Simultaneous detection of serotonin and dopamine is quite difficult due to their less oxidation potential difference which interferes redox reactions at the modified electrode. To overcome this issue, the temperature-dependent hydrothermal method has been adopted for the synthesis of Dy2MoO6 nanosheets with different morphology. Crystal structure, morphology, and surface properties of Dy2MoO6 nanosheets have been investigated using PXRD, FE-SEM, and XPS analysis. The electrochemical behavior of nanosheets has been examined using CV, LSV, and EIS spectroscopy. Electrochemical detection of serotonin and selectivity has been carried out using DPV and amperometric techniques. The limit of detection (LOD) for serotonin was found to be 4.1 nM with the linear range of 10–130 nM. From the simultaneous detection analysis, the LOD for dopamine was found to be 8.3 nM with the linear range of 20–340 nM. The selectivity of serotonin against ascorbic acid, glucose, acetylcholine, dopamine, and H2O2 confirmed the insubordinate behavior of the modified electrode for the interference except for serotonin. As prepared sensing system was also successfully applied for serotonin detection in human blood and urine samples as a practicality test. As a result, the present sensing system could be applicable for the biological and pharmaceutical samples analysis.