The main aim of the present study was to determine the effects of ethephon (ET) and 1-methylcyclopropene (1-MCP) treatments on expression of aquaporin (AQP) genes during apple fruit ripening. The harvested apples were treated with 1-MCP (1 μL L−1) and ET (0.2 mmol L−1), respectively, and then ripened at room temperature (20 ± 1 °C). Our results suggested that 1-MCP application reduced weight loss, total soluble solids (TSS) content, respiration rate and ethylene production, maintained flesh firmness, and slowed down the increase in content of soluble sugar and the decrease in content of titratable acidity (TA) and dry matter concentration (DMC) in flesh and peel during ripening compared with the control, while ET treatment had the opposite effects. Quantitative real-time PCR (qPCR) analysis indicated that MdAQPs expression was differentially regulated by both treatments in flesh and peel during ripening. Expression of MdSIP1;2 and MdNIP5;3 in flesh and MdPIP1;3 and MdPIP2;7 in peel was generally up-regulated by both treatments, while MdTIP4;2 expression in peel was down-regulated by both treatments during ripening. Expression of MdNIP1;1, MdNIP2;1 and MdTIP1;1 in flesh and MdTIP2;2, MdTIP3;1 and MdNIP5;1 in peel was differentially down-regulated by ET treatment while differentially up-regulated by 1-MCP application during ripening. Transcript levels of MdTIP2;2, MdPIP1;2, MdPIP2;4, MdPIP2;3 and MdNIP5;2 in flesh and MdNIP2;1, MdSIP2;2, MdSIP1;2 and MdNIP1;1 in peel were differentially up-regulated by ET application while differentially reduced by 1-MCP application during ripening. After transient over-expression of MdERF2, MdAQPs exhibited varying expression profiles in both tissues during ripening. The results indicated that MdAQPs expression was modulated by ethylene signal in ripening apple fruit.