The deflection control of the main girder in suspension bridges, as flexible structures, is critically important during their operation. To predict the vertical deflection of existing suspension bridge girders under the combined effects of stochastic traffic loads and environmental temperature, this paper proposes an integrated deflection interval prediction method based on a Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), a probability density estimation layer, and bridge monitoring data. A time-series training dataset consisting of environmental temperature, vehicle load, and deflection monitoring data was built based on bridge health monitoring data. The CNN-LSTM combined layer is used to capture both local features and long-term dependencies in the time series. A Gaussian distribution (GD) is adopted as the probability density function, and its parameters are estimated using the maximum likelihood method, which outputs the optimal deflection prediction and probability intervals. Furthermore, this paper proposes a method for identifying abnormal deflections of the main girder in existing suspension bridges and establishes warning thresholds. This study indicates that, for short time scales, the CNN-LSTM-GD model achieves a 47.22% improvement in Root Mean Squared Error (RMSE) and a 12.37% increase in the coefficient of determination (R2) compared to the LSTM model. When compared to the CNN-LSTM model, it shows an improvement of 28.30% in RMSE and 6.55% in R2. For long time scales, the CNN-LSTM-GD model shows a 54.40% improvement in RMSE and a 10.22% increase in R2 compared to the LSTM model. Compared to the CNN-LSTM model, it improves RMSE by 38.43% and R2 by 5.31%. This model is instrumental in more accurately identifying abnormal deflections and determining deflection thresholds, making it applicable to bridge deflection early-warning systems.