechanisms in the 4130X steel influenced by temperature, locally high concentration, and grain boundary were studied by leveraging both electrochemical hydrogen permeation experiments and molecular dynamics simulations. It was revealed that the hydrogen diffusion coefficient of the 4130X steel was increased with increasing temperature and decreasing locally high hydrogen concentration. The grain boundaries with misorientation below 15° characterized by an electron backscatter diffraction map were identified as hydrogen trapping sites, thus rendering a lower mean square displacement of hydrogen atoms and localized hydrogen diffusion trajectories. Furthermore, at a high hydrogen concentration of 4 at. %, these grain boundaries were saturated by hydrogen atoms, and platelet-like hydrogen clusters were formed within the lattice, which further inhibited the diffusive motion of hydrogen atoms. These findings would deepen our understanding of hydrogen embrittlement mechanisms by establishing the connections between macroscopic permeation behavior and atomic-scale hydrogen diffusion in structural materials.